Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006648.1

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Forward (+)

28377 .. 29209

Gene Structure 833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006648.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgaaaggcctcagttacagaccctctagtgtcaccaagctcattagcacatgcgccgaaacgggtaccttcgaaagcttagactatgcccataaagcctttgacttgttgcttgaagaagaagaagaaacaaatgaatgtggggacttggagtatgcccagaaggtgtttgatgaaatgcttgagagaaacactgtgtcgtggactagtttgatttgtggttatggtagcaggaatatgccaaaggaggctgtttctttgtttttcgagatggtggctactgggatcaaacccaattcggtgactctggtgtgtgtcatttctgcttgtgcaaagttgaaggatgttgctttgagtgagaggtggtctagtggggtggttgatcaagagtttgcagcagacgtagccatagccaagtggcatttcaccttcaaaaccgaacagcttcagagcagccaaagtttgtgttttctatactttgttttactcctacactctccatctgaccgaagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

171

Amino Acids

19.14

Weight (kDa)

4.8

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	65
AclWI	GGATC	1 cut(s)	293
AcuI	CTGAAG	1 cut(s)	431
AfaI	GTAC	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	116, 340, 433
AhlI	ACTAGT	1 cut(s)	206
AjuI	GAANNNNNNNTTGG	2 cut(s)	407, 439
AluBI	AGCT	4 cut(s)	40, 78, 445, 513
AluI	AGCT	4 cut(s)	40, 78, 445, 513
AlwI	GGATC	1 cut(s)	293
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	2 cut(s)	395, 453
Asp700I	GAANNNNTTC	1 cut(s)	444
Asp718I	GGTACC	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	25, 313, 418
AsuII	TTCGAA	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	407, 465
BccI	CCATC	2 cut(s)	265, 508
BclI	TGATCA	1 cut(s)	382
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	3 cut(s)	27, 207, 369
BisI	GCNGC	2 cut(s)	396, 454
BlsI	GCNGC	2 cut(s)	397, 455
BmiI	GGNNCC	1 cut(s)	67
BmrI	ACTGGG	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	286
BseGI	GGATG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	25
BseNI	ACTGG	1 cut(s)	286
BseXI	GCAGC	2 cut(s)	407, 465
BshFI	GGCC	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	9
Bsp119I	TTCGAA	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	285, 382
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	67
BspPI	GGATC	1 cut(s)	293
BspT104I	TTCGAA	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	286
BssMI	GATC	2 cut(s)	285, 382
Bst4CI	ACNGT	1 cut(s)	196
BstBI	TTCGAA	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	11, 79
BstF5I	GGATG	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	2 cut(s)	288, 385
BstMBI	GATC	2 cut(s)	285, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 404
BstNSI	RCATGY	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	407, 465
BsuRI	GGCC	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	349
BtsIMutI	CAGTG	1 cut(s)	192
CfoI	GCGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	66
CviAII	CATG	1 cut(s)	51
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	2 cut(s)	11, 79
DpnI	GATC	2 cut(s)	287, 384
DpnII	GATC	2 cut(s)	285, 382
Eco147I	AGGCCT	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	431
FaeI	CATG	1 cut(s)	54
FaiI	YATR	8 cut(s)	52, 87, 93, 156, 225, 239, 410, 475
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	1 cut(s)	50
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	2 cut(s)	396, 454
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	2 cut(s)	396, 454
FspBI	CTAG	3 cut(s)	27, 207, 369
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	2 cut(s)	396, 454
HaeIII	GGCC	1 cut(s)	9
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	54
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	1 cut(s)	304
HphI	GGTGA	3 cut(s)	25, 313, 418
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	2 cut(s)	450, 505
Hpy188III	TCNNGA	2 cut(s)	268, 386
Hpy8I	GTNNAC	1 cut(s)	204
HpyAV	CCTTC	4 cut(s)	79, 157, 334, 439
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	2 cut(s)	332, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 404
HpyF3I	CTNAG	2 cut(s)	11, 79
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	1 cut(s)	54
HspAI	GCGC	1 cut(s)	54
KpnI	GGTACC	1 cut(s)	69
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	285, 382
LpnPI	CCDG	4 cut(s)	173, 217, 267, 293
Lsp1109I	GCAGC	2 cut(s)	407, 465
MaeI	CTAG	3 cut(s)	27, 207, 369
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	3 cut(s)	14, 31, 301
MalI	GATC	2 cut(s)	287, 384
MboI	GATC	2 cut(s)	285, 382
MboII	GAAGA	4 cut(s)	128, 131, 134, 137
MluCI	AATT	1 cut(s)	295
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	4 cut(s)	20, 34, 241, 354
MroXI	GAANNNNTTC	1 cut(s)	444
MwoI	GCNNNNNNNGC	2 cut(s)	95, 404
NdeII	GATC	2 cut(s)	285, 382
NlaIII	CATG	1 cut(s)	54
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	2 cut(s)	31, 301
NspI	RCATGY	1 cut(s)	54
NspV	TTCGAA	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	9
PdmI	GAANNNNTTC	1 cut(s)	444
PkrI	GCNGC	2 cut(s)	397, 455
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	67
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
SatI	GCNGC	2 cut(s)	396, 454
Sau3AI	GATC	2 cut(s)	285, 382
SchI	GAGTC	1 cut(s)	298
SetI	ASST	9 cut(s)	42, 71, 80, 168, 365, 405, 431, 447, 515
SfuI	TTCGAA	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SpeI	ACTAGT	1 cut(s)	206
Sse9I	AATT	1 cut(s)	295
SseBI	AGGCCT	1 cut(s)	9
SspMI	CTAG	3 cut(s)	27, 207, 369
StuI	AGGCCT	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	2 cut(s)	72, 267
TasI	AATT	1 cut(s)	295
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	2 cut(s)	31, 301
TseI	GCWGC	2 cut(s)	395, 453
Tsp45I	GTSAC	2 cut(s)	31, 301
TspDTI	ATGAA	3 cut(s)	17, 150, 189
TspRI	CASTG	1 cut(s)	199
XceI	RCATGY	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	3 cut(s)	27, 207, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.