Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

2254735 .. 2255251

Gene Structure 517 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36025

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCCTGAGAGAAATACTTTGAAGGATGTTGCGTTGAGTGACAGGGTGTGTGCTTGCATCGGGAAGTCTGGACTGAAGAGTAATATGCTTATGGTGAATTCACTTGTTGATGTGTTTATGAAATTTGGGGATACTAGTGCTGCAAAGTGGCTTTTTGATGAATGTGTGGATAAAAACTTGCGTTTTTACAGTGCGGTTTTGTCAAATTATGTGCGCCAGGGACTGGCTGGTGAAGCAGTTTCGGTGATGGGTGAAATGCTACAACAGGGCCTAAGACCAGACAAGGTTACCATGTTATCTGCAATCTCAGCTTGCGCACAACTGAGTGATTCTCTCACTGGAAAGTGTTGCCATGGTTATGTTCTAAGGAATGGACTAGAAGGTTGGGATACCATTTGCAATGCCATGATTGACATGTACATGAAGTGCGGCCTACAAGAGATGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

149

Amino Acids

16.34

Weight (kDa)

5.78

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	62 - 106	1.2e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	316
AccB7I	CCANNNNNTGG	1 cut(s)	223
AciI	CCGC	2 cut(s)	194, 429
AcsI	RAATTY	2 cut(s)	97, 122
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	1 cut(s)	22
AhlI	ACTAGT	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
AlwNI	CAGNNNCTG	1 cut(s)	223
AoxI	GGCC	3 cut(s)	268, 430, 444
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	2 cut(s)	97, 122
AspLEI	GCGC	2 cut(s)	216, 317
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	4 cut(s)	106, 242, 256, 263
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	2 cut(s)	241, 436
BciT130I	CCWGG	1 cut(s)	218
BciVI	GTATCC	2 cut(s)	124, 382
BcuI	ACTAGT	1 cut(s)	134
BfaI	CTAG	2 cut(s)	135, 377
BfuI	GTATCC	2 cut(s)	124, 382
BisI	GCNGC	2 cut(s)	141, 430
BlsI	GCNGC	2 cut(s)	142, 431
Bme1390I	CCNGG	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	316, 348
BsaJI	CCNNGG	2 cut(s)	217, 352
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	228, 343
Bse3DI	GCAATG	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	217, 352
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	406
BseMII	CTCAG	2 cut(s)	314, 321
BseNI	ACTGG	2 cut(s)	228, 343
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	3 cut(s)	270, 432, 446
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	234
BsnI	GGCC	3 cut(s)	270, 432, 446
Bsp1407I	TGTACA	1 cut(s)	417
Bsp19I	CCATGG	1 cut(s)	352
BspACI	CCGC	2 cut(s)	194, 429
BspANI	GGCC	3 cut(s)	270, 432, 446
BspCNI	CTCAG	2 cut(s)	315, 320
BsrDI	GCAATG	1 cut(s)	406
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	228, 343
BssECI	CCNNGG	2 cut(s)	217, 352
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	417
BstC8I	GCNNGC	2 cut(s)	55, 313
BstDEI	CTNAG	5 cut(s)	6, 272, 307, 323, 365
BstDSI	CCRYGG	1 cut(s)	352
BstEII	GGTNACC	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	31
BstHHI	GCGC	2 cut(s)	216, 317
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 308
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	418
BstPI	GGTNACC	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	127
BsuI	GTATCC	2 cut(s)	124, 382
BsuRI	GGCC	3 cut(s)	270, 432, 446
BtgI	CCRYGG	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	196, 336
Cac8I	GCNNGC	2 cut(s)	55, 313
CaiI	CAGNNNCTG	1 cut(s)	223
CfoI	GCGC	2 cut(s)	216, 317
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	5 cut(s)	292, 353, 406, 415, 421
CviJI	RGCY	6 cut(s)	151, 227, 270, 311, 432, 446
CviKI_1	RGCY	6 cut(s)	151, 227, 270, 311, 432, 446
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	5 cut(s)	6, 272, 307, 323, 365
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	95
Eco91I	GGTNACC	1 cut(s)	286
EcoO109I	RGGNCCY	1 cut(s)	268
EcoO65I	GGTNACC	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	5 cut(s)	295, 356, 409, 418, 424
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	5 cut(s)	291, 352, 405, 414, 420
Fnu4HI	GCNGC	2 cut(s)	141, 430
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	141, 430
FspBI	CTAG	2 cut(s)	135, 377
FspI	TGCGCA	1 cut(s)	316
GlaI	GCGC	2 cut(s)	215, 316
GluI	GCNGC	2 cut(s)	141, 430
HaeIII	GGCC	3 cut(s)	270, 432, 446
HhaI	GCGC	2 cut(s)	216, 317
Hin1II	CATG	5 cut(s)	295, 356, 409, 418, 424
Hin6I	GCGC	2 cut(s)	214, 315
HinP1I	GCGC	2 cut(s)	214, 315
HinfI	GANTC	1 cut(s)	329
HphI	GGTGA	4 cut(s)	106, 242, 256, 263
Hpy188III	TCNNGA	2 cut(s)	61, 69
HpyAV	CCTTC	2 cut(s)	16, 374
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	4 cut(s)	57, 143, 302, 399
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 308
HpyF3I	CTNAG	5 cut(s)	6, 272, 307, 323, 365
Hsp92II	CATG	5 cut(s)	295, 356, 409, 418, 424
HspAI	GCGC	2 cut(s)	214, 315
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	2 cut(s)	135, 377
MaeIII	GTNAC	2 cut(s)	38, 286
MboII	GAAGA	1 cut(s)	88
MluCI	AATT	3 cut(s)	97, 122, 205
MslI	CAYNNNNRTG	2 cut(s)	357, 419
MspR9I	CCNGG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	2 cut(s)	233, 308
NcoI	CCATGG	1 cut(s)	352
NlaIII	CATG	5 cut(s)	295, 356, 409, 418, 424
NmuCI	GTSAC	1 cut(s)	38
NsbI	TGCGCA	1 cut(s)	316
NspI	RCATGY	1 cut(s)	418
PciI	ACATGT	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	329
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	142, 431
PscI	ACATGT	1 cut(s)	414
Psp6I	CCWGG	1 cut(s)	216
PspEI	GGTNACC	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	223
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	2 cut(s)	357, 419
SatI	GCNGC	2 cut(s)	141, 430
Sau96I	GGNCC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	3 cut(s)	288, 313, 385
SfaNI	GCATC	1 cut(s)	66
SmiMI	CAYNNNNRTG	2 cut(s)	357, 419
SpeI	ACTAGT	1 cut(s)	134
Sse9I	AATT	3 cut(s)	97, 122, 205
SsiI	CCGC	2 cut(s)	194, 429
SspMI	CTAG	2 cut(s)	135, 377
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	1 cut(s)	191
TasI	AATT	3 cut(s)	97, 122, 205
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	1 cut(s)	432
TfiI	GAWTC	1 cut(s)	329
TscAI	CASTG	2 cut(s)	196, 343
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	3 cut(s)	134, 174, 437
TspRI	CASTG	2 cut(s)	196, 343
Van91I	CCANNNNNTGG	1 cut(s)	223
XapI	RAATTY	2 cut(s)	97, 122
XceI	RCATGY	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XspI	CTAG	2 cut(s)	135, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.