Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

2462809 .. 2469188

Gene Structure 6380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36062

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTTCAAATGTTGCATTGAGTGCGTGCTCGAAGATTGTGGCTTTCTGTGGAGGGGTTCAGTTCAACCGGTTGTGAAGATGGGTTTGGAGGAAGAAATGTTTATTGGGAATTCTTTGATTCGTTTCTGTGCGGACTGTGGGGACTTGGATTATGACCGGAAGGTGTTTGATGAAATGCTTGGGAGAAATAACGTGTCGCGGACTAGTTTGAGTTGTGGTTATGGTAGGATGAATATGTCAGTGGAGGCTGTTTCTTTGTTTTCTGAGGTGGTGATTGCCAGTTTAGGGTTTAGGGGTGAAATGCTACAACAGGGCCTCAGACCCGACAAGATTACCATGCTATCTGCAATTTCAGCTTGTGCACAAATAAGTGATTCTCTCTCTGGAACGTGTTGCCATGGTTATTTTCTAGGGAATGGACTAGAAGGTTGGGATACCCTCGAAGTGCAATTAAGGTGTTCAATAAATGGCAAGAAGATATGTTTCTGCTTGGACTGCAGCCATTGGACTGCGTTGATGTTGCAAGAAATAAACAGCAGACTCAGAGATGCTGGCCACGTTCCTGATTTGGACAATGTCCTGCTTGATGTTGATGAGAAGGAGAAAGAGTACTTGCTCAGTCGACATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

210

Amino Acids

23.48

Weight (kDa)

4.86

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	622
AccII	CGCG	1 cut(s)	199
AciI	CCGC	2 cut(s)	131, 199
AcoI	YGGCCR	1 cut(s)	553
AcsI	RAATTY	1 cut(s)	109
AfaI	GTAC	1 cut(s)	611
AfiI	CCNNNNNNNGG	1 cut(s)	285
AflIII	ACRYGT	2 cut(s)	192, 389
AgeI	ACCGGT	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	7, 65, 462
AhlI	ACTAGT	1 cut(s)	203
AjuI	GAANNNNNNNTTGG	4 cut(s)	68, 87, 100, 119
AluBI	AGCT	2 cut(s)	356, 630
AluI	AGCT	2 cut(s)	356, 630
Alw21I	GWGCWC	2 cut(s)	30, 364
Alw44I	GTGCAC	1 cut(s)	360
AoxI	GGCC	2 cut(s)	313, 553
ApaLI	GTGCAC	1 cut(s)	360
ApeKI	GCWGC	1 cut(s)	498
ApoI	RAATTY	1 cut(s)	109
AsiGI	ACCGGT	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	2 cut(s)	283, 308
BaeGI	GKGCMC	1 cut(s)	364
BalI	TGGCCA	1 cut(s)	555
Bbv12I	GWGCWC	2 cut(s)	30, 364
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	1 cut(s)	73
BciVI	GTATCC	1 cut(s)	427
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	4 cut(s)	204, 410, 422, 631
BfmI	CTRYAG	1 cut(s)	496
BfuI	GTATCC	1 cut(s)	427
BisI	GCNGC	1 cut(s)	499
BlsI	GCNGC	1 cut(s)	500
BmcAI	AGTACT	1 cut(s)	611
BmgT120I	GGNCC	1 cut(s)	313
BmsI	GCATC	1 cut(s)	538
BsaJI	CCNNGG	1 cut(s)	397
BsaWI	WCCGGW	2 cut(s)	67, 156
BsaXI	ACNNNNNCTCC	2 cut(s)	593, 623
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMII	CTCAG	4 cut(s)	255, 331, 556, 631
BseNI	ACTGG	1 cut(s)	279
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	510
Bsh1236I	CGCG	1 cut(s)	199
BshFI	GGCC	2 cut(s)	315, 555
BshTI	ACCGGT	1 cut(s)	67
BsiHKAI	GWGCWC	2 cut(s)	30, 364
BsiSI	CCGG	2 cut(s)	68, 157
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	2 cut(s)	315, 555
Bsp1286I	GDGCHC	2 cut(s)	30, 364
Bsp19I	CCATGG	1 cut(s)	397
BspACI	CCGC	2 cut(s)	131, 199
BspANI	GGCC	2 cut(s)	315, 555
BspCNI	CTCAG	4 cut(s)	256, 330, 555, 630
BspFNI	CGCG	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	500
BsrFI	RCCGGY	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	397
BssT1I	CCWWGG	1 cut(s)	397
Bst4CI	ACNGT	1 cut(s)	137
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	26, 553
BstDEI	CTNAG	4 cut(s)	264, 317, 542, 617
BstDSI	CCRYGG	1 cut(s)	397
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 353, 495
BstSFI	CTRYAG	1 cut(s)	496
BstSLI	GKGCMC	1 cut(s)	364
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	510
BsuI	GTATCC	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	315, 555
BtgI	CCRYGG	1 cut(s)	397
BtsCI	GGATG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	2 cut(s)	26, 553
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	610
CspAI	ACCGGT	1 cut(s)	67
CviAII	CATG	2 cut(s)	337, 398
CviJI	RGCY	7 cut(s)	42, 248, 315, 356, 501, 555, 630
CviKI_1	RGCY	7 cut(s)	42, 248, 315, 356, 501, 555, 630
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	4 cut(s)	264, 317, 542, 617
EaeI	YGGCCR	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	397
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRI	GAATTC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	2 cut(s)	340, 401
FaiI	YATR	7 cut(s)	153, 222, 236, 338, 399, 481, 627
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	2 cut(s)	336, 397
FblI	GTMKAC	1 cut(s)	622
Fnu4HI	GCNGC	1 cut(s)	499
FokI	GGATG	1 cut(s)	241
Fsp4HI	GCNGC	1 cut(s)	499
FspBI	CTAG	4 cut(s)	204, 410, 422, 631
GluI	GCNGC	1 cut(s)	499
HaeIII	GGCC	2 cut(s)	315, 555
HapII	CCGG	2 cut(s)	68, 157
Hin1II	CATG	2 cut(s)	340, 401
HincII	GTYRAC	1 cut(s)	623
HindII	GTYRAC	1 cut(s)	623
HinfI	GANTC	3 cut(s)	118, 374, 540
HpaII	CCGG	2 cut(s)	68, 157
HphI	GGTGA	2 cut(s)	283, 308
Hpy166II	GTNNAC	2 cut(s)	362, 623
Hpy188I	TCNGA	3 cut(s)	265, 320, 545
Hpy188III	TCNNGA	2 cut(s)	384, 563
Hpy8I	GTNNAC	2 cut(s)	362, 623
HpyAV	CCTTC	3 cut(s)	154, 419, 592
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	3 cut(s)	192, 389, 558
HpyCH4V	TGCA	6 cut(s)	15, 347, 362, 448, 498, 523
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 353, 495
HpyF3I	CTNAG	4 cut(s)	264, 317, 542, 617
HpySE526I	ACGT	3 cut(s)	192, 389, 558
Hsp92II	CATG	2 cut(s)	340, 401
LpnPI	CCDG	8 cut(s)	81, 170, 292, 296, 369, 537, 576, 593
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	4 cut(s)	204, 410, 422, 631
MaeII	ACGT	3 cut(s)	192, 389, 558
MboII	GAAGA	4 cut(s)	44, 88, 104, 487
MhlI	GDGCHC	2 cut(s)	30, 364
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	3 cut(s)	109, 348, 449
MluNI	TGGCCA	1 cut(s)	555
MlyI	GAGTC	1 cut(s)	534
MnlI	CCTC	6 cut(s)	45, 82, 238, 259, 326, 449
Mox20I	TGGCCA	1 cut(s)	555
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	1 cut(s)	452
Msp20I	TGGCCA	1 cut(s)	555
MspI	CCGG	2 cut(s)	68, 157
MvnI	CGCG	1 cut(s)	199
MwoI	GCNNNNNNNGC	3 cut(s)	21, 353, 495
NcoI	CCATGG	1 cut(s)	397
NlaIII	CATG	2 cut(s)	340, 401
PfeI	GAWTC	2 cut(s)	118, 374
PflFI	GACNNNGTC	1 cut(s)	575
PinAI	ACCGGT	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	500
PleI	GAGTC	1 cut(s)	534
PpsI	GAGTC	1 cut(s)	534
PspPI	GGNCC	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	500
PsyI	GACNNNGTC	1 cut(s)	575
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
SalI	GTCGAC	1 cut(s)	621
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	1 cut(s)	499
Sau96I	GGNCC	1 cut(s)	313
ScaI	AGTACT	1 cut(s)	611
SchI	GAGTC	1 cut(s)	534
SduI	GDGCHC	2 cut(s)	30, 364
SetI	ASST	9 cut(s)	165, 195, 270, 358, 392, 430, 458, 561, 632
SfaNI	GCATC	1 cut(s)	538
SfcI	CTRYAG	1 cut(s)	496
SpeI	ACTAGT	1 cut(s)	203
Sse9I	AATT	3 cut(s)	109, 348, 449
SsiI	CCGC	2 cut(s)	131, 199
SspMI	CTAG	4 cut(s)	204, 410, 422, 631
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	3 cut(s)	195, 392, 561
TaqI	TCGA	3 cut(s)	30, 441, 622
TasI	AATT	3 cut(s)	109, 348, 449
TatI	WGTACW	1 cut(s)	609
TfiI	GAWTC	2 cut(s)	118, 374
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	1 cut(s)	246
TseI	GCWGC	1 cut(s)	498
TspDTI	ATGAA	2 cut(s)	186, 245
TspRI	CASTG	1 cut(s)	246
Tth111I	GACNNNGTC	1 cut(s)	575
VneI	GTGCAC	1 cut(s)	360
XapI	RAATTY	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	622
XspI	CTAG	4 cut(s)	204, 410, 422, 631
ZrmI	AGTACT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.