Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002939.1

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 862

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002939.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atggccgcaatgcttcagctgagtcctctggtctcagccaccccaagtttcatagctcccactaaccaaaacgaacccaaagccatagccaaggacacttccccaactgggtcactaagaaactgcaaaaccataaaccaagtgaagcaacttcactgtcacatcactaagacaggcttcagtcacacaccctctaatgtcaccaagctaattagcgcatgcgccgagatgggcaccttcgaaagcttagattatgcccggaaagcctttaacttgtttcttgaagaagaagaaactaagggtgtattgttcatgtataattctctcataaggggttactctagtgctgggctttgtgacgaggctattgggctttatgttcagatggtgcttcagggtgttttgccggataagttcacatttccgtttgcactgagcgcgtgctcaaagattgtggctttctgtgaaggtgttcagctgcacgggtcgcttgtgaagatgggtttggaggaagatgtgtttattgggaattctttgattcatttctatgcagaatgtgggcacttggattatgcccagaaggtgtttgatgaaatgcttgagagaaacatcgtgtcgtggactagtttgatttgtggctatggtcggaggaatatgccaaagcaggctgtttctttgtttttcgagatggtggctgccggtgttaagcccaattcggtgactatggtgtgtgtcatttctgcttgtgcaaagttgaaggatgttgcgttgagtgagagagtgtgcgcttacattggggagtctggactcaagactaatatgcttatggtgaattcacttgttgatatgtatatgaaatgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

287

Amino Acids

31.5

Weight (kDa)

6.59

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	233
AccII	CGCG	1 cut(s)	440
AciI	CCGC	1 cut(s)	6
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	529, 832
AcuI	CTGAAG	2 cut(s)	163, 377
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	2 cut(s)	284, 757
AhlI	ACTAGT	1 cut(s)	623
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
AluBI	AGCT	5 cut(s)	19, 56, 208, 246, 478
AluI	AGCT	5 cut(s)	19, 56, 208, 246, 478
Alw21I	GWGCWC	1 cut(s)	446
Alw26I	GTCTC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	478, 695
ApoI	RAATTY	2 cut(s)	529, 832
Asp700I	GAANNNNTTC	1 cut(s)	471
AspLEI	GCGC	4 cut(s)	218, 224, 440, 788
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	3 cut(s)	193, 730, 841
AsuII	TTCGAA	1 cut(s)	240
BaeGI	GKGCMC	2 cut(s)	236, 564
BanI	GGYRCC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	446
BbvI	GCAGC	2 cut(s)	465, 682
BccI	CCATC	4 cut(s)	223, 379, 493, 682
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	37
BcuI	ACTAGT	1 cut(s)	623
BfaI	CTAG	2 cut(s)	342, 624
BisI	GCNGC	3 cut(s)	6, 479, 696
BlsI	GCNGC	3 cut(s)	7, 480, 697
Bme1390I	CCNGG	1 cut(s)	259
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	259
BmrI	ACTGGG	1 cut(s)	117
BmuI	ACTGGG	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	240
BpuEI	CTTGAG	2 cut(s)	620, 794
BpuMI	CCSGG	1 cut(s)	259
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse118I	RCCGGY	1 cut(s)	698
Bse1I	ACTGG	1 cut(s)	112
Bse3DI	GCAATG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	766
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	3 cut(s)	11, 48, 425
BseNI	ACTGG	1 cut(s)	112
BseSI	GKGCMC	2 cut(s)	236, 564
BseXI	GCAGC	2 cut(s)	465, 682
BseYI	CCCAGC	1 cut(s)	347
BsgI	GTGCAG	1 cut(s)	464
Bsh1236I	CGCG	1 cut(s)	440
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	446
BsiSI	CCGG	3 cut(s)	259, 407, 699
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	37
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1286I	GDGCHC	3 cut(s)	236, 446, 564
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	12, 47, 426
BspFNI	CGCG	1 cut(s)	440
BspLI	GGNNCC	1 cut(s)	235
BspT104I	TTCGAA	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	698
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	698
BssECI	CCNNGG	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	240
BstC8I	GCNNGC	3 cut(s)	220, 442, 666
BstDEI	CTNAG	7 cut(s)	20, 34, 116, 168, 247, 297, 434
BstF5I	GGATG	1 cut(s)	766
BstFNI	CGCG	1 cut(s)	440
BstHHI	GCGC	4 cut(s)	218, 224, 440, 788
BstMAI	GTCTC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 437, 487
BstNSI	RCATGY	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	257
BstSLI	GKGCMC	2 cut(s)	236, 564
BstUI	CGCG	1 cut(s)	440
BstV1I	GCAGC	2 cut(s)	465, 682
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	766
BtsIMutI	CAGTG	2 cut(s)	154, 431
Cac8I	GCNNGC	3 cut(s)	220, 442, 666
CfoI	GCGC	4 cut(s)	218, 224, 440, 788
Cfr10I	RCCGGY	1 cut(s)	698
CspCI	CAANNNNNGTGG	2 cut(s)	435, 470
CviAII	CATG	2 cut(s)	219, 313
DdeI	CTNAG	7 cut(s)	20, 34, 116, 168, 247, 297, 434
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	37
Eco57I	CTGAAG	2 cut(s)	163, 377
EcoRI	GAATTC	2 cut(s)	529, 832
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	222, 316
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	2 cut(s)	218, 312
Fnu4HI	GCNGC	3 cut(s)	6, 479, 696
FokI	GGATG	1 cut(s)	773
Fsp4HI	GCNGC	3 cut(s)	6, 479, 696
FspBI	CTAG	2 cut(s)	342, 624
GlaI	GCGC	4 cut(s)	217, 223, 439, 787
GluI	GCNGC	3 cut(s)	6, 479, 696
GsaI	CCCAGC	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	259, 407, 699
HhaI	GCGC	4 cut(s)	218, 224, 440, 788
Hin1II	CATG	2 cut(s)	222, 316
Hin6I	GCGC	4 cut(s)	216, 222, 438, 786
HinP1I	GCGC	4 cut(s)	216, 222, 438, 786
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	4 cut(s)	22, 538, 800, 807
HpaII	CCGG	3 cut(s)	259, 407, 699
HphI	GGTGA	3 cut(s)	193, 730, 841
Hpy166II	GTNNAC	2 cut(s)	417, 621
Hpy188I	TCNGA	2 cut(s)	384, 648
Hpy188III	TCNNGA	4 cut(s)	281, 685, 804, 811
Hpy8I	GTNNAC	2 cut(s)	417, 621
HpyAV	CCTTC	4 cut(s)	247, 461, 574, 751
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	5 cut(s)	126, 431, 481, 551, 749
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 437, 487
HpyF3I	CTNAG	7 cut(s)	20, 34, 116, 168, 247, 297, 434
Hsp92II	CATG	2 cut(s)	222, 316
HspAI	GCGC	4 cut(s)	216, 222, 438, 786
LmnI	GCTCC	1 cut(s)	61
Lsp1109I	GCAGC	2 cut(s)	465, 682
MaeI	CTAG	2 cut(s)	342, 624
MaeIII	GTNAC	7 cut(s)	111, 158, 182, 199, 335, 356, 718
MboII	GAAGA	5 cut(s)	296, 299, 302, 508, 524
MhlI	GDGCHC	3 cut(s)	236, 446, 564
MluCI	AATT	5 cut(s)	210, 319, 529, 712, 832
MlyI	GAGTC	3 cut(s)	31, 801, 809
MmeI	TCCRAC	1 cut(s)	626
MnlI	CCTC	5 cut(s)	36, 202, 355, 502, 642
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	2 cut(s)	270, 705
MslI	CAYNNNNRTG	1 cut(s)	546
MspA1I	CMGCKG	2 cut(s)	19, 478
MspI	CCGG	3 cut(s)	259, 407, 699
MspR9I	CCNGG	1 cut(s)	259
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	3 cut(s)	263, 437, 487
NciI	CCSGG	1 cut(s)	259
NlaIII	CATG	2 cut(s)	222, 316
NlaIV	GGNNCC	1 cut(s)	235
NmeAIII	GCCGAG	1 cut(s)	250
NmuCI	GTSAC	6 cut(s)	111, 158, 182, 199, 356, 718
NspI	RCATGY	1 cut(s)	222
NspV	TTCGAA	1 cut(s)	240
PaeI	GCATGC	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	538
PkrI	GCNGC	3 cut(s)	7, 480, 697
PleI	GAGTC	3 cut(s)	30, 801, 808
PpsI	GAGTC	3 cut(s)	30, 801, 808
PspFI	CCCAGC	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	235
PvuII	CAGCTG	2 cut(s)	19, 478
RseI	CAYNNNNRTG	1 cut(s)	546
SaqAI	TTAA	2 cut(s)	270, 705
SatI	GCNGC	3 cut(s)	6, 479, 696
SchI	GAGTC	3 cut(s)	31, 801, 809
ScrFI	CCNGG	1 cut(s)	259
SduI	GDGCHC	3 cut(s)	236, 446, 564
SetI	ASST	8 cut(s)	21, 58, 210, 239, 248, 472, 480, 585
SfuI	TTCGAA	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	2 cut(s)	599, 809
SmoI	CTYRAG	2 cut(s)	599, 809
SpeI	ACTAGT	1 cut(s)	623
SphI	GCATGC	1 cut(s)	222
Sse9I	AATT	5 cut(s)	210, 319, 529, 712, 832
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	2 cut(s)	342, 624
StyD4I	CCNGG	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	2 cut(s)	240, 684
TasI	AATT	5 cut(s)	210, 319, 529, 712, 832
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	538
Tru1I	TTAA	2 cut(s)	270, 705
Tru9I	TTAA	2 cut(s)	270, 705
TscAI	CASTG	2 cut(s)	161, 438
TseFI	GTSAC	6 cut(s)	111, 158, 182, 199, 356, 718
TseI	GCWGC	2 cut(s)	478, 695
Tsp45I	GTSAC	6 cut(s)	111, 158, 182, 199, 356, 718
TspDTI	ATGAA	4 cut(s)	40, 301, 530, 606
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	2 cut(s)	161, 438
XapI	RAATTY	2 cut(s)	529, 832
XceI	RCATGY	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	2 cut(s)	342, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.