MD07G1198500.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000589
Physical Location & Seq
Forward (+)
27678641 .. 27678901
261 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1198500.v1.1.491

Sequence Viewer

Length: 261 bp
ATGGGTATAGGGAAGAATGTGTTTGTTGCTACCTCTTTAGTTGATATGTATACCAAATGCGGAAATATGGAGAAAGCTCGTCGCATCTTTGATGTGATGCCCGAGAAGGATATAGTTTCTTGGAGCAGCATGATTAAGGGATATGCATCAAATGGGTTTCCTAAAGAAGCCATAGACCTCTTCTTTCAAATGCAGGAGGAGAATTTGAAACCCAATTGCTATGCCATGGTCAGCGTACTTTTTGCTTGTGCAAGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

87

Amino Acids

9.73

Weight (kDa)

7.67

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 36 - 85 2.7e-10 PPR repeat family
PPR PF01535 39 - 68 5.7e-10 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000589)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22690 AT3G22690 AT3G22690
fragaria_vesca FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica Prupe.1G018800_v2.0.a1
pyrus_communis pycom07g16490
rosa_chinensis RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 50
AciI CCGC 1 cut(s) 60
AcsI RAATTY 1 cut(s) 202
AfaI GTAC 1 cut(s) 237
AgsI TTSAA 2 cut(s) 188, 208
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 101
ApeKI GCWGC 1 cut(s) 126
ApoI RAATTY 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 101
BbvI GCAGC 1 cut(s) 138
BisI GCNGC 1 cut(s) 127
BlsI GCNGC 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 101
BmsI GCATC 3 cut(s) 87, 93, 155
BsaBI GATNNNNATC 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 225
BseJI GATNNNNATC 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 101
BsoBI CYCGRG 1 cut(s) 101
Bsp19I CCATGG 1 cut(s) 225
BspACI CCGC 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 225
BssNAI GTATAC 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 225
Bst1107I GTATAC 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 185
BstDSI CCRYGG 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 138
BstZ17I GTATAC 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 225
Csp6I GTAC 1 cut(s) 236
CviAII CATG 2 cut(s) 130, 226
CviJI RGCY 2 cut(s) 77, 170
CviKI_1 RGCY 2 cut(s) 77, 170
CviQI GTAC 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 225
EcoT22I ATGCAT 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 2 cut(s) 133, 229
FatI CATG 2 cut(s) 129, 225
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 1 cut(s) 127
Fsp4HI GCNGC 1 cut(s) 127
GluI GCNGC 1 cut(s) 127
Hin1II CATG 2 cut(s) 133, 229
Hpy166II GTNNAC 1 cut(s) 51
Hpy8I GTNNAC 1 cut(s) 51
Hpy99I CGWCG 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 100
HpyCH4V TGCA 3 cut(s) 146, 193, 251
Hsp92II CATG 2 cut(s) 133, 229
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 1 cut(s) 179
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 3 cut(s) 87, 93, 155
MboII GAAGA 2 cut(s) 25, 172
MfeI CAATTG 1 cut(s) 214
MluCI AATT 2 cut(s) 202, 214
MnlI CCTC 3 cut(s) 43, 188, 190
Mph1103I ATGCAT 1 cut(s) 148
MseI TTAA 1 cut(s) 135
MunI CAATTG 1 cut(s) 214
NcoI CCATGG 1 cut(s) 225
NlaIII CATG 2 cut(s) 133, 229
NsiI ATGCAT 1 cut(s) 148
PkrI GCNGC 1 cut(s) 128
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 127
SetI ASST 3 cut(s) 35, 79, 180
SfaNI GCATC 3 cut(s) 87, 93, 155
SgeI CNNG 7 cut(s) 90, 113, 115, 132, 142, 206, 238
Sse9I AATT 2 cut(s) 202, 214
SsiI CCGC 1 cut(s) 60
StyI CCWWGG 1 cut(s) 225
TasI AATT 2 cut(s) 202, 214
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TseI GCWGC 1 cut(s) 126
XapI RAATTY 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 50
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.