Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

38319413 .. 38324630

Gene Structure 5218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG320300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1010 bp

ATGGCCGCAATGCTTCAGCTGAGTCCTCTGGTCTCAGCCACCCCAAGTTTCATAGCTCCCACTAACCAAAACGAACCCAAAGCCATAGCCAAGGACACTTCCCCAACTGGGTCACTAAGAAACTGCAAAACCATAAACCAAGTGAAGCAACTTCACTGTCACATCACTAAGACAGGCTTCAGTCACACACCCTCTAATGTCACCAAGCTAATTAGCGCATGCGCCGAGATGGGCACCTTCGAAAGCTTAGATTATGCCCGGAAAGCCTTTAACTTGTTTCTTGAAGAAGAAGAAACTAAGGGTGTATTGTTCATGTATAATTCTCTCATAAGGGGTTACTCTAGTGCTGGGCTTTGTGACGAGGCTATTGGGCTTTATGTTCAGATGGTGCTTCAGGGTGTTTTGCCGGATAAGTTCACATTTCCGTTTGCGCTGAGCGCGTGCTCAAAGATTGTGGCTTTCTGTGAAGGTGTTCAGCTGCACGGGTCGCTTGTGAAGACGGGTTTGGAGGAAGATGTGTTTATTGGGAATTCTTTGATTCATTTCTATGCAGAATGTGGGCACTTGGATTATGCGCAGAAGAGCTGGCAACATCAGCTCATTCAGTGGATTTACTCTGAAAATGGGAAATACACATTCCTTCTGCACCCTGGAAGTTCGATCCTAATAAACACTGAGATGAAGAACTCGGTGTCGGATTGCAGTTTTTACATTAACAGTGAAGAAGAAGATGATGAGAAGGACAAGAAAAGCATAGAAGATGGGAATGATTCTGATTCATCGCGCCATTTCACTGACTTTATTTGGGCTCACATCTACGAAAGCTTCTCAACAGAAAAGAGAAGAAGAAATACCTGTGCTGTCTGTGTGGAGACAGTTAAATGGGTCGCATATGGGCCCTGTGGCTATCGAGAGGTCTGCTCTACCTGCATTTTTGCCTCTGTTTCATCTATGGATCTGCCTGCGCAAGATGCTTCAGGAGTAAGACTTGAAATAAAACTTTGGCATTG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

336

Amino Acids

37.54

Weight (kDa)

5.48

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	104 - 150	2.8e-08	PPR repeat family
PPR	PF01535	104 - 134	3.3e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	576, 966
Acc36I	ACCTGC	1 cut(s)	935
AccB1I	GGYRCC	1 cut(s)	233
AccII	CGCG	2 cut(s)	440, 784
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	2 cut(s)	655, 963
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	529
AcuI	CTGAAG	3 cut(s)	163, 377, 960
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	2 cut(s)	284, 992
AjnI	CCWGG	1 cut(s)	649
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
AluBI	AGCT	8 cut(s)	19, 56, 208, 246, 478, 585, 598, 825
AluI	AGCT	8 cut(s)	19, 56, 208, 246, 478, 585, 598, 825
Alw21I	GWGCWC	1 cut(s)	446
Alw26I	GTCTC	2 cut(s)	37, 866
AlwI	GGATC	2 cut(s)	655, 963
AoxI	GGCC	2 cut(s)	3, 896
ApaI	GGGCCC	1 cut(s)	900
ApeKI	GCWGC	1 cut(s)	478
ApoI	RAATTY	1 cut(s)	529
Asp700I	GAANNNNTTC	1 cut(s)	471
AspLEI	GCGC	7 cut(s)	218, 224, 433, 440, 577, 786, 967
AspS9I	GGNCC	2 cut(s)	896, 897
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	193
AsuII	TTCGAA	1 cut(s)	240
BaeGI	GKGCMC	3 cut(s)	236, 564, 900
BanI	GGYRCC	1 cut(s)	233
BanII	GRGCYC	2 cut(s)	811, 900
BarI	GAAGNNNNNNTAC	2 cut(s)	835, 867
BbsI	GAAGAC	1 cut(s)	503
Bbv12I	GWGCWC	1 cut(s)	446
BbvI	GCAGC	1 cut(s)	465
BccI	CCATC	3 cut(s)	223, 379, 755
BcgI	CGANNNNNNTGC	2 cut(s)	900, 934
BciT130I	CCWGG	1 cut(s)	651
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	37, 866
BfaI	CTAG	1 cut(s)	342
BfuAI	ACCTGC	1 cut(s)	935
BisI	GCNGC	2 cut(s)	6, 479
BlpI	GCTNAGC	1 cut(s)	434
BlsI	GCNGC	2 cut(s)	7, 480
Bme1390I	CCNGG	2 cut(s)	259, 651
BmgT120I	GGNCC	2 cut(s)	896, 897
BmiI	GGNNCC	2 cut(s)	235, 898
BmrFI	CCNGG	2 cut(s)	259, 651
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	961
BmuI	ACTGGG	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	503
BplI	GAGNNNNNCTC	2 cut(s)	905, 937
Bpu1102I	GCTNAGC	1 cut(s)	434
Bpu14I	TTCGAA	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	259
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	90, 649
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	112
Bse3DI	GCAATG	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	651
BseDI	CCNNGG	2 cut(s)	90, 649
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	4 cut(s)	11, 48, 425, 666
BseNI	ACTGG	1 cut(s)	112
BseSI	GKGCMC	3 cut(s)	236, 564, 900
BseXI	GCAGC	1 cut(s)	465
BseYI	CCCAGC	1 cut(s)	347
BsgI	GTGCAG	2 cut(s)	464, 629
Bsh1236I	CGCG	2 cut(s)	440, 784
BshFI	GGCC	2 cut(s)	5, 898
BshNI	GGYRCC	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	446
BsiSI	CCGG	2 cut(s)	259, 407
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	37, 866
BsnI	GGCC	2 cut(s)	5, 898
Bso31I	GGTCTC	1 cut(s)	37
Bsp119I	TTCGAA	1 cut(s)	240
Bsp120I	GGGCCC	1 cut(s)	896
Bsp1286I	GDGCHC	5 cut(s)	236, 446, 564, 811, 900
Bsp143I	GATC	2 cut(s)	660, 955
Bsp1720I	GCTNAGC	1 cut(s)	434
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	2 cut(s)	5, 898
BspCNI	CTCAG	4 cut(s)	12, 47, 426, 667
BspFNI	CGCG	2 cut(s)	440, 784
BspLI	GGNNCC	2 cut(s)	235, 898
BspMI	ACCTGC	1 cut(s)	935
BspPI	GGATC	2 cut(s)	655, 963
BspQI	GCTCTTC	1 cut(s)	575
BspT104I	TTCGAA	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	90, 649
BssMI	GATC	2 cut(s)	660, 955
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	651
Bst4CI	ACNGT	3 cut(s)	158, 719, 877
Bst6I	CTCTTC	1 cut(s)	575
BstBI	TTCGAA	1 cut(s)	240
BstC8I	GCNNGC	4 cut(s)	220, 442, 587, 963
BstDEI	CTNAG	8 cut(s)	20, 34, 116, 168, 247, 297, 434, 675
BstFNI	CGCG	2 cut(s)	440, 784
BstHHI	GCGC	7 cut(s)	218, 224, 433, 440, 577, 786, 967
BstKTI	GATC	2 cut(s)	663, 958
BstMAI	GTCTC	2 cut(s)	37, 866
BstMBI	GATC	2 cut(s)	660, 955
BstMWI	GCNNNNNNNGC	6 cut(s)	263, 437, 487, 595, 927, 971
BstNI	CCWGG	1 cut(s)	651
BstNSI	RCATGY	1 cut(s)	222
BstSCI	CCNGG	2 cut(s)	257, 649
BstSLI	GKGCMC	3 cut(s)	236, 564, 900
BstUI	CGCG	2 cut(s)	440, 784
BstV1I	GCAGC	1 cut(s)	465
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	1 cut(s)	955
BstYI	RGATCY	1 cut(s)	955
BsuRI	GGCC	2 cut(s)	5, 898
BtgZI	GCGATG	1 cut(s)	765
BtsIMutI	CAGTG	5 cut(s)	154, 611, 672, 724, 792
BveI	ACCTGC	1 cut(s)	935
Cac8I	GCNNGC	4 cut(s)	220, 442, 587, 963
CfoI	GCGC	7 cut(s)	218, 224, 433, 440, 577, 786, 967
Cfr13I	GGNCC	2 cut(s)	896, 897
CspCI	CAANNNNNGTGG	2 cut(s)	435, 470
CviAII	CATG	2 cut(s)	219, 313
DdeI	CTNAG	8 cut(s)	20, 34, 116, 168, 247, 297, 434, 675
DpnI	GATC	2 cut(s)	662, 957
DpnII	GATC	2 cut(s)	660, 955
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	575
EarI	CTCTTC	1 cut(s)	575
Eco130I	CCWWGG	1 cut(s)	90
Eco24I	GRGCYC	2 cut(s)	811, 900
Eco31I	GGTCTC	1 cut(s)	37
Eco57I	CTGAAG	3 cut(s)	163, 377, 960
EcoO109I	RGGNCCY	1 cut(s)	897
EcoRI	GAATTC	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	649
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	2 cut(s)	811, 900
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	222, 316
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	2 cut(s)	218, 312
FauNDI	CATATG	1 cut(s)	892
Fnu4HI	GCNGC	2 cut(s)	6, 479
FriOI	GRGCYC	2 cut(s)	811, 900
Fsp4HI	GCNGC	2 cut(s)	6, 479
FspBI	CTAG	1 cut(s)	342
FspI	TGCGCA	2 cut(s)	576, 966
GlaI	GCGC	7 cut(s)	217, 223, 432, 439, 576, 785, 966
GluI	GCNGC	2 cut(s)	6, 479
GsaI	CCCAGC	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	5, 898
HapII	CCGG	2 cut(s)	259, 407
HhaI	GCGC	7 cut(s)	218, 224, 433, 440, 577, 786, 967
Hin1II	CATG	2 cut(s)	222, 316
Hin6I	GCGC	7 cut(s)	216, 222, 431, 438, 575, 784, 965
HinP1I	GCGC	7 cut(s)	216, 222, 431, 438, 575, 784, 965
HindIII	AAGCTT	2 cut(s)	244, 823
HinfI	GANTC	4 cut(s)	22, 538, 770, 776
HpaII	CCGG	2 cut(s)	259, 407
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188I	TCNGA	4 cut(s)	384, 619, 697, 775
Hpy188III	TCNNGA	3 cut(s)	281, 911, 978
Hpy8I	GTNNAC	1 cut(s)	417
HpyAV	CCTTC	4 cut(s)	247, 461, 650, 733
HpyCH4III	ACNGT	3 cut(s)	158, 719, 877
HpyCH4V	TGCA	6 cut(s)	126, 481, 551, 646, 702, 930
HpyF10VI	GCNNNNNNNGC	6 cut(s)	263, 437, 487, 595, 927, 971
HpyF3I	CTNAG	8 cut(s)	20, 34, 116, 168, 247, 297, 434, 675
Hsp92II	CATG	2 cut(s)	222, 316
HspAI	GCGC	7 cut(s)	216, 222, 431, 438, 575, 784, 965
Kzo9I	GATC	2 cut(s)	660, 955
LguI	GCTCTTC	1 cut(s)	575
LmnI	GCTCC	1 cut(s)	61
Lsp1109I	GCAGC	1 cut(s)	465
LweI	GCATC	1 cut(s)	961
MaeI	CTAG	1 cut(s)	342
MaeIII	GTNAC	6 cut(s)	111, 158, 182, 199, 335, 356
MalI	GATC	2 cut(s)	662, 957
MboI	GATC	2 cut(s)	660, 955
MflI	RGATCY	1 cut(s)	955
MhlI	GDGCHC	5 cut(s)	236, 446, 564, 811, 900
MluCI	AATT	3 cut(s)	210, 319, 529
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	675
MnlI	CCTC	6 cut(s)	36, 202, 355, 502, 907, 949
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	3 cut(s)	270, 714, 879
MslI	CAYNNNNRTG	2 cut(s)	546, 677
MspA1I	CMGCKG	2 cut(s)	19, 478
MspI	CCGG	2 cut(s)	259, 407
MspR9I	CCNGG	2 cut(s)	259, 651
MvaI	CCWGG	1 cut(s)	651
MvnI	CGCG	2 cut(s)	440, 784
MwoI	GCNNNNNNNGC	6 cut(s)	263, 437, 487, 595, 927, 971
NciI	CCSGG	1 cut(s)	259
NdeI	CATATG	1 cut(s)	892
NdeII	GATC	2 cut(s)	660, 955
NlaIII	CATG	2 cut(s)	222, 316
NlaIV	GGNNCC	2 cut(s)	235, 898
NmeAIII	GCCGAG	1 cut(s)	250
NmuCI	GTSAC	5 cut(s)	111, 158, 182, 199, 356
NsbI	TGCGCA	2 cut(s)	576, 966
NspI	RCATGY	1 cut(s)	222
NspV	TTCGAA	1 cut(s)	240
PaeI	GCATGC	1 cut(s)	222
PciSI	GCTCTTC	1 cut(s)	575
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	3 cut(s)	538, 770, 776
PkrI	GCNGC	2 cut(s)	7, 480
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	649
PspFI	CCCAGC	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	649
PspN4I	GGNNCC	2 cut(s)	235, 898
PspOMI	GGGCCC	1 cut(s)	896
PspPI	GGNCC	2 cut(s)	896, 897
PsuI	RGATCY	1 cut(s)	955
PvuII	CAGCTG	2 cut(s)	19, 478
RseI	CAYNNNNRTG	2 cut(s)	546, 677
SapI	GCTCTTC	1 cut(s)	575
SaqAI	TTAA	3 cut(s)	270, 714, 879
SatI	GCNGC	2 cut(s)	6, 479
Sau3AI	GATC	2 cut(s)	660, 955
Sau96I	GGNCC	2 cut(s)	896, 897
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	259, 651
SduI	GDGCHC	5 cut(s)	236, 446, 564, 811, 900
SfaNI	GCATC	1 cut(s)	961
SfuI	TTCGAA	1 cut(s)	240
SmiMI	CAYNNNNRTG	2 cut(s)	546, 677
SphI	GCATGC	1 cut(s)	222
Sse9I	AATT	3 cut(s)	210, 319, 529
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	2 cut(s)	257, 649
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	3 cut(s)	158, 719, 877
TaqI	TCGA	3 cut(s)	240, 659, 910
TasI	AATT	3 cut(s)	210, 319, 529
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	538, 770, 776
Tru1I	TTAA	3 cut(s)	270, 714, 879
Tru9I	TTAA	3 cut(s)	270, 714, 879
TscAI	CASTG	5 cut(s)	161, 611, 679, 724, 799
TseFI	GTSAC	5 cut(s)	111, 158, 182, 199, 356
TseI	GCWGC	1 cut(s)	478
Tsp45I	GTSAC	5 cut(s)	111, 158, 182, 199, 356
TspDTI	ATGAA	6 cut(s)	40, 301, 530, 695, 768, 936
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	5 cut(s)	161, 611, 679, 724, 799
XapI	RAATTY	1 cut(s)	529
XceI	RCATGY	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.