Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

2253906 .. 2254169

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36023

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGTTGGTCTTTTGGAACAAGGGCGGAACATTTTCATGTCAATGCTCGGTCCATGGCAGTTCCCCTCATATCGTTCATTACGGTTGCATGGTTGATCTACTTGGCCAAGCAGGGCGCTTGGAAGAAGCTGTTGATCTGATAAAGCACATGTCCATGGAACCCAATGATGTCATTTGGGGTAGTCTCTTGGCTGAGTGTCGAACACACAAAAACATCGAAGTGGCAGCATATGCAGCTGAACAGATATCAAAGTTGACTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

87

Amino Acids

9.58

Weight (kDa)

5.87

Isoelectric Point (pI)

62.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	24
AcoI	YGGCCR	1 cut(s)	103
AflIII	ACRYGT	1 cut(s)	147
AluBI	AGCT	2 cut(s)	128, 236
AluI	AGCT	2 cut(s)	128, 236
Alw26I	GTCTC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	2 cut(s)	224, 233
Asp700I	GAANNNNTTC	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	236, 245
BcoDI	GTCTC	1 cut(s)	188
BfoI	RGCGCY	1 cut(s)	118
BisI	GCNGC	2 cut(s)	225, 234
BlsI	GCNGC	2 cut(s)	226, 235
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	52, 153
BseDI	CCNNGG	2 cut(s)	52, 153
BseMII	CTCAG	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	236, 245
BshFI	GGCC	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	94, 133
Bsp19I	CCATGG	2 cut(s)	52, 153
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	52, 153
BssMI	GATC	2 cut(s)	94, 133
BssT1I	CCWWGG	2 cut(s)	52, 153
Bst4CI	ACNGT	1 cut(s)	83
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	192, 261
BstDSI	CCRYGG	2 cut(s)	52, 153
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	2 cut(s)	97, 136
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	2 cut(s)	94, 133
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 233
BstNSI	RCATGY	1 cut(s)	151
BstV1I	GCAGC	2 cut(s)	236, 245
BsuRI	GGCC	1 cut(s)	105
BtgI	CCRYGG	2 cut(s)	52, 153
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	49
CviAII	CATG	5 cut(s)	36, 53, 88, 148, 154
CviJI	RGCY	4 cut(s)	105, 128, 191, 236
CviKI_1	RGCY	4 cut(s)	105, 128, 191, 236
DdeI	CTNAG	2 cut(s)	192, 261
DpnI	GATC	2 cut(s)	96, 135
DpnII	GATC	2 cut(s)	94, 133
EaeI	YGGCCR	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	39
Eco130I	CCWWGG	2 cut(s)	52, 153
Eco32I	GATATC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	246
EcoT14I	CCWWGG	2 cut(s)	52, 153
ErhI	CCWWGG	2 cut(s)	52, 153
FaeI	CATG	5 cut(s)	39, 56, 91, 151, 157
FaiI	YATR	8 cut(s)	37, 54, 69, 89, 149, 155, 229, 231
FatI	CATG	5 cut(s)	35, 52, 87, 147, 153
FauNDI	CATATG	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	225, 234
Fsp4HI	GCNGC	2 cut(s)	225, 234
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	2 cut(s)	225, 234
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	105
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	5 cut(s)	39, 56, 91, 151, 157
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	1 cut(s)	138
Hpy8I	GTNNAC	1 cut(s)	255
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	2 cut(s)	87, 233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 233
HpyF3I	CTNAG	2 cut(s)	192, 261
Hsp92II	CATG	5 cut(s)	39, 56, 91, 151, 157
HspAI	GCGC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	94, 133
LpnPI	CCDG	1 cut(s)	96
Lsp1109I	GCAGC	2 cut(s)	236, 245
MalI	GATC	2 cut(s)	96, 135
MboI	GATC	2 cut(s)	94, 133
MboII	GAAGA	1 cut(s)	134
MlsI	TGGCCA	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	105
MnlI	CCTC	1 cut(s)	75
Mox20I	TGGCCA	1 cut(s)	105
MroXI	GAANNNNTTC	1 cut(s)	31
MscI	TGGCCA	1 cut(s)	105
MslI	CAYNNNNRTG	4 cut(s)	34, 40, 152, 218
Msp20I	TGGCCA	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	236
MwoI	GCNNNNNNNGC	2 cut(s)	230, 233
NcoI	CCATGG	2 cut(s)	52, 153
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	2 cut(s)	94, 133
NlaIII	CATG	5 cut(s)	39, 56, 91, 151, 157
NlaIV	GGNNCC	1 cut(s)	159
NspI	RCATGY	1 cut(s)	151
PciI	ACATGT	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	226, 235
PscI	ACATGT	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	236
RseI	CAYNNNNRTG	4 cut(s)	34, 40, 152, 218
SatI	GCNGC	2 cut(s)	225, 234
Sau3AI	GATC	2 cut(s)	94, 133
Sau96I	GGNCC	1 cut(s)	49
SetI	ASST	2 cut(s)	130, 238
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	4 cut(s)	34, 40, 152, 218
SsiI	CCGC	1 cut(s)	24
StyI	CCWWGG	2 cut(s)	52, 153
TaaI	ACNGT	1 cut(s)	83
TaqI	TCGA	2 cut(s)	199, 216
TaqII	GACCGA	1 cut(s)	37
TseI	GCWGC	2 cut(s)	224, 233
TspDTI	ATGAA	2 cut(s)	24, 65
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.