Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Forward (+)

32692614 .. 32701569

Gene Structure 8956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0307800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2007 bp

ATGGCAGCTGCTGCTGAGCTCTTCTTGTCTTACAGCGGAGGCGGAGGCGGAGGCGGAGGAACCTCCGCTCTGTCCAAAACCCTATCTCTTGTTTCTTCCCCATTTCCCAGATCAATTCTTCATCTTCTCCGCACCACTCCCTCCTCCCCTTCCCTTTCCCTTTCCCTTTCCCTTTCCCACCACCACGCTTCTCGTCTTCCTCTCCGCTTGCTCTCCGCCACTGATCATCTCGACGTTTCCCTAACAGACGACGACGACGAAGAACAAGAACTAGAACCAGAAGCAGAAGCAGAAGCAGAAGAGTCCGACGTCGATTTGGACCTCGACGCCCTCGAACAAGACGCCTTTCTCGCCGTCCGAGACTTCTCTTCATCTCTCTCCAACCAGCTCACAATCGAAGATGAGAAAACTGATCAAGAGGCACTCGGCCGAAACCGGAGCCGGAGGAGGCAGAAAACTCCAATCAAAAATAAAACTATCCCTGATCATCTTCTTCCAAGAGTTGCAATTGTTGGAAGACCGAATGTTGGTAAATCAGCATTATTCAATCGACTTGTCTCGGGGAACAAGGCAATTGTAGTTGATGAACCAGGGGTTACTAGGGATCGTCTGTATGGTAGATCCTTTTGGGGGGACTTTGAATTTATGGTGGTCGATACTGGTGGTGTTCTTACAGTTTCAAAGTCACAGGCCAATGTCATGGAAGAACTGGCCATTTCAACAACCATTGGTATGGATGGAATTCCACTTGCCTCCAGAGAGGCAGCGGTTGCAAGGATGCCCTCAATGATTGAGAAACAAGCTACTGCAGCTGTTGAAGAGTCATCTGTCATTATTTTTCTTGTTGATGGCCAGGCTGGTCTAACTGCGGCTGATGAGGAAATTTCAGATTGGCTACGTAGGAACTTCTCAGATAAGTACATCATTCTTGCAGTCAACAAATGTGAATCTCCACGTAAAGGAGTCATGCAAGCATCAGAGTTTTGGTCCTTGGGGTTTTCGCCGCTTCCTATATCTGCTATATCTGGAACTGGAACCGGAGAGCTTCTCGATCTTGTGTGTTCAGGCCTAAAAAAGATTGAGGATCCTGATGATTTTGCTGAACAAGAAGATTATGTTCCTGCAATTGCAATTGTTGGTCGACCAAATGTTGGTAAAAGTAGCATTTTGAACGCGTTGGTTGGAGAGGACAGGACAATTGTTAGCCCAGTCAGTGGAACTACTCGCGATGCTATTGATATTGAATTCACTGGACCAGATGAACAGAAGTTCCGGCTTATTGACACTGCCGGAATCAGAAGAAAAGCCGTTGTTGCTTCATCAGGTAGTGTGACGGAGGCTTTATCGGTTAATCGAGCATTTCGTGCCATTCGCCGTTCTGATGTTGTGGCTCTTGTCATTGAGGCCATGGCTTGTATCACAGAACAGGATTGCAAGATTGCTGAAAGGATAGAAAGAGAAGGGAAAGGTTGCCTGATAGTTGTAAACAAATGGGACACTATACCAAATAAAAACCAGCAGACTGCAACATACTACGAGCAGGATGTTAGGGAAAAGCTTCGTATTCTCGATTGGGCGCCGGTTGTATATTCAACTGCACTAGCTGGTCGTAGTGTTGATAAAATTATCATGGCTGCTAGCACTGTTGAGAAAGAACGGTCAAGAAGGCTTACGACTGCTGTGGTAAATCAAGTGGTACAGGAGGCACTAGCTTTTAAATCACCACCTAGGACACGAGGTGGCAAAAGAGGACGTATTTATTACAGCACTCAGGCTGCTATAAGGCCACCAACATTTGTATTCTTTGTTAATGATGCGAAACTTTTCCCTGAAACTTATCGTCGCTATATGGAGAAGCAACTGCGTTCAGATGCTGGGTTTGCGGGTACTCCAATTCGCCTTTTATGGAGCAACAGGAGGAAGACAGAAAGAGATGAAGGGAGAGCTACAACAAGGACAAAAGGGAATCTTGTGCCACGTGACAAAAAATTGGAATTAGCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

668

Amino Acids

73.21

Weight (kDa)

5.74

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	167 - 314	7.6e-23	50S ribosome-binding GTPase
FeoB_N	PF02421	167 - 229	1.5e-07	Ferrous iron transport protein B
MMR_HSR1	PF01926	376 - 497	6.1e-27	50S ribosome-binding GTPase
FeoB_N	PF02421	376 - 542	3.1e-09	Ferrous iron transport protein B
KH_dom-like	PF14714	556 - 636	5.6e-28	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	1576
AccB7I	CCANNNNNTGG	2 cut(s)	1151, 1214
AccBSI	CCGCTC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	1141
AccII	CGCG	2 cut(s)	1175, 1227
AclWI	GGATC	4 cut(s)	612, 615, 1079, 1092
AcoI	YGGCCR	3 cut(s)	427, 711, 850
AcsI	RAATTY	4 cut(s)	641, 741, 882, 1244
AcvI	CACGTG	1 cut(s)	1979
AcyI	GRCGYC	4 cut(s)	309, 327, 342, 1577
AdeI	CACNNNGTG	1 cut(s)	1739
AfaI	GTAC	3 cut(s)	920, 1698, 1888
AfiI	CCNNNNNNNGG	5 cut(s)	527, 630, 959, 1151, 1214
AflIII	ACRYGT	1 cut(s)	1173
AgsI	TTSAA	8 cut(s)	547, 641, 681, 720, 818, 1171, 1244, 1593
AjnI	CCWGG	2 cut(s)	589, 852
AloI	GAACNNNNNNTCC	2 cut(s)	1254, 1286
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	2 cut(s)	354, 562
AlwI	GGATC	4 cut(s)	612, 615, 1079, 1092
AlwNI	CAGNNNCTG	2 cut(s)	11, 1874
Ama87I	CYCGRG	1 cut(s)	559
AoxI	GGCC	7 cut(s)	427, 690, 711, 850, 1066, 1404, 1784
ApeKI	GCWGC	7 cut(s)	5, 8, 11, 764, 809, 1634, 1775
ApoI	RAATTY	4 cut(s)	641, 741, 882, 1244
Asp700I	GAANNNNTTC	2 cut(s)	1557, 1823
AspA2I	CCTAGG	1 cut(s)	1727
AspLEI	GCGC	1 cut(s)	1579
AspS9I	GGNCC	3 cut(s)	319, 987, 1253
AsuHPI	GGTGA	1 cut(s)	1713
AsuNHI	GCTAGC	1 cut(s)	1637
AvaI	CYCGRG	1 cut(s)	559
AvaII	GGWCC	3 cut(s)	319, 987, 1253
AvrII	CCTAGG	1 cut(s)	1727
BalI	TGGCCA	2 cut(s)	713, 852
BamHI	GGATCC	1 cut(s)	1084
BanI	GGYRCC	1 cut(s)	1576
BanII	GRGCYC	1 cut(s)	21
BauI	CACGAG	1 cut(s)	1734
BbrPI	CACGTG	1 cut(s)	1979
BbsI	GAAGAC	3 cut(s)	188, 523, 1928
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	5 cut(s)	17, 776, 821, 1621, 1762
BccI	CCATC	2 cut(s)	731, 842
BceAI	ACGGC	3 cut(s)	338, 1292, 1359
BciT130I	CCWGG	2 cut(s)	591, 854
BclI	TGATCA	3 cut(s)	223, 412, 484
BcoDI	GTCTC	2 cut(s)	354, 562
BfaI	CTAG	6 cut(s)	272, 600, 1601, 1638, 1709, 1728
BfmI	CTRYAG	1 cut(s)	807
BfoI	RGCGCY	1 cut(s)	1580
BisI	GCNGC	9 cut(s)	6, 9, 12, 765, 810, 870, 1004, 1635, 1776
BlnI	CCTAGG	1 cut(s)	1727
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	9 cut(s)	7, 10, 13, 766, 811, 871, 1005, 1636, 1777
Bme1390I	CCNGG	2 cut(s)	591, 854
Bme18I	GGWCC	3 cut(s)	319, 987, 1253
BmeT110I	CYCGRG	1 cut(s)	559
BmgT120I	GGNCC	3 cut(s)	319, 987, 1253
BmiI	GGNNCC	5 cut(s)	61, 440, 1036, 1086, 1578
BmrFI	CCNGG	2 cut(s)	591, 854
BmrI	ACTGGG	1 cut(s)	1202
BmsI	GCATC	5 cut(s)	768, 983, 1219, 1804, 1861
BmtI	GCTAGC	1 cut(s)	1641
BmuI	ACTGGG	1 cut(s)	1202
BpiI	GAAGAC	3 cut(s)	188, 523, 1928
BplI	GAGNNNNNCTC	2 cut(s)	1032, 1064
BpmI	CTGGAG	1 cut(s)	739
Bpu1102I	GCTNAGC	1 cut(s)	15
BsaAI	YACGTR	3 cut(s)	899, 956, 1979
BsaHI	GRCGYC	4 cut(s)	309, 327, 342, 1577
BsaJI	CCNNGG	4 cut(s)	590, 990, 1407, 1727
BsaWI	WCCGGW	2 cut(s)	435, 1037
Bsc4I	CCNNNNNNNGG	5 cut(s)	527, 630, 959, 1151, 1214
Bse118I	RCCGGY	1 cut(s)	1579
Bse1I	ACTGG	5 cut(s)	664, 714, 1036, 1208, 1255
BseBI	CCWGG	2 cut(s)	591, 854
BseDI	CCNNGG	4 cut(s)	590, 990, 1407, 1727
BseGI	GGATG	3 cut(s)	742, 783, 1549
BseLI	CCNNNNNNNGG	5 cut(s)	527, 630, 959, 1151, 1214
BseMII	CTCAG	3 cut(s)	6, 924, 1784
BseNI	ACTGG	5 cut(s)	664, 714, 1036, 1208, 1255
BseRI	GAGGAG	2 cut(s)	133, 460
BseX3I	CGGCCG	1 cut(s)	427
BseXI	GCAGC	5 cut(s)	17, 776, 821, 1621, 1762
BseYI	CCCAGC	1 cut(s)	1874
BsgI	GTGCAG	1 cut(s)	1581
Bsh1236I	CGCG	2 cut(s)	1175, 1227
Bsh1285I	CGRYCG	1 cut(s)	430
BshFI	GGCC	7 cut(s)	429, 692, 713, 852, 1068, 1406, 1786
BshNI	GGYRCC	1 cut(s)	1576
BsiEI	CGRYCG	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	559
BsiSI	CCGG	6 cut(s)	436, 442, 1038, 1273, 1290, 1580
BslFI	GGGAC	2 cut(s)	647, 1508
BslI	CCNNNNNNNGG	5 cut(s)	527, 630, 959, 1151, 1214
BsmAI	GTCTC	2 cut(s)	354, 562
BsmFI	GGGAC	2 cut(s)	647, 1508
BsnI	GGCC	7 cut(s)	429, 692, 713, 852, 1068, 1406, 1786
BsoBI	CYCGRG	1 cut(s)	559
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	8 cut(s)	110, 223, 412, 484, 604, 620, 1051, 1084
Bsp1720I	GCTNAGC	1 cut(s)	15
Bsp19I	CCATGG	1 cut(s)	1407
Bsp68I	TCGCGA	1 cut(s)	1227
BspANI	GGCC	7 cut(s)	429, 692, 713, 852, 1068, 1406, 1786
BspCNI	CTCAG	3 cut(s)	7, 923, 1783
BspFNI	CGCG	2 cut(s)	1175, 1227
BspLI	GGNNCC	5 cut(s)	61, 440, 1036, 1086, 1578
BspMAI	CTGCAG	1 cut(s)	811
BspOI	GCTAGC	1 cut(s)	1641
BspPI	GGATC	4 cut(s)	612, 615, 1079, 1092
BspQI	GCTCTTC	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	1576
BsrBI	CCGCTC	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	1579
BsrI	ACTGG	5 cut(s)	664, 714, 1036, 1208, 1255
BssAI	RCCGGY	1 cut(s)	1579
BssECI	CCNNGG	4 cut(s)	590, 990, 1407, 1727
BssMI	GATC	8 cut(s)	110, 223, 412, 484, 604, 620, 1051, 1084
BssNI	GRCGYC	4 cut(s)	309, 327, 342, 1577
BssSI	CACGAG	1 cut(s)	1734
BssT1I	CCWWGG	3 cut(s)	990, 1407, 1727
Bst2BI	CACGAG	1 cut(s)	1734
Bst2UI	CCWGG	2 cut(s)	591, 854
Bst4CI	ACNGT	3 cut(s)	676, 1645, 1659
Bst6I	CTCTTC	4 cut(s)	26, 294, 373, 813
BstACI	GRCGYC	4 cut(s)	309, 327, 342, 1577
BstAPI	GCANNNNNTGC	3 cut(s)	11, 770, 1364
BstBAI	YACGTR	3 cut(s)	899, 956, 1979
BstC8I	GCNNGC	3 cut(s)	209, 972, 1639
BstDEI	CTNAG	3 cut(s)	15, 910, 1770
BstDSI	CCRYGG	1 cut(s)	1407
BstF5I	GGATG	3 cut(s)	742, 783, 1549
BstFNI	CGCG	2 cut(s)	1175, 1227
BstH2I	RGCGCY	1 cut(s)	1580
BstHHI	GCGC	1 cut(s)	1579
BstKTI	GATC	8 cut(s)	113, 226, 415, 487, 607, 623, 1054, 1087
BstMAI	GTCTC	2 cut(s)	354, 562
BstMBI	GATC	8 cut(s)	110, 223, 412, 484, 604, 620, 1051, 1084
BstMCI	CGRYCG	1 cut(s)	430
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 350, 770, 809, 1313, 1364, 1880
BstNI	CCWGG	2 cut(s)	591, 854
BstSCI	CCNGG	2 cut(s)	589, 852
BstSFI	CTRYAG	1 cut(s)	807
BstSNI	TACGTA	1 cut(s)	899
BstUI	CGCG	2 cut(s)	1175, 1227
BstV1I	GCAGC	5 cut(s)	17, 776, 821, 1621, 1762
BstV2I	GAAGAC	3 cut(s)	188, 523, 1928
BstX2I	RGATCY	2 cut(s)	620, 1084
BstXI	CCANNNNNNTGG	2 cut(s)	700, 733
BstYI	RGATCY	2 cut(s)	620, 1084
BstZI	CGGCCG	1 cut(s)	427
BsuRI	GGCC	7 cut(s)	429, 692, 713, 852, 1068, 1406, 1786
BtgI	CCRYGG	1 cut(s)	1407
BtgZI	GCGATG	1 cut(s)	1242
BtsCI	GGATG	3 cut(s)	742, 783, 1549
BtsI	GCAGTG	1 cut(s)	1284
BtsIMutI	CAGTG	5 cut(s)	219, 1219, 1248, 1284, 1641
BtuMI	TCGCGA	1 cut(s)	1227
Cac8I	GCNNGC	3 cut(s)	209, 972, 1639
CaiI	CAGNNNCTG	2 cut(s)	11, 1874
CfoI	GCGC	1 cut(s)	1579
Cfr10I	RCCGGY	1 cut(s)	1579
Cfr13I	GGNCC	3 cut(s)	319, 987, 1253
CseI	GACGC	2 cut(s)	335, 350
Csp6I	GTAC	3 cut(s)	919, 1697, 1887
CviAII	CATG	5 cut(s)	700, 967, 1408, 1630, 2004
CviQI	GTAC	3 cut(s)	919, 1697, 1887
DdeI	CTNAG	3 cut(s)	15, 910, 1770
DinI	GGCGCC	1 cut(s)	1578
DpnI	GATC	8 cut(s)	112, 225, 414, 486, 606, 622, 1053, 1086
DpnII	GATC	8 cut(s)	110, 223, 412, 484, 604, 620, 1051, 1084
DraI	TTTAAA	1 cut(s)	1717
DraIII	CACNNNGTG	1 cut(s)	1739
EaeI	YGGCCR	3 cut(s)	427, 711, 850
EagI	CGGCCG	1 cut(s)	427
Eam1104I	CTCTTC	4 cut(s)	26, 294, 373, 813
EarI	CTCTTC	4 cut(s)	26, 294, 373, 813
EciI	GGCGGA	4 cut(s)	57, 63, 69, 205
Ecl136II	GAGCTC	1 cut(s)	19
EclXI	CGGCCG	1 cut(s)	427
Eco105I	TACGTA	1 cut(s)	899
Eco130I	CCWWGG	3 cut(s)	990, 1407, 1727
Eco147I	AGGCCT	1 cut(s)	1068
Eco24I	GRGCYC	1 cut(s)	21
Eco47I	GGWCC	3 cut(s)	319, 987, 1253
Eco52I	CGGCCG	1 cut(s)	427
Eco53kI	GAGCTC	1 cut(s)	19
Eco72I	CACGTG	1 cut(s)	1979
Eco88I	CYCGRG	1 cut(s)	559
EcoICRI	GAGCTC	1 cut(s)	19
EcoRI	GAATTC	2 cut(s)	741, 1244
EcoRII	CCWGG	2 cut(s)	589, 852
EcoT14I	CCWWGG	3 cut(s)	990, 1407, 1727
EcoT38I	GRGCYC	1 cut(s)	21
EgeI	GGCGCC	1 cut(s)	1578
EheI	GGCGCC	1 cut(s)	1578
ErhI	CCWWGG	3 cut(s)	990, 1407, 1727
FaeI	CATG	5 cut(s)	703, 970, 1411, 1633, 2007
FalI	AAGNNNNNCTT	2 cut(s)	1953, 1985
FaqI	GGGAC	2 cut(s)	647, 1508
FatI	CATG	5 cut(s)	699, 966, 1407, 1629, 2003
FauI	CCCGC	1 cut(s)	1876
FbaI	TGATCA	3 cut(s)	223, 412, 484
FblI	GTMKAC	1 cut(s)	1141
Fnu4HI	GCNGC	9 cut(s)	6, 9, 12, 765, 810, 870, 1004, 1635, 1776
FokI	GGATG	3 cut(s)	749, 790, 1556
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	9 cut(s)	6, 9, 12, 765, 810, 870, 1004, 1635, 1776
FspBI	CTAG	6 cut(s)	272, 600, 1601, 1638, 1709, 1728
GlaI	GCGC	1 cut(s)	1578
GluI	GCNGC	9 cut(s)	6, 9, 12, 765, 810, 870, 1004, 1635, 1776
GsaI	CCCAGC	1 cut(s)	1878
GsuI	CTGGAG	1 cut(s)	739
HaeII	RGCGCY	1 cut(s)	1580
HaeIII	GGCC	7 cut(s)	429, 692, 713, 852, 1068, 1406, 1786
HapII	CCGG	6 cut(s)	436, 442, 1038, 1273, 1290, 1580
HgaI	GACGC	2 cut(s)	335, 350
HhaI	GCGC	1 cut(s)	1579
Hin1I	GRCGYC	4 cut(s)	309, 327, 342, 1577
Hin1II	CATG	5 cut(s)	703, 970, 1411, 1633, 2007
Hin6I	GCGC	1 cut(s)	1577
HinP1I	GCGC	1 cut(s)	1577
HincII	GTYRAC	2 cut(s)	937, 1142
HindII	GTYRAC	2 cut(s)	937, 1142
HindIII	AAGCTT	1 cut(s)	1556
HinfI	GANTC	6 cut(s)	302, 821, 947, 963, 1293, 1966
HpaII	CCGG	6 cut(s)	436, 442, 1038, 1273, 1290, 1580
HphI	GGTGA	1 cut(s)	1713
Hpy166II	GTNNAC	3 cut(s)	937, 1142, 1486
Hpy188I	TCNGA	8 cut(s)	307, 359, 889, 913, 979, 1298, 1381, 1870
Hpy188III	TCNNGA	9 cut(s)	230, 416, 756, 1026, 1049, 1088, 1226, 1568, 1662
Hpy8I	GTNNAC	3 cut(s)	937, 1142, 1486
Hpy99I	CGWCG	8 cut(s)	236, 254, 257, 260, 311, 314, 329, 1845
HpyAV	CCTTC	4 cut(s)	159, 1454, 1659, 1931
HpyCH4III	ACNGT	3 cut(s)	676, 1645, 1659
HpyCH4IV	ACGT	6 cut(s)	234, 309, 898, 955, 1753, 1978
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 350, 770, 809, 1313, 1364, 1880
HpyF3I	CTNAG	3 cut(s)	15, 910, 1770
HpySE526I	ACGT	6 cut(s)	234, 309, 898, 955, 1753, 1978
Hsp92I	GRCGYC	4 cut(s)	309, 327, 342, 1577
Hsp92II	CATG	5 cut(s)	703, 970, 1411, 1633, 2007
HspAI	GCGC	1 cut(s)	1577
KasI	GGCGCC	1 cut(s)	1576
Ksp22I	TGATCA	3 cut(s)	223, 412, 484
Kzo9I	GATC	8 cut(s)	110, 223, 412, 484, 604, 620, 1051, 1084
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	2 cut(s)	438, 1908
Lsp1109I	GCAGC	5 cut(s)	17, 776, 821, 1621, 1762
LweI	GCATC	5 cut(s)	768, 983, 1219, 1804, 1861
MaeI	CTAG	6 cut(s)	272, 600, 1601, 1638, 1709, 1728
MaeII	ACGT	6 cut(s)	234, 309, 898, 955, 1753, 1978
MaeIII	GTNAC	4 cut(s)	595, 684, 1330, 1979
MalI	GATC	8 cut(s)	112, 225, 414, 486, 606, 622, 1053, 1086
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	8 cut(s)	110, 223, 412, 484, 604, 620, 1051, 1084
MfeI	CAATTG	5 cut(s)	507, 573, 1125, 1131, 1197
MflI	RGATCY	2 cut(s)	620, 1084
MhlI	GDGCHC	1 cut(s)	21
MlsI	TGGCCA	2 cut(s)	713, 852
MluI	ACGCGT	1 cut(s)	1173
MluNI	TGGCCA	2 cut(s)	713, 852
Mly113I	GGCGCC	1 cut(s)	1577
MlyI	GAGTC	3 cut(s)	311, 830, 972
MmeI	TCCRAC	4 cut(s)	330, 405, 493, 1162
Mox20I	TGGCCA	2 cut(s)	713, 852
MroXI	GAANNNNTTC	2 cut(s)	1557, 1823
MscI	TGGCCA	2 cut(s)	713, 852
MseI	TTAA	3 cut(s)	1350, 1716, 1809
MslI	CAYNNNNRTG	1 cut(s)	731
Msp20I	TGGCCA	2 cut(s)	713, 852
MspA1I	CMGCKG	4 cut(s)	8, 36, 767, 812
MspI	CCGG	6 cut(s)	436, 442, 1038, 1273, 1290, 1580
MspR9I	CCNGG	2 cut(s)	591, 854
MunI	CAATTG	5 cut(s)	507, 573, 1125, 1131, 1197
MvaI	CCWGG	2 cut(s)	591, 854
MvnI	CGCG	2 cut(s)	1175, 1227
MwoI	GCNNNNNNNGC	7 cut(s)	11, 350, 770, 809, 1313, 1364, 1880
NarI	GGCGCC	1 cut(s)	1577
NcoI	CCATGG	1 cut(s)	1407
NdeII	GATC	8 cut(s)	110, 223, 412, 484, 604, 620, 1051, 1084
NheI	GCTAGC	1 cut(s)	1637
NlaIII	CATG	5 cut(s)	703, 970, 1411, 1633, 2007
NlaIV	GGNNCC	5 cut(s)	61, 440, 1036, 1086, 1578
NmeAIII	GCCGAG	1 cut(s)	405
NmuCI	GTSAC	3 cut(s)	684, 1330, 1979
NruI	TCGCGA	1 cut(s)	1227
PceI	AGGCCT	1 cut(s)	1068
PciSI	GCTCTTC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	3 cut(s)	255, 330, 1360
PdmI	GAANNNNTTC	2 cut(s)	1557, 1823
PfeI	GAWTC	3 cut(s)	947, 1293, 1966
PflMI	CCANNNNNTGG	2 cut(s)	1151, 1214
PkrI	GCNGC	9 cut(s)	7, 10, 13, 766, 811, 871, 1005, 1636, 1777
PleI	GAGTC	3 cut(s)	310, 829, 971
PluTI	GGCGCC	1 cut(s)	1580
PmaCI	CACGTG	1 cut(s)	1979
PmlI	CACGTG	1 cut(s)	1979
PpsI	GAGTC	3 cut(s)	310, 829, 971
Ppu21I	YACGTR	3 cut(s)	899, 956, 1979
Psp124BI	GAGCTC	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	589, 852
PspCI	CACGTG	1 cut(s)	1979
PspFI	CCCAGC	1 cut(s)	1874
PspGI	CCWGG	2 cut(s)	589, 852
PspN4I	GGNNCC	5 cut(s)	61, 440, 1036, 1086, 1578
PspPI	GGNCC	3 cut(s)	319, 987, 1253
PstI	CTGCAG	1 cut(s)	811
PstNI	CAGNNNCTG	2 cut(s)	11, 1874
PsuI	RGATCY	2 cut(s)	620, 1084
PvuII	CAGCTG	2 cut(s)	8, 812
RruI	TCGCGA	1 cut(s)	1227
RsaI	GTAC	3 cut(s)	920, 1698, 1888
RsaNI	GTAC	3 cut(s)	919, 1697, 1887
RseI	CAYNNNNRTG	1 cut(s)	731
SacI	GAGCTC	1 cut(s)	21
SalI	GTCGAC	1 cut(s)	1140
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	1350, 1716, 1809
SatI	GCNGC	9 cut(s)	6, 9, 12, 765, 810, 870, 1004, 1635, 1776
Sau3AI	GATC	8 cut(s)	110, 223, 412, 484, 604, 620, 1051, 1084
Sau96I	GGNCC	3 cut(s)	319, 987, 1253
SchI	GAGTC	3 cut(s)	311, 830, 972
ScrFI	CCNGG	2 cut(s)	591, 854
SduI	GDGCHC	1 cut(s)	21
SfaNI	GCATC	5 cut(s)	768, 983, 1219, 1804, 1861
SfcI	CTRYAG	1 cut(s)	807
SfoI	GGCGCC	1 cut(s)	1578
SinI	GGWCC	3 cut(s)	319, 987, 1253
SmiMI	CAYNNNNRTG	1 cut(s)	731
SnaBI	TACGTA	1 cut(s)	899
SseBI	AGGCCT	1 cut(s)	1068
SspDI	GGCGCC	1 cut(s)	1576
SspMI	CTAG	6 cut(s)	272, 600, 1601, 1638, 1709, 1728
SstI	GAGCTC	1 cut(s)	21
StuI	AGGCCT	1 cut(s)	1068
StyD4I	CCNGG	2 cut(s)	589, 852
StyI	CCWWGG	3 cut(s)	990, 1407, 1727
TaaI	ACNGT	3 cut(s)	676, 1645, 1659
TaiI	ACGT	6 cut(s)	237, 312, 901, 958, 1756, 1981
TaqII	GACCGA	1 cut(s)	535
TatI	WGTACW	1 cut(s)	918
TauI	GCSGC	2 cut(s)	872, 1006
TfiI	GAWTC	3 cut(s)	947, 1293, 1966
Tru1I	TTAA	3 cut(s)	1350, 1716, 1809
Tru9I	TTAA	3 cut(s)	1350, 1716, 1809
TscAI	CASTG	5 cut(s)	226, 1219, 1255, 1291, 1648
TseFI	GTSAC	3 cut(s)	684, 1330, 1979
TseI	GCWGC	7 cut(s)	5, 8, 11, 764, 809, 1634, 1775
Tsp45I	GTSAC	3 cut(s)	684, 1330, 1979
TspDTI	ATGAA	6 cut(s)	110, 360, 600, 1275, 1308, 1950
TspGWI	ACGGA	1 cut(s)	1349
TspRI	CASTG	5 cut(s)	226, 1219, 1255, 1291, 1648
Van91I	CCANNNNNTGG	2 cut(s)	1151, 1214
VpaK11BI	GGWCC	3 cut(s)	319, 987, 1253
XapI	RAATTY	4 cut(s)	641, 741, 882, 1244
XmaJI	CCTAGG	1 cut(s)	1727
XmiI	GTMKAC	1 cut(s)	1141
XmnI	GAANNNNTTC	2 cut(s)	1557, 1823
XspI	CTAG	6 cut(s)	272, 600, 1601, 1638, 1709, 1728
ZraI	GACGTC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.