Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

32667905 .. 32671440

Gene Structure 3536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0307500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGAGGGTCAATTGCAGGTCGTCTTGGCCCCAAGCTCCCCTAGGCCAACTGGGAATTTTGTGGGAGAGAAAGGCAGTAAAAATGATAGTGGCAGTATTGGGGTAGTTGCTAGAAATGATGAAGGTGTGGGAGTCGCAGCTTTAGCTAGACCGCTCGTGCATGCTTACTCATCTTTAAATTTGAAAGTTGAAGCGTGTAGATCGGGTCTTTTGCTTGGTATTCACCGGTTGGATGTGGACATTGAGAGTGACTCTATCCTGTTAATTACCGCCATTAATAGAGGAGATGATGATTTGTTTGAGGTGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

103

Amino Acids

10.78

Weight (kDa)

4.8

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	7
AccBSI	CCGCTC	1 cut(s)	154
AciI	CCGC	2 cut(s)	152, 270
AcsI	RAATTY	2 cut(s)	55, 178
AgeI	ACCGGT	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	184, 191
AluBI	AGCT	3 cut(s)	36, 140, 146
AluI	AGCT	3 cut(s)	36, 140, 146
AoxI	GGCC	2 cut(s)	27, 44
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	2 cut(s)	55, 178
AseI	ATTAAT	1 cut(s)	276
AsiGI	ACCGGT	1 cut(s)	225
AspA2I	CCTAGG	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	215
AvrII	CCTAGG	1 cut(s)	41
BauI	CACGAG	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	149
BfaI	CTAG	3 cut(s)	42, 111, 147
BfuAI	ACCTGC	1 cut(s)	7
BisI	GCNGC	1 cut(s)	138
BlnI	CCTAGG	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	30
BmrI	ACTGGG	1 cut(s)	60
BmuI	ACTGGG	1 cut(s)	60
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
BsaJI	CCNNGG	1 cut(s)	41
BsaWI	WCCGGW	1 cut(s)	225
Bse118I	RCCGGY	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	41
BseGI	GGATG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	55
BseRI	GAGGAG	1 cut(s)	297
BseXI	GCAGC	1 cut(s)	149
BshFI	GGCC	2 cut(s)	29, 46
BshTI	ACCGGT	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	226
BsnI	GGCC	2 cut(s)	29, 46
Bsp143I	GATC	1 cut(s)	200
BspACI	CCGC	2 cut(s)	152, 270
BspANI	GGCC	2 cut(s)	29, 46
BspLI	GGNNCC	1 cut(s)	30
BspMI	ACCTGC	1 cut(s)	7
BsrBI	CCGCTC	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	1 cut(s)	200
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	41
Bst2BI	CACGAG	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	1 cut(s)	203
BstMBI	GATC	1 cut(s)	200
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	29, 46
BtsCI	GGATG	1 cut(s)	238
BveI	ACCTGC	1 cut(s)	7
Cac8I	GCNNGC	1 cut(s)	162
Cfr10I	RCCGGY	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	28
CspAI	ACCGGT	1 cut(s)	225
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	5 cut(s)	29, 36, 46, 140, 146
CviKI_1	RGCY	5 cut(s)	29, 36, 46, 140, 146
DpnI	GATC	1 cut(s)	202
DpnII	GATC	1 cut(s)	200
DraI	TTTAAA	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	1 cut(s)	164
FaiI	YATR	1 cut(s)	162
FatI	CATG	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	3 cut(s)	42, 111, 147
GluI	GCNGC	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	29, 46
HapII	CCGG	1 cut(s)	226
Hin1II	CATG	1 cut(s)	164
HinfI	GANTC	2 cut(s)	132, 251
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	238
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	1 cut(s)	116
HpyCH4V	TGCA	2 cut(s)	16, 160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
Hsp92II	CATG	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	200
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	4 cut(s)	2, 36, 239, 272
Lsp1109I	GCAGC	1 cut(s)	149
MaeI	CTAG	3 cut(s)	42, 111, 147
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	1 cut(s)	202
MbiI	CCGCTC	1 cut(s)	154
MboI	GATC	1 cut(s)	200
MfeI	CAATTG	1 cut(s)	11
MluCI	AATT	4 cut(s)	11, 55, 178, 264
MlyI	GAGTC	2 cut(s)	141, 245
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	2 cut(s)	275, 295
MseI	TTAA	3 cut(s)	176, 263, 276
MspI	CCGG	1 cut(s)	226
MunI	CAATTG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	1 cut(s)	200
NlaIII	CATG	1 cut(s)	164
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	248
NspI	RCATGY	1 cut(s)	164
PaeI	GCATGC	1 cut(s)	164
PinAI	ACCGGT	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	2 cut(s)	140, 245
PpsI	GAGTC	2 cut(s)	140, 245
PshBI	ATTAAT	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	28
SaqAI	TTAA	3 cut(s)	176, 263, 276
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	1 cut(s)	200
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	2 cut(s)	141, 245
SetI	ASST	6 cut(s)	21, 38, 127, 142, 148, 306
SphI	GCATGC	1 cut(s)	164
Sse9I	AATT	4 cut(s)	11, 55, 178, 264
SsiI	CCGC	2 cut(s)	152, 270
SspMI	CTAG	3 cut(s)	42, 111, 147
StyI	CCWWGG	1 cut(s)	41
TasI	AATT	4 cut(s)	11, 55, 178, 264
Tru1I	TTAA	3 cut(s)	176, 263, 276
Tru9I	TTAA	3 cut(s)	176, 263, 276
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	135
VspI	ATTAAT	1 cut(s)	276
XapI	RAATTY	2 cut(s)	55, 178
XceI	RCATGY	1 cut(s)	164
XmaJI	CCTAGG	1 cut(s)	41
XspI	CTAG	3 cut(s)	42, 111, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.