Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

18643079 .. 18643402

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55845

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGGTTTGGAGGAAGATGTGTTTATTGGGGATTCTTTGATTCATTTCTATGCAGAGTGTGGGGACTTGGATTATGCTCAGAAGGTGTTTGATGAAATGCTTGAAAAATATACTGTGTCGTGGACTAGTTTGATTTGTGGTTATGGTAGGAGGAATATGCCAAAGGAGGCTGTTTTCTTTGCCCAATTTGGTGACTATGGTGTGTGCCATTTCAGCTTGTGCAAAGTGAAGGATGTTGCGTTGTGTGAGAGGGTGTGTGTTTGCATTTGGGAGTCTGGACTGAAAAGTAATATGGTTACGGTGAATTCACTTGTTGGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

107

Amino Acids

12.08

Weight (kDa)

4.72

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	304
AgsI	TTSAA	1 cut(s)	104
AhlI	ACTAGT	1 cut(s)	125
AluBI	AGCT	1 cut(s)	216
AluI	AGCT	1 cut(s)	216
ApoI	RAATTY	1 cut(s)	304
AsuHPI	GGTGA	2 cut(s)	203, 313
BcuI	ACTAGT	1 cut(s)	125
BfaI	CTAG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	91
Bst4CI	ACNGT	2 cut(s)	115, 301
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	238
CviJI	RGCY	2 cut(s)	170, 216
CviKI_1	RGCY	2 cut(s)	170, 216
DdeI	CTNAG	1 cut(s)	78
EcoRI	GAATTC	1 cut(s)	304
FaiI	YATR	9 cut(s)	51, 75, 111, 144, 158, 198, 293, 320, 322
FaqI	GGGAC	1 cut(s)	77
FokI	GGATG	1 cut(s)	245
FspBI	CTAG	1 cut(s)	126
HinfI	GANTC	3 cut(s)	32, 40, 272
HphI	GGTGA	2 cut(s)	203, 313
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	1 cut(s)	276
Hpy8I	GTNNAC	1 cut(s)	123
HpyAV	CCTTC	2 cut(s)	76, 223
HpyCH4III	ACNGT	2 cut(s)	115, 301
HpyCH4V	TGCA	3 cut(s)	53, 222, 264
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	1 cut(s)	78
LpnPI	CCDG	1 cut(s)	261
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	2 cut(s)	191, 295
MboII	GAAGA	1 cut(s)	26
MluCI	AATT	2 cut(s)	185, 304
MlyI	GAGTC	1 cut(s)	281
MnlI	CCTC	4 cut(s)	4, 144, 160, 243
MslI	CAYNNNNRTG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	32, 40
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	48
SchI	GAGTC	1 cut(s)	281
SetI	ASST	2 cut(s)	87, 218
SgeI	CNNG	6 cut(s)	79, 113, 132, 138, 229, 288
SmiMI	CAYNNNNRTG	1 cut(s)	48
SpeI	ACTAGT	1 cut(s)	125
Sse9I	AATT	2 cut(s)	185, 304
SspMI	CTAG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	115, 301
TasI	AATT	2 cut(s)	185, 304
TfiI	GAWTC	2 cut(s)	32, 40
TseFI	GTSAC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	2 cut(s)	32, 108
XapI	RAATTY	1 cut(s)	304
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.