Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

17263155 .. 17265005

Gene Structure 1851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0196200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGTGGAAATTAATCTTGTACACTTTGAATTCATTGATGACATTGACCATCAAAAACCCAAATCTGGGAGAACGATCGACGGAGGTGGAAGGGCGACGATCTCAGGACTCATAAACAGATTTGGAGGATTCTCCATATCCGATGTGGGCTCGAATTACTTGCCGATCTTGATTACTGCATCGTGCTCGCTGGCAAAAATGAGTTGCTGCATTTACACAGTTTTTGGTCTTCGTTCAAAGACTAACAGCGCGTCCAGGAGGGCGCACAAGGTCTTTGAACTCAATCAATGGCGTCCATGGCTACCTGCTTCACTCTTCCACCAAACCCTTGTCGATCATCATCTCCTTTTCAAAGCTTCAATCTTACCTAATCGTTCCCAAACCCTCCCTATTATCCAAACCCCCCTCTTCCCGTCCCTTGCCTCCAAGTTTCGACAATCTAGGGCTTCAGCGCCGGTCGTCAAAGCCAGCATTGCCGCCGCCGTCAGGCCCGGCGGCGCCGTCGAGAGTGATAAGTTACCTTCCGATGTGAGAAAGCGAGCAATGGAAGCTGTGGACGCTTGTGGAAGAAGAGTGACTGTTGGTGACGTAGCCGGCAGAGCGGGGATTAAGCTCCATGAGGCTCAGAACGCTTTGCAAGCTCTCGCTTCTGACACTCAGGGCTTCTTGGAGGCTGGTGTCCCCTCACGTGGACTTGCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

234

Amino Acids

25.23

Weight (kDa)

9.85

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	313
AccB1I	GGYRCC	1 cut(s)	497
AccBSI	CCGCTC	1 cut(s)	602
AccII	CGCG	1 cut(s)	251
AciI	CCGC	4 cut(s)	477, 480, 495, 602
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	432
AcvI	CACGTG	1 cut(s)	689
AcyI	GRCGYC	2 cut(s)	292, 498
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	4 cut(s)	65, 66, 486, 689
AgsI	TTSAA	5 cut(s)	29, 237, 278, 352, 360
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	4 cut(s)	356, 551, 613, 641
AluI	AGCT	4 cut(s)	356, 551, 613, 641
Alw21I	GWGCWC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	488
ApeKI	GCWGC	1 cut(s)	207
ApoI	RAATTY	1 cut(s)	29
ArsI	GACNNNNNNTTYG	1 cut(s)	684
AseI	ATTAAT	1 cut(s)	12
AspLEI	GCGC	4 cut(s)	251, 265, 454, 500
AspS9I	GGNCC	1 cut(s)	489
AsuC2I	CCSGG	1 cut(s)	492
AsuHPI	GGTGA	1 cut(s)	596
BanI	GGYRCC	1 cut(s)	497
BanII	GRGCYC	1 cut(s)	152
BbrPI	CACGTG	1 cut(s)	689
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	1 cut(s)	57
BceAI	ACGGC	2 cut(s)	467, 485
BcgI	CGANNNNNNTGC	4 cut(s)	142, 168, 176, 202
BciT130I	CCWGG	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	492
BfaI	CTAG	1 cut(s)	441
BfoI	RGCGCY	2 cut(s)	455, 501
BfuAI	ACCTGC	1 cut(s)	313
BisI	GCNGC	4 cut(s)	208, 477, 480, 496
BlsI	GCNGC	4 cut(s)	209, 478, 481, 497
Bme1390I	CCNGG	2 cut(s)	256, 492
BmgT120I	GGNCC	1 cut(s)	489
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	2 cut(s)	256, 492
BmsI	GCATC	1 cut(s)	188
BpiI	GAAGAC	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	492
BsaAI	YACGTR	1 cut(s)	689
BsaBI	GATNNNNATC	1 cut(s)	339
BsaHI	GRCGYC	2 cut(s)	292, 498
BsaJI	CCNNGG	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 66, 486, 689
Bse118I	RCCGGY	2 cut(s)	454, 593
Bse3DI	GCAATG	2 cut(s)	471, 549
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	296
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	4 cut(s)	65, 66, 486, 689
BseMI	GCAATG	2 cut(s)	471, 549
BseMII	CTCAG	3 cut(s)	117, 638, 671
BseXI	GCAGC	1 cut(s)	194
Bsh1236I	CGCG	1 cut(s)	251
Bsh1285I	CGRYCG	2 cut(s)	78, 459
BshFI	GGCC	1 cut(s)	490
BshNI	GGYRCC	1 cut(s)	497
BsiEI	CGRYCG	2 cut(s)	78, 459
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	3 cut(s)	455, 492, 594
BslFI	GGGAC	2 cut(s)	400, 665
BslI	CCNNNNNNNGG	4 cut(s)	65, 66, 486, 689
BsmFI	GGGAC	2 cut(s)	400, 665
BsnI	GGCC	1 cut(s)	490
Bsp1286I	GDGCHC	2 cut(s)	152, 188
Bsp1407I	TGTACA	1 cut(s)	19
Bsp143I	GATC	4 cut(s)	75, 99, 165, 334
Bsp19I	CCATGG	1 cut(s)	296
BspACI	CCGC	4 cut(s)	477, 480, 495, 602
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	3 cut(s)	116, 637, 670
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	313
BspT107I	GGYRCC	1 cut(s)	497
BsrBI	CCGCTC	1 cut(s)	602
BsrDI	GCAATG	2 cut(s)	471, 549
BsrFI	RCCGGY	2 cut(s)	454, 593
BsrGI	TGTACA	1 cut(s)	19
BssAI	RCCGGY	2 cut(s)	454, 593
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	4 cut(s)	75, 99, 165, 334
BssNI	GRCGYC	2 cut(s)	292, 498
BssT1I	CCWWGG	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	220, 580
Bst6I	CTCTTC	3 cut(s)	320, 413, 565
BstACI	GRCGYC	2 cut(s)	292, 498
BstAUI	TGTACA	1 cut(s)	19
BstBAI	YACGTR	1 cut(s)	689
BstC8I	GCNNGC	6 cut(s)	188, 192, 469, 540, 595, 639
BstDEI	CTNAG	3 cut(s)	103, 624, 657
BstDSI	CCRYGG	1 cut(s)	296
BstFNI	CGCG	1 cut(s)	251
BstH2I	RGCGCY	2 cut(s)	455, 501
BstHHI	GCGC	4 cut(s)	251, 265, 454, 500
BstKTI	GATC	4 cut(s)	78, 102, 168, 337
BstMBI	GATC	4 cut(s)	75, 99, 165, 334
BstMCI	CGRYCG	2 cut(s)	78, 459
BstMWI	GCNNNNNNNGC	7 cut(s)	298, 473, 548, 557, 599, 629, 638
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	2 cut(s)	254, 490
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	1 cut(s)	194
BstV2I	GAAGAC	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	490
BtgI	CCRYGG	1 cut(s)	296
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	6 cut(s)	188, 192, 469, 540, 595, 639
CfoI	GCGC	4 cut(s)	251, 265, 454, 500
Cfr10I	RCCGGY	2 cut(s)	454, 593
Cfr13I	GGNCC	1 cut(s)	489
CseI	GACGC	3 cut(s)	240, 281, 566
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	2 cut(s)	297, 617
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	3 cut(s)	103, 624, 657
DinI	GGCGCC	1 cut(s)	499
DpnI	GATC	4 cut(s)	77, 101, 167, 336
DpnII	GATC	4 cut(s)	75, 99, 165, 334
Eam1104I	CTCTTC	3 cut(s)	320, 413, 565
EarI	CTCTTC	3 cut(s)	320, 413, 565
Eco130I	CCWWGG	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	432
Eco72I	CACGTG	1 cut(s)	689
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	152
EgeI	GGCGCC	1 cut(s)	499
EheI	GGCGCC	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	2 cut(s)	300, 620
FaiI	YATR	4 cut(s)	113, 137, 298, 618
FaqI	GGGAC	2 cut(s)	400, 665
FatI	CATG	2 cut(s)	296, 616
FauI	CCCGC	1 cut(s)	595
Fnu4HI	GCNGC	4 cut(s)	208, 477, 480, 496
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	4 cut(s)	208, 477, 480, 496
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	4 cut(s)	250, 264, 453, 499
GluI	GCNGC	4 cut(s)	208, 477, 480, 496
HaeII	RGCGCY	2 cut(s)	455, 501
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	3 cut(s)	455, 492, 594
HgaI	GACGC	3 cut(s)	240, 281, 566
HhaI	GCGC	4 cut(s)	251, 265, 454, 500
Hin1I	GRCGYC	2 cut(s)	292, 498
Hin1II	CATG	2 cut(s)	300, 620
Hin6I	GCGC	4 cut(s)	249, 263, 452, 498
HinP1I	GCGC	4 cut(s)	249, 263, 452, 498
HindIII	AAGCTT	1 cut(s)	354
HinfI	GANTC	2 cut(s)	108, 129
HpaII	CCGG	3 cut(s)	455, 492, 594
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	3 cut(s)	22, 556, 692
Hpy188I	TCNGA	4 cut(s)	142, 526, 627, 652
Hpy188III	TCNNGA	3 cut(s)	105, 169, 505
Hpy8I	GTNNAC	3 cut(s)	22, 556, 692
Hpy99I	CGWCG	3 cut(s)	83, 100, 506
HpyAV	CCTTC	2 cut(s)	84, 531
HpyCH4III	ACNGT	2 cut(s)	220, 580
HpyCH4IV	ACGT	2 cut(s)	588, 688
HpyCH4V	TGCA	4 cut(s)	179, 210, 637, 698
HpyF10VI	GCNNNNNNNGC	7 cut(s)	298, 473, 548, 557, 599, 629, 638
HpyF3I	CTNAG	3 cut(s)	103, 624, 657
HpySE526I	ACGT	2 cut(s)	588, 688
Hsp92I	GRCGYC	2 cut(s)	292, 498
Hsp92II	CATG	2 cut(s)	300, 620
HspAI	GCGC	4 cut(s)	249, 263, 452, 498
KasI	GGCGCC	1 cut(s)	497
KroI	GCCGGC	1 cut(s)	593
KroNI	GCCGGC	1 cut(s)	595
Kzo9I	GATC	4 cut(s)	75, 99, 165, 334
LmnI	GCTCC	1 cut(s)	618
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	2 cut(s)	588, 688
MaeIII	GTNAC	3 cut(s)	516, 574, 584
MalI	GATC	4 cut(s)	77, 101, 167, 336
MbiI	CCGCTC	1 cut(s)	602
MboI	GATC	4 cut(s)	75, 99, 165, 334
MboII	GAAGA	5 cut(s)	221, 307, 400, 579, 582
MhlI	GDGCHC	2 cut(s)	152, 188
MluCI	AATT	3 cut(s)	9, 29, 154
Mly113I	GGCGCC	1 cut(s)	498
MlyI	GAGTC	1 cut(s)	102
MnlI	CCTC	9 cut(s)	77, 119, 252, 395, 416, 433, 613, 664, 694
MroNI	GCCGGC	1 cut(s)	593
MseI	TTAA	2 cut(s)	12, 609
MspI	CCGG	3 cut(s)	455, 492, 594
MspR9I	CCNGG	2 cut(s)	256, 492
MvaI	CCWGG	1 cut(s)	256
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	7 cut(s)	298, 473, 548, 557, 599, 629, 638
NaeI	GCCGGC	1 cut(s)	595
NarI	GGCGCC	1 cut(s)	498
NciI	CCSGG	1 cut(s)	492
NcoI	CCATGG	1 cut(s)	296
NdeII	GATC	4 cut(s)	75, 99, 165, 334
NgoMIV	GCCGGC	1 cut(s)	593
NlaIII	CATG	2 cut(s)	300, 620
NlaIV	GGNNCC	1 cut(s)	499
NmuCI	GTSAC	2 cut(s)	574, 584
PdiI	GCCGGC	1 cut(s)	595
PfeI	GAWTC	1 cut(s)	129
PfoI	TCCNGGA	1 cut(s)	254
PkrI	GCNGC	4 cut(s)	209, 478, 481, 497
Ple19I	CGATCG	1 cut(s)	78
PleI	GAGTC	1 cut(s)	102
PluTI	GGCGCC	1 cut(s)	501
PmaCI	CACGTG	1 cut(s)	689
PmlI	CACGTG	1 cut(s)	689
PpsI	GAGTC	1 cut(s)	102
Ppu21I	YACGTR	1 cut(s)	689
PshBI	ATTAAT	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	254
PspCI	CACGTG	1 cut(s)	689
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	499
PspPI	GGNCC	1 cut(s)	489
PvuI	CGATCG	1 cut(s)	78
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	12, 609
SatI	GCNGC	4 cut(s)	208, 477, 480, 496
Sau3AI	GATC	4 cut(s)	75, 99, 165, 334
Sau96I	GGNCC	1 cut(s)	489
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	2 cut(s)	256, 492
SduI	GDGCHC	2 cut(s)	152, 188
SfaNI	GCATC	1 cut(s)	188
SfoI	GGCGCC	1 cut(s)	499
Sse9I	AATT	3 cut(s)	9, 29, 154
SsiI	CCGC	4 cut(s)	477, 480, 495, 602
SspDI	GGCGCC	1 cut(s)	497
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	2 cut(s)	254, 490
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	2 cut(s)	220, 580
TaiI	ACGT	2 cut(s)	591, 691
TaqI	TCGA	5 cut(s)	78, 152, 333, 433, 504
TasI	AATT	3 cut(s)	9, 29, 154
TatI	WGTACW	1 cut(s)	19
TauI	GCSGC	3 cut(s)	479, 482, 498
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	2 cut(s)	12, 609
Tru9I	TTAA	2 cut(s)	12, 609
TseFI	GTSAC	2 cut(s)	574, 584
TseI	GCWGC	1 cut(s)	207
Tsp45I	GTSAC	2 cut(s)	574, 584
TspDTI	ATGAA	1 cut(s)	22
TspGWI	ACGGA	1 cut(s)	96
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	1 cut(s)	29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.