Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001942.1

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

214177 .. 214482

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001942.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgggtttggaggaagatgtgttcatagagaattttttgattcatttctgtgcagaatgtggggacttggattacgcccagaaggtgtgtgatgaaatgcttgagagaaacactgtgtcgtggactagtttgatttgtggttatggttggaggattatgccaaaggaggctgtttctttgtttttcgagatggtggctaccgggattaaacccaattcggtgaatctggtgcgtgtcatttctgcttgtgcaaagttgaaggatgttgcgttgagtgagtgtgtgtacttaaattggggagtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

101

Amino Acids

11.39

Weight (kDa)

4.58

Isoelectric Point (pI)

30.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	31
AfaI	GTAC	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	259
AhlI	ACTAGT	1 cut(s)	125
AloI	GAACNNNNNNTCC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	31
AsuC2I	CCSGG	1 cut(s)	202
AsuHPI	GGTGA	1 cut(s)	232
BccI	CCATC	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	202
BcuI	ACTAGT	1 cut(s)	125
BfaI	CTAG	1 cut(s)	126
Bme1390I	CCNGG	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	268
BsgI	GTGCAG	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	286
CviJI	RGCY	2 cut(s)	170, 197
CviKI_1	RGCY	2 cut(s)	170, 197
CviQI	GTAC	1 cut(s)	286
FaiI	YATR	3 cut(s)	26, 144, 158
FaqI	GGGAC	1 cut(s)	77
FokI	GGATG	1 cut(s)	275
FspBI	CTAG	1 cut(s)	126
HapII	CCGG	1 cut(s)	201
HinfI	GANTC	3 cut(s)	40, 223, 300
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	123, 286
Hpy188I	TCNGA	1 cut(s)	305
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	2 cut(s)	123, 286
HpyAV	CCTTC	2 cut(s)	76, 253
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	53, 251
LpnPI	CCDG	3 cut(s)	92, 212, 214
MaeI	CTAG	1 cut(s)	126
MboII	GAAGA	1 cut(s)	26
MluCI	AATT	3 cut(s)	31, 214, 292
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	3 cut(s)	4, 144, 160
MseI	TTAA	2 cut(s)	207, 290
MslI	CAYNNNNRTG	1 cut(s)	48
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	202
NciI	CCSGG	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	40, 223
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	207, 290
ScrFI	CCNGG	1 cut(s)	202
SetI	ASST	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SpeI	ACTAGT	1 cut(s)	125
Sse9I	AATT	3 cut(s)	31, 214, 292
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	186
TasI	AATT	3 cut(s)	31, 214, 292
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	2 cut(s)	40, 223
Tru1I	TTAA	2 cut(s)	207, 290
Tru9I	TTAA	2 cut(s)	207, 290
TscAI	CASTG	1 cut(s)	118
TspDTI	ATGAA	3 cut(s)	13, 32, 108
TspRI	CASTG	1 cut(s)	118
XapI	RAATTY	1 cut(s)	31
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.