Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8455349.1

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

65 .. 1753

Gene Structure 1689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8455349.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1689 bp

atgaaatgtggagctactgatgctgcaaagcggctttttgatgaatgtgtggataaaaacttggttctttacaacacgattttgtcaaattatgtgcgccagggactggctagtgaagcagtttctgtcgtgggtgaaatgctacaacagggcctaagacccgacaaggttaccatgttagctgcaatttcagcttgcgcacagctaagtgattctctctcaggtaagtgttgccatggttatgttctaaggaatggactagaaggttgggataccatttgtaatgccatgattgacatgtacatgaagtgcggcgaacaagagatggcctgcataatttttgacaatatgtcaaataagactgtagtatcatggaactctttgatttctggtttcataagaagtggcgatgtgaagtcagcttgggaaattttcaatgagatgcctaagagtgatctcgtctcttggaacactatgattggtgctctggtccaagagagcaagtttgaggaagcaattgaacttttccgggagatgcagaccgagggaataaaaggagatagggtgaccatggtggaggttgcatctgcctgcggatatttaggagctcttgatcttgcaaagtggactcatgcttatattgaaaaaagcgaaatcaaatgtgatacgcggcttgggacagccttagttgacatgtttgctaaatgtggtgatcctcaaagtgcaatgaaagtgttcaatacaatggcagggagagatgtttctgcttggactgcagccatcagagcaatggccatggaggggaatgggaaacgagctctagaactttttgatgacatgcttaagcaaggggtgaaaccagatgaagtagtctttgtggcggtactaacagcgtgcagccatgttggtcttttggaacaagggcggaacatttttatgtcaatgcagttggtccatggcatttcccctcatatcgttcattacggttgcatggtcgatctactaggccgagccgggctcttggaagaagctgttgatctgataaagtgcatgccaatggaacccaatgatgtcatttggggcactctcttggctgcttgtcgaacccacaaaaacgtcgaaatggcaacatatgcagctgaacagatatcaaagttgaccactcagaggacaggtattcatgtgcttctctcaaacatatatgcatcggctgggaaatgggcagacgttgcaaaagtgaggctacaattgaaagagagagggattcagaaggtacccggatccagttccattgaagttaatggagtgattcatgagtttacctccggtggtgatactgatacacacacagagaggagccatattgcgttgatgttgcaagaaataaacagcagactcagagatgctggttacgttcctgatctcgacaatgtcctggttgatgttgatgagaaggagaaagagtacttgctcagtcgacatagtgagaaagtggccatagcttttgggcttataggtacggggcaaggagtgccaattcgcgtggtgaagaatctgagaatgtgttctgattgtcactcttttgccaaattagtatcaagaatatatgacagggaaattattgttcgagataacaacaggttccatttctttagtcagggcctgtgctcttgcagtgattactggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

562

Amino Acids

62.17

Weight (kDa)

5.68

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	199
Acc65I	GGTACC	1 cut(s)	1273
AccB1I	GGYRCC	1 cut(s)	1273
AccB7I	CCANNNNNTGG	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	1477
AccII	CGCG	2 cut(s)	670, 1542
AciI	CCGC	6 cut(s)	31, 312, 594, 670, 881, 925
AclWI	GGATC	3 cut(s)	707, 1275, 1288
AcoI	YGGCCR	2 cut(s)	792, 1494
AcsI	RAATTY	1 cut(s)	429
AfaI	GTAC	5 cut(s)	302, 885, 1275, 1466, 1519
AfiI	CCNNNNNNNGG	3 cut(s)	106, 801, 1167
AflII	CTTAAG	1 cut(s)	842
AflIII	ACRYGT	2 cut(s)	297, 693
AgsI	TTSAA	6 cut(s)	436, 521, 644, 739, 1252, 1295
AhdI	GACNNNNNGTC	1 cut(s)	349
AjnI	CCWGG	2 cut(s)	99, 1434
Alw21I	GWGCWC	4 cut(s)	487, 610, 820, 1670
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	3 cut(s)	707, 1275, 1288
AlwNI	CAGNNNCTG	3 cut(s)	106, 125, 1663
AoxI	GGCC	6 cut(s)	151, 327, 792, 1006, 1494, 1660
ApeKI	GCWGC	6 cut(s)	23, 182, 776, 897, 1094, 1136
ApoI	RAATTY	1 cut(s)	429
Asp700I	GAANNNNTTC	2 cut(s)	734, 1564
Asp718I	GGTACC	1 cut(s)	1273
AspLEI	GCGC	2 cut(s)	99, 200
AspS9I	GGNCC	4 cut(s)	151, 490, 952, 1660
AsuC2I	CCSGG	3 cut(s)	530, 1015, 1278
AsuHPI	GGTGA	6 cut(s)	146, 577, 722, 865, 1343, 1558
AvaII	GGWCC	2 cut(s)	490, 952
BaeGI	GKGCMC	1 cut(s)	1085
BaeI	ACNNNNGTAYC	2 cut(s)	351, 384
BalI	TGGCCA	2 cut(s)	794, 1496
BamHI	GGATCC	1 cut(s)	1280
BanI	GGYRCC	1 cut(s)	1273
BanII	GRGCYC	3 cut(s)	610, 820, 1020
Bbv12I	GWGCWC	4 cut(s)	487, 610, 820, 1670
BbvI	GCAGC	6 cut(s)	10, 169, 788, 909, 1081, 1148
BccI	CCATC	2 cut(s)	319, 788
BciT130I	CCWGG	2 cut(s)	101, 1436
BciVI	GTATCC	1 cut(s)	265
BcnI	CCSGG	3 cut(s)	530, 1015, 1278
BcoDI	GTCTC	1 cut(s)	466
BfaI	CTAG	4 cut(s)	111, 260, 821, 1004
BfmI	CTRYAG	2 cut(s)	363, 774
BfrI	CTTAAG	1 cut(s)	842
BfuI	GTATCC	1 cut(s)	265
BisI	GCNGC	9 cut(s)	24, 32, 183, 313, 671, 777, 898, 1095, 1137
BlsI	GCNGC	9 cut(s)	25, 33, 184, 314, 672, 778, 899, 1096, 1138
BmcAI	AGTACT	1 cut(s)	1466
Bme1390I	CCNGG	5 cut(s)	101, 530, 1015, 1278, 1436
Bme18I	GGWCC	2 cut(s)	490, 952
BmeRI	GACNNNNNGTC	1 cut(s)	349
BmgT120I	GGNCC	4 cut(s)	151, 490, 952, 1660
BmiI	GGNNCC	5 cut(s)	1062, 1275, 1282, 1358, 1643
BmrFI	CCNGG	5 cut(s)	101, 530, 1015, 1278, 1436
BmsI	GCATC	6 cut(s)	10, 432, 525, 593, 1214, 1393
BplI	GAGNNNNNCTC	4 cut(s)	1002, 1034, 1307, 1339
BpuMI	CCSGG	3 cut(s)	530, 1015, 1278
BsaJI	CCNNGG	6 cut(s)	100, 235, 543, 570, 795, 955
BsaWI	WCCGGW	1 cut(s)	1325
BsaXI	ACNNNNNCTCC	4 cut(s)	549, 579, 1448, 1478
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 801, 1167
Bse1I	ACTGG	3 cut(s)	111, 1284, 1688
Bse3DI	GCAATG	2 cut(s)	732, 795
BseBI	CCWGG	2 cut(s)	101, 1436
BseDI	CCNNGG	6 cut(s)	100, 235, 543, 570, 795, 955
BseLI	CCNNNNNNNGG	3 cut(s)	106, 801, 1167
BseMI	GCAATG	2 cut(s)	732, 795
BseMII	CTCAG	5 cut(s)	234, 1178, 1411, 1486, 1547
BseNI	ACTGG	3 cut(s)	111, 1284, 1688
BseRI	GAGGAG	1 cut(s)	1369
BseSI	GKGCMC	1 cut(s)	1085
BseXI	GCAGC	6 cut(s)	10, 169, 788, 909, 1081, 1148
BseYI	CCCAGC	1 cut(s)	1211
BsgI	GTGCAG	1 cut(s)	916
Bsh1236I	CGCG	2 cut(s)	670, 1542
BshFI	GGCC	6 cut(s)	153, 329, 794, 1008, 1496, 1662
BshNI	GGYRCC	1 cut(s)	1273
BsiHKAI	GWGCWC	4 cut(s)	487, 610, 820, 1670
BsiSI	CCGG	4 cut(s)	529, 1014, 1278, 1326
BslFI	GGGAC	2 cut(s)	117, 691
BslI	CCNNNNNNNGG	3 cut(s)	106, 801, 1167
BsmAI	GTCTC	1 cut(s)	466
BsmBI	CGTCTC	1 cut(s)	466
BsmFI	GGGAC	2 cut(s)	117, 691
BsnI	GGCC	6 cut(s)	153, 329, 794, 1008, 1496, 1662
Bsp1286I	GDGCHC	6 cut(s)	487, 610, 820, 1020, 1085, 1670
Bsp1407I	TGTACA	1 cut(s)	300
Bsp143I	GATC	7 cut(s)	454, 613, 712, 997, 1036, 1280, 1420
Bsp19I	CCATGG	4 cut(s)	235, 570, 795, 955
BspACI	CCGC	6 cut(s)	31, 312, 594, 670, 881, 925
BspANI	GGCC	6 cut(s)	153, 329, 794, 1008, 1496, 1662
BspCNI	CTCAG	5 cut(s)	233, 1177, 1410, 1485, 1548
BspFNI	CGCG	2 cut(s)	670, 1542
BspHI	TCATGA	1 cut(s)	1312
BspLI	GGNNCC	5 cut(s)	1062, 1275, 1282, 1358, 1643
BspMAI	CTGCAG	1 cut(s)	778
BspPI	GGATC	3 cut(s)	707, 1275, 1288
BspT107I	GGYRCC	1 cut(s)	1273
BspTI	CTTAAG	1 cut(s)	842
BsrDI	GCAATG	2 cut(s)	732, 795
BsrGI	TGTACA	1 cut(s)	300
BsrI	ACTGG	3 cut(s)	111, 1284, 1688
BssECI	CCNNGG	6 cut(s)	100, 235, 543, 570, 795, 955
BssMI	GATC	7 cut(s)	454, 613, 712, 997, 1036, 1280, 1420
BssT1I	CCWWGG	4 cut(s)	235, 570, 795, 955
Bst2UI	CCWGG	2 cut(s)	101, 1436
Bst4CI	ACNGT	2 cut(s)	364, 986
BstAFI	CTTAAG	1 cut(s)	842
BstAPI	GCANNNNNTGC	3 cut(s)	1133, 1229, 1531
BstAUI	TGTACA	1 cut(s)	300
BstC8I	GCNNGC	5 cut(s)	196, 331, 592, 895, 1052
BstDSI	CCRYGG	4 cut(s)	235, 570, 795, 955
BstEII	GGTNACC	2 cut(s)	169, 565
BstFNI	CGCG	2 cut(s)	670, 1542
BstHHI	GCGC	2 cut(s)	99, 200
BstKTI	GATC	7 cut(s)	457, 616, 715, 1000, 1039, 1283, 1423
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	7 cut(s)	454, 613, 712, 997, 1036, 1280, 1420
BstMWI	GCNNNNNNNGC	8 cut(s)	20, 116, 191, 773, 785, 1133, 1229, 1531
BstNI	CCWGG	2 cut(s)	101, 1436
BstNSI	RCATGY	4 cut(s)	301, 697, 841, 1054
BstPI	GGTNACC	2 cut(s)	169, 565
BstSCI	CCNGG	5 cut(s)	99, 528, 1013, 1276, 1434
BstSFI	CTRYAG	2 cut(s)	363, 774
BstSLI	GKGCMC	1 cut(s)	1085
BstUI	CGCG	2 cut(s)	670, 1542
BstV1I	GCAGC	6 cut(s)	10, 169, 788, 909, 1081, 1148
BstX2I	RGATCY	1 cut(s)	1280
BstYI	RGATCY	1 cut(s)	1280
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	6 cut(s)	153, 329, 794, 1008, 1496, 1662
BtgI	CCRYGG	4 cut(s)	235, 570, 795, 955
BtgZI	GCGATG	1 cut(s)	423
BtsI	GCAGTG	1 cut(s)	1681
BtsIMutI	CAGTG	1 cut(s)	1681
Cac8I	GCNNGC	5 cut(s)	196, 331, 592, 895, 1052
CaiI	CAGNNNCTG	3 cut(s)	106, 125, 1663
CciI	TCATGA	1 cut(s)	1312
CfoI	GCGC	2 cut(s)	99, 200
Cfr13I	GGNCC	4 cut(s)	151, 490, 952, 1660
Csp6I	GTAC	5 cut(s)	301, 884, 1274, 1465, 1518
CspCI	CAANNNNNGTGG	2 cut(s)	1524, 1559
CviQI	GTAC	5 cut(s)	301, 884, 1274, 1465, 1518
DpnI	GATC	7 cut(s)	456, 615, 714, 999, 1038, 1282, 1422
DpnII	GATC	7 cut(s)	454, 613, 712, 997, 1036, 1280, 1420
DriI	GACNNNNNGTC	1 cut(s)	349
EaeI	YGGCCR	2 cut(s)	792, 1494
Eam1105I	GACNNNNNGTC	1 cut(s)	349
EciI	GGCGGA	1 cut(s)	940
Ecl136II	GAGCTC	2 cut(s)	608, 818
Eco130I	CCWWGG	4 cut(s)	235, 570, 795, 955
Eco24I	GRGCYC	3 cut(s)	610, 820, 1020
Eco32I	GATATC	1 cut(s)	1149
Eco47I	GGWCC	2 cut(s)	490, 952
Eco53kI	GAGCTC	2 cut(s)	608, 818
Eco91I	GGTNACC	2 cut(s)	169, 565
EcoICRI	GAGCTC	2 cut(s)	608, 818
EcoO109I	RGGNCCY	2 cut(s)	151, 1660
EcoO65I	GGTNACC	2 cut(s)	169, 565
EcoRII	CCWGG	2 cut(s)	99, 1434
EcoRV	GATATC	1 cut(s)	1149
EcoT14I	CCWWGG	4 cut(s)	235, 570, 795, 955
EcoT22I	ATGCAT	1 cut(s)	1207
EcoT38I	GRGCYC	3 cut(s)	610, 820, 1020
ErhI	CCWWGG	4 cut(s)	235, 570, 795, 955
Esp3I	CGTCTC	1 cut(s)	466
FaqI	GGGAC	2 cut(s)	117, 691
FauNDI	CATATG	1 cut(s)	1132
FblI	GTMKAC	1 cut(s)	1477
Fnu4HI	GCNGC	9 cut(s)	24, 32, 183, 313, 671, 777, 898, 1095, 1137
FriOI	GRGCYC	3 cut(s)	610, 820, 1020
Fsp4HI	GCNGC	9 cut(s)	24, 32, 183, 313, 671, 777, 898, 1095, 1137
FspBI	CTAG	4 cut(s)	111, 260, 821, 1004
FspI	TGCGCA	1 cut(s)	199
GlaI	GCGC	2 cut(s)	98, 199
GluI	GCNGC	9 cut(s)	24, 32, 183, 313, 671, 777, 898, 1095, 1137
GsaI	CCCAGC	1 cut(s)	1215
HaeIII	GGCC	6 cut(s)	153, 329, 794, 1008, 1496, 1662
HapII	CCGG	4 cut(s)	529, 1014, 1278, 1326
HhaI	GCGC	2 cut(s)	99, 200
Hin6I	GCGC	2 cut(s)	97, 198
HinP1I	GCGC	2 cut(s)	97, 198
HincII	GTYRAC	3 cut(s)	691, 1158, 1478
HindII	GTYRAC	3 cut(s)	691, 1158, 1478
HinfI	GANTC	6 cut(s)	212, 628, 1264, 1309, 1395, 1552
HpaII	CCGG	4 cut(s)	529, 1014, 1278, 1326
HphI	GGTGA	6 cut(s)	146, 577, 722, 865, 1343, 1558
Hpy166II	GTNNAC	5 cut(s)	627, 691, 1158, 1320, 1478
Hpy188I	TCNGA	7 cut(s)	785, 1041, 1167, 1269, 1400, 1557, 1570
Hpy188III	TCNNGA	7 cut(s)	611, 821, 1313, 1418, 1424, 1599, 1628
Hpy8I	GTNNAC	5 cut(s)	627, 691, 1158, 1320, 1478
Hpy99I	CGWCG	1 cut(s)	1121
HpyAV	CCTTC	3 cut(s)	257, 1264, 1447
HpyCH4III	ACNGT	2 cut(s)	364, 986
HpyCH4IV	ACGT	3 cut(s)	1116, 1227, 1413
HpyF10VI	GCNNNNNNNGC	8 cut(s)	20, 116, 191, 773, 785, 1133, 1229, 1531
HpySE526I	ACGT	3 cut(s)	1116, 1227, 1413
HspAI	GCGC	2 cut(s)	97, 198
KpnI	GGTACC	1 cut(s)	1277
Kzo9I	GATC	7 cut(s)	454, 613, 712, 997, 1036, 1280, 1420
LmnI	GCTCC	3 cut(s)	11, 605, 1356
Lsp1109I	GCAGC	6 cut(s)	10, 169, 788, 909, 1081, 1148
LweI	GCATC	6 cut(s)	10, 432, 525, 593, 1214, 1393
MaeI	CTAG	4 cut(s)	111, 260, 821, 1004
MaeII	ACGT	3 cut(s)	1116, 1227, 1413
MaeIII	GTNAC	4 cut(s)	169, 565, 1409, 1574
MalI	GATC	7 cut(s)	456, 615, 714, 999, 1038, 1282, 1422
MboI	GATC	7 cut(s)	454, 613, 712, 997, 1036, 1280, 1420
MboII	GAAGA	2 cut(s)	1037, 1561
MfeI	CAATTG	2 cut(s)	516, 1247
MflI	RGATCY	1 cut(s)	1280
MhlI	GDGCHC	6 cut(s)	487, 610, 820, 1020, 1085, 1670
MlsI	TGGCCA	2 cut(s)	794, 1496
MluCI	AATT	9 cut(s)	88, 186, 336, 429, 516, 1247, 1536, 1589, 1617
MluNI	TGGCCA	2 cut(s)	794, 1496
MlyI	GAGTC	2 cut(s)	622, 1389
Mox20I	TGGCCA	2 cut(s)	794, 1496
Mph1103I	ATGCAT	1 cut(s)	1207
MroXI	GAANNNNTTC	2 cut(s)	734, 1564
MscI	TGGCCA	2 cut(s)	794, 1496
MseI	TTAA	2 cut(s)	843, 1299
MslI	CAYNNNNRTG	4 cut(s)	240, 302, 935, 1055
Msp20I	TGGCCA	2 cut(s)	794, 1496
MspA1I	CMGCKG	1 cut(s)	1139
MspCI	CTTAAG	1 cut(s)	842
MspI	CCGG	4 cut(s)	529, 1014, 1278, 1326
MspR9I	CCNGG	5 cut(s)	101, 530, 1015, 1278, 1436
MunI	CAATTG	2 cut(s)	516, 1247
MvaI	CCWGG	2 cut(s)	101, 1436
MvnI	CGCG	2 cut(s)	670, 1542
MwoI	GCNNNNNNNGC	8 cut(s)	20, 116, 191, 773, 785, 1133, 1229, 1531
NciI	CCSGG	3 cut(s)	530, 1015, 1278
NcoI	CCATGG	4 cut(s)	235, 570, 795, 955
NdeI	CATATG	1 cut(s)	1132
NdeII	GATC	7 cut(s)	454, 613, 712, 997, 1036, 1280, 1420
NlaIV	GGNNCC	5 cut(s)	1062, 1275, 1282, 1358, 1643
NmeAIII	GCCGAG	1 cut(s)	1034
NmuCI	GTSAC	2 cut(s)	565, 1574
NsbI	TGCGCA	1 cut(s)	199
NsiI	ATGCAT	1 cut(s)	1207
NspI	RCATGY	4 cut(s)	301, 697, 841, 1054
PaeI	GCATGC	1 cut(s)	1054
PagI	TCATGA	1 cut(s)	1312
PciI	ACATGT	2 cut(s)	297, 693
PdmI	GAANNNNTTC	2 cut(s)	734, 1564
PfeI	GAWTC	4 cut(s)	212, 1264, 1309, 1552
PflFI	GACNNNGTC	1 cut(s)	1430
PflMI	CCANNNNNTGG	1 cut(s)	106
PfoI	TCCNGGA	1 cut(s)	528
PkrI	GCNGC	9 cut(s)	25, 33, 184, 314, 672, 778, 899, 1096, 1138
PleI	GAGTC	2 cut(s)	622, 1389
PpsI	GAGTC	2 cut(s)	622, 1389
PscI	ACATGT	2 cut(s)	297, 693
Psp124BI	GAGCTC	2 cut(s)	610, 820
Psp6I	CCWGG	2 cut(s)	99, 1434
PspEI	GGTNACC	2 cut(s)	169, 565
PspFI	CCCAGC	1 cut(s)	1211
PspGI	CCWGG	2 cut(s)	99, 1434
PspN4I	GGNNCC	5 cut(s)	1062, 1275, 1282, 1358, 1643
PspPI	GGNCC	4 cut(s)	151, 490, 952, 1660
PstI	CTGCAG	1 cut(s)	778
PstNI	CAGNNNCTG	3 cut(s)	106, 125, 1663
PsuI	RGATCY	1 cut(s)	1280
PsyI	GACNNNGTC	1 cut(s)	1430
PvuII	CAGCTG	1 cut(s)	1139
RsaI	GTAC	5 cut(s)	302, 885, 1275, 1466, 1519
RsaNI	GTAC	5 cut(s)	301, 884, 1274, 1465, 1518
RseI	CAYNNNNRTG	4 cut(s)	240, 302, 935, 1055
SacI	GAGCTC	2 cut(s)	610, 820
SalI	GTCGAC	1 cut(s)	1476
SaqAI	TTAA	2 cut(s)	843, 1299
SatI	GCNGC	9 cut(s)	24, 32, 183, 313, 671, 777, 898, 1095, 1137
Sau3AI	GATC	7 cut(s)	454, 613, 712, 997, 1036, 1280, 1420
Sau96I	GGNCC	4 cut(s)	151, 490, 952, 1660
ScaI	AGTACT	1 cut(s)	1466
SchI	GAGTC	2 cut(s)	622, 1389
ScrFI	CCNGG	5 cut(s)	101, 530, 1015, 1278, 1436
SduI	GDGCHC	6 cut(s)	487, 610, 820, 1020, 1085, 1670
SfaNI	GCATC	6 cut(s)	10, 432, 525, 593, 1214, 1393
SfcI	CTRYAG	2 cut(s)	363, 774
SinI	GGWCC	2 cut(s)	490, 952
SmiMI	CAYNNNNRTG	4 cut(s)	240, 302, 935, 1055
SmlI	CTYRAG	1 cut(s)	842
SmoI	CTYRAG	1 cut(s)	842
SphI	GCATGC	1 cut(s)	1054
Sse9I	AATT	9 cut(s)	88, 186, 336, 429, 516, 1247, 1536, 1589, 1617
SsiI	CCGC	6 cut(s)	31, 312, 594, 670, 881, 925
SspMI	CTAG	4 cut(s)	111, 260, 821, 1004
SstI	GAGCTC	2 cut(s)	610, 820
StyD4I	CCNGG	5 cut(s)	99, 528, 1013, 1276, 1434
StyI	CCWWGG	4 cut(s)	235, 570, 795, 955
TaaI	ACNGT	2 cut(s)	364, 986
TaiI	ACGT	3 cut(s)	1119, 1230, 1416
TaqI	TCGA	6 cut(s)	996, 1102, 1119, 1425, 1477, 1627
TaqII	GACCGA	1 cut(s)	557
TasI	AATT	9 cut(s)	88, 186, 336, 429, 516, 1247, 1536, 1589, 1617
TatI	WGTACW	2 cut(s)	300, 1464
TauI	GCSGC	3 cut(s)	34, 315, 673
TfiI	GAWTC	4 cut(s)	212, 1264, 1309, 1552
Tru1I	TTAA	2 cut(s)	843, 1299
Tru9I	TTAA	2 cut(s)	843, 1299
TscAI	CASTG	1 cut(s)	1681
TseFI	GTSAC	2 cut(s)	565, 1574
TseI	GCWGC	6 cut(s)	23, 182, 776, 897, 1094, 1136
Tsp45I	GTSAC	2 cut(s)	565, 1574
TspDTI	ATGAA	9 cut(s)	17, 57, 320, 385, 743, 879, 968, 1169, 1301
TspRI	CASTG	1 cut(s)	1681
Tth111I	GACNNNGTC	1 cut(s)	1430
Van91I	CCANNNNNTGG	1 cut(s)	106
Vha464I	CTTAAG	1 cut(s)	842
VpaK11BI	GGWCC	2 cut(s)	490, 952
XapI	RAATTY	1 cut(s)	429
XbaI	TCTAGA	1 cut(s)	820
XceI	RCATGY	4 cut(s)	301, 697, 841, 1054
XcmI	CCANNNNNNNNNTGG	1 cut(s)	787
XmiI	GTMKAC	1 cut(s)	1477
XmnI	GAANNNNTTC	2 cut(s)	734, 1564
XspI	CTAG	4 cut(s)	111, 260, 821, 1004
ZrmI	AGTACT	1 cut(s)	1466
Zsp2I	ATGCAT	1 cut(s)	1207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.