Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Forward (+)

4374665 .. 4375062

Gene Structure 398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36249

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGTGAATTCACTTGTTGTTATGTTTATGAAATTTGGGGATACTAGTGCTGCAAAGTGTCTTTTTGATGAATGTGTGGATAAAAACTTTGTTCTTTACAGTAGGGATTTGTCAAATTATGTGCACCAGGGACTGGCTGGTGAAGCAGTTTCGGTGATGGGTGAAATGCTACAACAGGGCCTAAGACCCGACAAGGCATTTTGTCTGCAATCTCAGCTTTCGCACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

76

Amino Acids

8.46

Weight (kDa)

5.45

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	133
AcsI	RAATTY	2 cut(s)	7, 32
AfiI	CCNNNNNNNGG	1 cut(s)	133
AhlI	ACTAGT	1 cut(s)	44
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw21I	GWGCWC	1 cut(s)	126
Alw44I	GTGCAC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	133
AoxI	GGCC	1 cut(s)	178
ApaLI	GTGCAC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	7, 32
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	4 cut(s)	16, 152, 166, 173
BaeGI	GKGCMC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	128
BciVI	GTATCC	1 cut(s)	34
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	1 cut(s)	45
BfuI	GTATCC	1 cut(s)	34
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	138
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	37
BshFI	GGCC	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	101
BstDEI	CTNAG	2 cut(s)	182, 213
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 214
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	180
CaiI	CAGNNNCTG	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	178
CviJI	RGCY	3 cut(s)	137, 180, 217
CviKI_1	RGCY	3 cut(s)	137, 180, 217
DdeI	CTNAG	2 cut(s)	182, 213
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	126
FaiI	YATR	3 cut(s)	23, 29, 120
FaqI	GGGAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	180
HphI	GGTGA	4 cut(s)	16, 152, 166, 173
Hpy166II	GTNNAC	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4V	TGCA	3 cut(s)	53, 124, 208
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 214
HpyF3I	CTNAG	2 cut(s)	182, 213
LpnPI	CCDG	5 cut(s)	113, 119, 123, 140, 161
Lsp1109I	GCAGC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	3 cut(s)	7, 32, 115
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	143, 214
PflMI	CCANNNNNTGG	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	178
PstNI	CAGNNNCTG	1 cut(s)	133
SatI	GCNGC	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	178
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	1 cut(s)	219
SgeI	CNNG	9 cut(s)	26, 57, 139, 140, 146, 150, 188, 200, 205
SpeI	ACTAGT	1 cut(s)	44
Sse9I	AATT	3 cut(s)	7, 32, 115
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	101
TasI	AATT	3 cut(s)	7, 32, 115
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	44, 84
Van91I	CCANNNNNTGG	1 cut(s)	133
VneI	GTGCAC	1 cut(s)	122
XapI	RAATTY	2 cut(s)	7, 32
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.