Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

2212766 .. 2212987

Gene Structure 222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36020

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGAAGGGGTTCAGCTCCATTATGGGTTTGGAGGAAGATGTGTTTATTGGGAATTCTTTGATTCATTTCTATGCAGAATGTGGGGACTTGGATTACGCCCGGAAGGTGTTTGATGAAATGCTTGAGAGAAACACTGTGTCGTGGTCTAGTTTGATTTGTGGTTATGGTATGAGGAACATGCGCAAAGGAGGCTGTTTCTGTTTAAGTACAACTATAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

73

Amino Acids

8.27

Weight (kDa)

5.68

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	13 - 45	9.9e-06	PPR repeat family
PPR	PF01535	18 - 44	8.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	52
AfaI	GTAC	1 cut(s)	208
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
ApoI	RAATTY	1 cut(s)	52
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	183
AsuC2I	CCSGG	1 cut(s)	100
BcnI	CCSGG	1 cut(s)	100
BfaI	CTAG	1 cut(s)	147
Bme1390I	CCNGG	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	98
BtsIMutI	CAGTG	1 cut(s)	132
CfoI	GCGC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	2 cut(s)	15, 192
CviKI_1	RGCY	2 cut(s)	15, 192
CviQI	GTAC	1 cut(s)	207
EcoRI	GAATTC	1 cut(s)	52
FaeI	CATG	1 cut(s)	181
FaiI	YATR	6 cut(s)	23, 72, 165, 170, 179, 215
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	1 cut(s)	177
FspBI	CTAG	1 cut(s)	147
FspI	TGCGCA	1 cut(s)	182
GlaI	GCGC	1 cut(s)	182
HapII	CCGG	1 cut(s)	100
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	181
HspAI	GCGC	1 cut(s)	181
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	1 cut(s)	113
MaeI	CTAG	1 cut(s)	147
MboII	GAAGA	1 cut(s)	47
MluCI	AATT	1 cut(s)	52
MnlI	CCTC	3 cut(s)	25, 165, 182
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	203
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	189
NciI	CCSGG	1 cut(s)	100
NlaIII	CATG	1 cut(s)	181
NsbI	TGCGCA	1 cut(s)	182
NspI	RCATGY	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	61
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	100
SetI	ASST	2 cut(s)	17, 108
SgeI	CNNG	7 cut(s)	100, 111, 112, 134, 153, 159, 190
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	52
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	98
TaaI	ACNGT	1 cut(s)	136
TasI	AATT	1 cut(s)	52
TatI	WGTACW	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	1 cut(s)	139
TspDTI	ATGAA	3 cut(s)	17, 53, 129
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.