Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Forward (+)

18941551 .. 18941757

Gene Structure 207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g16490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGAATAATTCAGTTTCGGATCGGAGTTTTTACATTGAGAGTGAGGAAGAAGATGATGAGGAAAAGGAATTCAATAAGAGCATTGAAGACGGAGGCGAATCGGATTCTTCTGCCGAATCTTTTACTGAGAATCGGCAGCCGAATAATCCCAGTTCTCACAACAATCAATGGCCTCAAAGTTACAGGTTCTCTCTCTCCCCCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

69

Amino Acids

7.85

Weight (kDa)

4.12

Isoelectric Point (pI)

103.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	73, 86
AlwI	GGATC	1 cut(s)	27
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	148
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
BmrI	ACTGGG	1 cut(s)	144
BmuI	ACTGGG	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	19
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	118
BspPI	GGATC	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	126
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	172
CviJI	RGCY	2 cut(s)	139, 172
CviKI_1	RGCY	2 cut(s)	139, 172
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	68
FaiI	YATR	2 cut(s)	203, 205
Fnu4HI	GCNGC	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	137
GluI	GCNGC	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	172
HinfI	GANTC	4 cut(s)	98, 104, 116, 130
Hpy188I	TCNGA	3 cut(s)	19, 24, 103
HpyF3I	CTNAG	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	19
LpnPI	CCDG	2 cut(s)	163, 169
Lsp1109I	GCAGC	1 cut(s)	148
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	4 cut(s)	59, 62, 98, 99
MluCI	AATT	2 cut(s)	7, 68
MnlI	CCTC	4 cut(s)	37, 52, 86, 183
NdeII	GATC	1 cut(s)	19
PfeI	GAWTC	4 cut(s)	98, 104, 116, 130
PkrI	GCNGC	1 cut(s)	138
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	1 cut(s)	19
SetI	ASST	1 cut(s)	188
SgeI	CNNG	2 cut(s)	162, 196
Sse9I	AATT	2 cut(s)	7, 68
TasI	AATT	2 cut(s)	7, 68
TfiI	GAWTC	4 cut(s)	98, 104, 116, 130
TseI	GCWGC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	105
XapI	RAATTY	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.