Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006571.1

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

58897 .. 64629

Gene Structure 5733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006571.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

atgggtttggaggaacacgtgtctattgggaattggatcgtgcccggaaggtgtttgattaaatgcttgagagaaatactgtgtcgtggactagttcaatttgggcttatggtgactctgttgtgtgtcatttctgcttgtgcaaagttgagtgagagggtgtgtgcttacattggggagtctggactgaagagtaatgggcttatggtgaattcacttgttgatatgtttatgaaatttggggatactagtactgcaaagcgcctttttgatgaatgtatggataaaaactttggttctttacaatatgtgcgccatggactggctggtgaagcagtttcggtgatgggtgaaatactgcaacagggcctaagacccgacaagattcgggtacaagctgatcggattgaatttgagacgactgcaaataagctagaagtaaagattcgggtacaagctgatcggattgaatttgagacgactgcaaataagctagaagtaaaggactcccggtttgatcttgaattgccgggtagtgaggttccgaagtggttccattgtttgaaggaagttgttgctgatgaaaacaggccgtccagtacatctgcgttttcttttgaaatccctagcaaattgaaatgggagaatataggagtggctctttgttctgtttctggtttttcagttgaggaaactcttcgtgctgattttttcatcagtggggtacgtatgcattgtagcactgctattagaaagagttcaacatcagaccatatgtggctgacttatattccattatctggtgaaatgaagggaatggtggatcgagaggtggggactatagattttccactcggaaaggttacagactctggccaagttggctacatgctgaatgctgatctaactgaatttgggatgatcgcaaatgagctagaagcaaagtgggaaatatatactttcacttggaatggttgcagattcaagcaaaatcgggtacatgccgatctgtctgaagttgagacgactgcaaatgaactagaaggaaagtcatcaagtaggtgggttgatcaagtgtctgcagacattgtcatagagaagtggcgtgaggctggggcttccctgtttggaggctgctgcagaacaactccaaataccatcacggcaatatctaaggctcttcataacaagctagtcttttgcagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

402

Amino Acids

44.83

Weight (kDa)

5.67

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	322, 800
AclWI	GGATC	2 cut(s)	44, 831
AcoI	YGGCCR	1 cut(s)	874
AcsI	RAATTY	5 cut(s)	211, 236, 410, 470, 911
AcuI	CTGAAG	2 cut(s)	209, 1035
AcvI	CACGTG	1 cut(s)	19
AfaI	GTAC	6 cut(s)	253, 393, 453, 601, 726, 999
AfiI	CCNNNNNNNGG	2 cut(s)	322, 800
AflIII	ACRYGT	2 cut(s)	16, 18
AgsI	TTSAA	9 cut(s)	98, 410, 470, 524, 565, 620, 637, 762, 985
AhlI	ACTAGT	2 cut(s)	91, 248
AluBI	AGCT	6 cut(s)	398, 433, 458, 493, 934, 1192
AluI	AGCT	6 cut(s)	398, 433, 458, 493, 934, 1192
Alw26I	GTCTC	3 cut(s)	410, 470, 1016
AlwI	GGATC	2 cut(s)	44, 831
AlwNI	CAGNNNCTG	1 cut(s)	872
AoxI	GGCC	3 cut(s)	367, 590, 874
ApeKI	GCWGC	2 cut(s)	1134, 1137
ApoI	RAATTY	5 cut(s)	211, 236, 410, 470, 911
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
Asp700I	GAANNNNTTC	3 cut(s)	551, 696, 757
AspLEI	GCGC	2 cut(s)	264, 315
AspS9I	GGNCC	1 cut(s)	367
AsuC2I	CCSGG	3 cut(s)	45, 511, 531
AsuHPI	GGTGA	6 cut(s)	124, 220, 341, 355, 362, 815
BaeGI	GKGCMC	1 cut(s)	45
BalI	TGGCCA	1 cut(s)	876
BbrPI	CACGTG	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	1121, 1124
BccI	CCATC	2 cut(s)	340, 1166
BceAI	ACGGC	2 cut(s)	577, 1179
BciVI	GTATCC	1 cut(s)	238
BclI	TGATCA	1 cut(s)	1069
BcnI	CCSGG	3 cut(s)	45, 511, 531
BcoDI	GTCTC	3 cut(s)	410, 470, 1016
BcuI	ACTAGT	2 cut(s)	91, 248
BfaI	CTAG	8 cut(s)	92, 249, 434, 494, 627, 935, 1040, 1193
BfmI	CTRYAG	3 cut(s)	840, 1080, 1138
BfoI	RGCGCY	1 cut(s)	265
BfuI	GTATCC	1 cut(s)	238
BglI	GCCNNNNNGGC	1 cut(s)	882
BisI	GCNGC	2 cut(s)	1135, 1138
BlsI	GCNGC	2 cut(s)	1136, 1139
BmcAI	AGTACT	1 cut(s)	253
Bme1390I	CCNGG	3 cut(s)	45, 511, 531
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	2 cut(s)	543, 554
BmrFI	CCNGG	3 cut(s)	45, 511, 531
BpuEI	CTTGAG	1 cut(s)	88
BpuMI	CCSGG	3 cut(s)	45, 511, 531
BsaAI	YACGTR	2 cut(s)	19, 728
BsaJI	CCNNGG	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	2 cut(s)	322, 800
Bse1I	ACTGG	2 cut(s)	327, 597
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	1 cut(s)	924
BseLI	CCNNNNNNNGG	2 cut(s)	322, 800
BseNI	ACTGG	2 cut(s)	327, 597
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	2 cut(s)	1121, 1124
BseYI	CCCAGC	1 cut(s)	1112
BshFI	GGCC	3 cut(s)	369, 592, 876
BsiSI	CCGG	3 cut(s)	45, 511, 530
BslFI	GGGAC	1 cut(s)	850
BslI	CCNNNNNNNGG	2 cut(s)	322, 800
BsmAI	GTCTC	3 cut(s)	410, 470, 1016
BsmBI	CGTCTC	3 cut(s)	410, 470, 1016
BsmFI	GGGAC	1 cut(s)	850
BsmI	GAATGC	1 cut(s)	901
BsnI	GGCC	3 cut(s)	369, 592, 876
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	9 cut(s)	36, 400, 460, 517, 823, 901, 921, 1006, 1069
Bsp19I	CCATGG	1 cut(s)	316
BspANI	GGCC	3 cut(s)	369, 592, 876
BspLI	GGNNCC	2 cut(s)	543, 554
BspMAI	CTGCAG	2 cut(s)	1084, 1142
BspPI	GGATC	2 cut(s)	44, 831
BspQI	GCTCTTC	1 cut(s)	1185
BsrI	ACTGG	2 cut(s)	327, 597
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	9 cut(s)	36, 400, 460, 517, 823, 901, 921, 1006, 1069
BssT1I	CCWWGG	1 cut(s)	316
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	3 cut(s)	185, 702, 1185
BstBAI	YACGTR	2 cut(s)	19, 728
BstDEI	CTNAG	2 cut(s)	371, 1173
BstDSI	CCRYGG	1 cut(s)	316
BstF5I	GGATG	1 cut(s)	924
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	2 cut(s)	264, 315
BstKTI	GATC	9 cut(s)	39, 403, 463, 520, 826, 904, 924, 1009, 1072
BstMAI	GTCTC	3 cut(s)	410, 470, 1016
BstMBI	GATC	9 cut(s)	36, 400, 460, 517, 823, 901, 921, 1006, 1069
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 882
BstNSI	RCATGY	2 cut(s)	892, 1004
BstSCI	CCNGG	3 cut(s)	43, 509, 529
BstSFI	CTRYAG	3 cut(s)	840, 1080, 1138
BstSLI	GKGCMC	1 cut(s)	45
BstSNI	TACGTA	1 cut(s)	728
BstV1I	GCAGC	2 cut(s)	1121, 1124
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	369, 592, 876
BtgI	CCRYGG	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	924
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	2 cut(s)	724, 741
CaiI	CAGNNNCTG	1 cut(s)	872
CfoI	GCGC	2 cut(s)	264, 315
Cfr13I	GGNCC	1 cut(s)	367
Csp6I	GTAC	6 cut(s)	252, 392, 452, 600, 725, 998
CviAII	CATG	3 cut(s)	317, 889, 1001
CviQI	GTAC	6 cut(s)	252, 392, 452, 600, 725, 998
DdeI	CTNAG	2 cut(s)	371, 1173
DpnI	GATC	9 cut(s)	38, 402, 462, 519, 825, 903, 923, 1008, 1071
DpnII	GATC	9 cut(s)	36, 400, 460, 517, 823, 901, 921, 1006, 1069
EaeI	YGGCCR	1 cut(s)	874
Eam1104I	CTCTTC	3 cut(s)	185, 702, 1185
EarI	CTCTTC	3 cut(s)	185, 702, 1185
Eco105I	TACGTA	1 cut(s)	728
Eco130I	CCWWGG	1 cut(s)	316
Eco57I	CTGAAG	2 cut(s)	209, 1035
Eco72I	CACGTG	1 cut(s)	19
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRI	GAATTC	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	316
EcoT22I	ATGCAT	1 cut(s)	735
ErhI	CCWWGG	1 cut(s)	316
Esp3I	CGTCTC	3 cut(s)	410, 470, 1016
FaeI	CATG	3 cut(s)	320, 892, 1004
FalI	AAGNNNNNCTT	1 cut(s)	1181
FaqI	GGGAC	1 cut(s)	850
FatI	CATG	3 cut(s)	316, 888, 1000
FauNDI	CATATG	1 cut(s)	774
FbaI	TGATCA	1 cut(s)	1069
Fnu4HI	GCNGC	2 cut(s)	1135, 1138
FokI	GGATG	1 cut(s)	931
Fsp4HI	GCNGC	2 cut(s)	1135, 1138
FspBI	CTAG	8 cut(s)	92, 249, 434, 494, 627, 935, 1040, 1193
GlaI	GCGC	2 cut(s)	263, 314
GluI	GCNGC	2 cut(s)	1135, 1138
GsaI	CCCAGC	1 cut(s)	1116
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	3 cut(s)	369, 592, 876
HapII	CCGG	3 cut(s)	45, 511, 530
HhaI	GCGC	2 cut(s)	264, 315
Hin1II	CATG	3 cut(s)	320, 892, 1004
Hin6I	GCGC	2 cut(s)	262, 313
HinP1I	GCGC	2 cut(s)	262, 313
HinfI	GANTC	7 cut(s)	115, 179, 385, 445, 506, 869, 981
HpaII	CCGG	3 cut(s)	45, 511, 530
HphI	GGTGA	6 cut(s)	124, 220, 341, 355, 362, 815
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	6 cut(s)	405, 465, 546, 769, 857, 1015
Hpy188III	TCNNGA	3 cut(s)	183, 521, 827
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	4 cut(s)	42, 559, 805, 1037
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4IV	ACGT	2 cut(s)	18, 727
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 882
HpyF3I	CTNAG	2 cut(s)	371, 1173
HpySE526I	ACGT	2 cut(s)	18, 727
Hsp92II	CATG	3 cut(s)	320, 892, 1004
HspAI	GCGC	2 cut(s)	262, 313
Ksp22I	TGATCA	1 cut(s)	1069
Kzo9I	GATC	9 cut(s)	36, 400, 460, 517, 823, 901, 921, 1006, 1069
LguI	GCTCTTC	1 cut(s)	1185
Lsp1109I	GCAGC	2 cut(s)	1121, 1124
MaeI	CTAG	8 cut(s)	92, 249, 434, 494, 627, 935, 1040, 1193
MaeII	ACGT	2 cut(s)	18, 727
MaeIII	GTNAC	2 cut(s)	112, 862
MalI	GATC	9 cut(s)	38, 402, 462, 519, 825, 903, 923, 1008, 1071
MboI	GATC	9 cut(s)	36, 400, 460, 517, 823, 901, 921, 1006, 1069
MboII	GAAGA	3 cut(s)	202, 689, 1172
MhlI	GDGCHC	1 cut(s)	45
MlsI	TGGCCA	1 cut(s)	876
MluCI	AATT	9 cut(s)	31, 98, 211, 236, 410, 470, 524, 632, 911
MluNI	TGGCCA	1 cut(s)	876
MlyI	GAGTC	4 cut(s)	109, 188, 500, 863
MnlI	CCTC	7 cut(s)	4, 150, 532, 682, 823, 1102, 1124
Mox20I	TGGCCA	1 cut(s)	876
Mph1103I	ATGCAT	1 cut(s)	735
MroXI	GAANNNNTTC	3 cut(s)	551, 696, 757
MscI	TGGCCA	1 cut(s)	876
MseI	TTAA	2 cut(s)	60, 1207
Msp20I	TGGCCA	1 cut(s)	876
MspI	CCGG	3 cut(s)	45, 511, 530
MspR9I	CCNGG	3 cut(s)	45, 511, 531
Mva1269I	GAATGC	1 cut(s)	901
MwoI	GCNNNNNNNGC	2 cut(s)	332, 882
NciI	CCSGG	3 cut(s)	45, 511, 531
NcoI	CCATGG	1 cut(s)	316
NdeI	CATATG	1 cut(s)	774
NdeII	GATC	9 cut(s)	36, 400, 460, 517, 823, 901, 921, 1006, 1069
NlaIII	CATG	3 cut(s)	320, 892, 1004
NlaIV	GGNNCC	2 cut(s)	543, 554
NmuCI	GTSAC	1 cut(s)	112
NsiI	ATGCAT	1 cut(s)	735
NspI	RCATGY	2 cut(s)	892, 1004
PciSI	GCTCTTC	1 cut(s)	1185
PctI	GAATGC	1 cut(s)	901
PdmI	GAANNNNTTC	3 cut(s)	551, 696, 757
PfeI	GAWTC	3 cut(s)	385, 445, 981
PflFI	GACNNNGTC	1 cut(s)	1088
PflMI	CCANNNNNTGG	2 cut(s)	322, 800
PkrI	GCNGC	2 cut(s)	1136, 1139
PleI	GAGTC	4 cut(s)	109, 187, 500, 863
PmaCI	CACGTG	1 cut(s)	19
PmlI	CACGTG	1 cut(s)	19
PpsI	GAGTC	4 cut(s)	109, 187, 500, 863
Ppu21I	YACGTR	2 cut(s)	19, 728
PspCI	CACGTG	1 cut(s)	19
PspFI	CCCAGC	1 cut(s)	1112
PspN4I	GGNNCC	2 cut(s)	543, 554
PspPI	GGNCC	1 cut(s)	367
PstI	CTGCAG	2 cut(s)	1084, 1142
PstNI	CAGNNNCTG	1 cut(s)	872
PsyI	GACNNNGTC	1 cut(s)	1088
RsaI	GTAC	6 cut(s)	253, 393, 453, 601, 726, 999
RsaNI	GTAC	6 cut(s)	252, 392, 452, 600, 725, 998
SapI	GCTCTTC	1 cut(s)	1185
SaqAI	TTAA	2 cut(s)	60, 1207
SatI	GCNGC	2 cut(s)	1135, 1138
Sau3AI	GATC	9 cut(s)	36, 400, 460, 517, 823, 901, 921, 1006, 1069
Sau96I	GGNCC	1 cut(s)	367
ScaI	AGTACT	1 cut(s)	253
SchI	GAGTC	4 cut(s)	109, 188, 500, 863
ScrFI	CCNGG	3 cut(s)	45, 511, 531
SduI	GDGCHC	1 cut(s)	45
SfcI	CTRYAG	3 cut(s)	840, 1080, 1138
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
SnaBI	TACGTA	1 cut(s)	728
SpeI	ACTAGT	2 cut(s)	91, 248
Sse9I	AATT	9 cut(s)	31, 98, 211, 236, 410, 470, 524, 632, 911
SspMI	CTAG	8 cut(s)	92, 249, 434, 494, 627, 935, 1040, 1193
StyD4I	CCNGG	3 cut(s)	43, 509, 529
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	81
TaiI	ACGT	2 cut(s)	21, 730
TaqI	TCGA	1 cut(s)	826
TasI	AATT	9 cut(s)	31, 98, 211, 236, 410, 470, 524, 632, 911
TatI	WGTACW	2 cut(s)	251, 599
TfiI	GAWTC	3 cut(s)	385, 445, 981
Tru1I	TTAA	2 cut(s)	60, 1207
Tru9I	TTAA	2 cut(s)	60, 1207
TscAI	CASTG	2 cut(s)	724, 748
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	2 cut(s)	1134, 1137
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	7 cut(s)	248, 288, 597, 703, 824, 1050, 1172
TspRI	CASTG	2 cut(s)	724, 748
Tth111I	GACNNNGTC	1 cut(s)	1088
Van91I	CCANNNNNTGG	2 cut(s)	322, 800
XapI	RAATTY	5 cut(s)	211, 236, 410, 470, 911
XceI	RCATGY	2 cut(s)	892, 1004
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323
XmnI	GAANNNNTTC	3 cut(s)	551, 696, 757
XspI	CTAG	8 cut(s)	92, 249, 434, 494, 627, 935, 1040, 1193
ZrmI	AGTACT	1 cut(s)	253
Zsp2I	ATGCAT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.