Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006571.1

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

36801 .. 39401

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006571.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgggtttggaggaacacgtgtctattgggaattggatcgtgcccggaaggtgtttgattaaatgcttgagagaaatactgtgtcgtggactagttcaatttgggcttatggtgactctggtgtgtgtcatttctgcttgtgcaaagttgaaggatgttgcgttgagtgagagggtgtgtgcttacattggggagtctggactgaagagtaatgggcttatggtgaattcacttgttgatatgtttatgaaatttggggatactagtactgcaaagcgcctttttgatgaatgtgtggataaaaactttggtactttacaatatgtgcgccatggactggctggtgaagcagtttcggactcccggtttgatctcgtattgccgggtagtgaggttctgaagtggttccattgttcgaaggaagttgttgctgatgaaaacaggccgtccagtacatctgcgttttcttttgaaatccctagcaaattgaaatgggagaatataggagtggctctttgttctgtttctggtttttcagttgaggaaactcttcgtgctgattttttcatcagtgggattgtaatagcggctgatgacactgcaatgaggttttgttccaaaactggattaaatgttccagactccaggcattcatggtgtttgtgtctttcgtctggatgcaacgacgattccttcaaaatgacatgtggttggcgaatgtcggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

242

Amino Acids

26.6

Weight (kDa)

5.65

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	337
AciI	CCGC	1 cut(s)	587
AclWI	GGATC	1 cut(s)	44
AcsI	RAATTY	2 cut(s)	226, 251
AcuI	CTGAAG	2 cut(s)	224, 419
AcvI	CACGTG	1 cut(s)	19
AfaI	GTAC	3 cut(s)	268, 313, 454
AfiI	CCNNNNNNNGG	1 cut(s)	337
AflIII	ACRYGT	3 cut(s)	16, 18, 704
AgsI	TTSAA	5 cut(s)	98, 151, 473, 490, 697
AhlI	ACTAGT	2 cut(s)	91, 263
AjnI	CCWGG	1 cut(s)	644
AloI	GAACNNNNNNTCC	2 cut(s)	618, 650
AlwI	GGATC	1 cut(s)	44
AoxI	GGCC	1 cut(s)	443
ApoI	RAATTY	2 cut(s)	226, 251
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
Asp700I	GAANNNNTTC	2 cut(s)	404, 549
AspLEI	GCGC	2 cut(s)	279, 330
AsuC2I	CCSGG	3 cut(s)	45, 364, 384
AsuHPI	GGTGA	3 cut(s)	124, 235, 356
AsuII	TTCGAA	1 cut(s)	416
BaeGI	GKGCMC	1 cut(s)	45
BbrPI	CACGTG	1 cut(s)	19
BceAI	ACGGC	1 cut(s)	430
BciT130I	CCWGG	1 cut(s)	646
BciVI	GTATCC	1 cut(s)	253
BcnI	CCSGG	3 cut(s)	45, 364, 384
BcuI	ACTAGT	2 cut(s)	91, 263
BfaI	CTAG	3 cut(s)	92, 264, 480
BfoI	RGCGCY	1 cut(s)	280
BfuI	GTATCC	1 cut(s)	253
BisI	GCNGC	1 cut(s)	588
BlsI	GCNGC	1 cut(s)	589
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	4 cut(s)	45, 364, 384, 646
BmiI	GGNNCC	1 cut(s)	407
BmrFI	CCNGG	4 cut(s)	45, 364, 384, 646
BmsI	GCATC	1 cut(s)	668
BpmI	CTGGAG	1 cut(s)	628
Bpu14I	TTCGAA	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	88
BpuMI	CCSGG	3 cut(s)	45, 364, 384
BsaAI	YACGTR	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse1I	ACTGG	3 cut(s)	342, 450, 628
Bse3DI	GCAATG	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	646
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	2 cut(s)	160, 683
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMI	GCAATG	1 cut(s)	609
BseNI	ACTGG	3 cut(s)	342, 450, 628
BseSI	GKGCMC	1 cut(s)	45
BshFI	GGCC	1 cut(s)	445
BsiSI	CCGG	3 cut(s)	45, 364, 383
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	1 cut(s)	445
Bsp119I	TTCGAA	1 cut(s)	416
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	36, 370
Bsp19I	CCATGG	1 cut(s)	331
BspACI	CCGC	1 cut(s)	587
BspANI	GGCC	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	407
BspPI	GGATC	1 cut(s)	44
BspT104I	TTCGAA	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	609
BsrI	ACTGG	3 cut(s)	342, 450, 628
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	2 cut(s)	36, 370
BssT1I	CCWWGG	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	646
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	2 cut(s)	200, 555
BstBAI	YACGTR	1 cut(s)	19
BstBI	TTCGAA	1 cut(s)	416
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	2 cut(s)	160, 683
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	2 cut(s)	279, 330
BstKTI	GATC	2 cut(s)	39, 373
BstMBI	GATC	2 cut(s)	36, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	1 cut(s)	646
BstNSI	RCATGY	1 cut(s)	708
BstSCI	CCNGG	4 cut(s)	43, 362, 382, 644
BstSLI	GKGCMC	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	445
BtgI	CCRYGG	1 cut(s)	331
BtsCI	GGATG	2 cut(s)	160, 683
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	2 cut(s)	577, 597
CfoI	GCGC	2 cut(s)	279, 330
Csp6I	GTAC	3 cut(s)	267, 312, 453
CviAII	CATG	3 cut(s)	332, 654, 705
CviJI	RGCY	6 cut(s)	106, 217, 341, 445, 512, 590
CviKI_1	RGCY	6 cut(s)	106, 217, 341, 445, 512, 590
CviQI	GTAC	3 cut(s)	267, 312, 453
DpnI	GATC	2 cut(s)	38, 372
DpnII	GATC	2 cut(s)	36, 370
Eam1104I	CTCTTC	2 cut(s)	200, 555
EarI	CTCTTC	2 cut(s)	200, 555
Eco130I	CCWWGG	1 cut(s)	331
Eco57I	CTGAAG	2 cut(s)	224, 419
Eco72I	CACGTG	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	644
EcoT14I	CCWWGG	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	3 cut(s)	335, 657, 708
FaiI	YATR	9 cut(s)	110, 221, 242, 248, 324, 333, 503, 655, 706
FatI	CATG	3 cut(s)	331, 653, 704
Fnu4HI	GCNGC	1 cut(s)	588
FokI	GGATG	2 cut(s)	167, 690
Fsp4HI	GCNGC	1 cut(s)	588
FspBI	CTAG	3 cut(s)	92, 264, 480
GlaI	GCGC	2 cut(s)	278, 329
GluI	GCNGC	1 cut(s)	588
GsuI	CTGGAG	1 cut(s)	628
HaeII	RGCGCY	1 cut(s)	280
HaeIII	GGCC	1 cut(s)	445
HapII	CCGG	3 cut(s)	45, 364, 383
HhaI	GCGC	2 cut(s)	279, 330
Hin1II	CATG	3 cut(s)	335, 657, 708
Hin6I	GCGC	2 cut(s)	277, 328
HinP1I	GCGC	2 cut(s)	277, 328
HinfI	GANTC	5 cut(s)	115, 194, 359, 641, 689
HpaII	CCGG	3 cut(s)	45, 364, 383
HphI	GGTGA	3 cut(s)	124, 235, 356
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	3 cut(s)	358, 399, 724
Hpy188III	TCNNGA	3 cut(s)	198, 638, 675
Hpy8I	GTNNAC	1 cut(s)	89
Hpy99I	CGWCG	1 cut(s)	689
HpyAV	CCTTC	4 cut(s)	42, 145, 412, 703
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	4 cut(s)	143, 272, 602, 681
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	3 cut(s)	335, 657, 708
HspAI	GCGC	2 cut(s)	277, 328
Kzo9I	GATC	2 cut(s)	36, 370
LweI	GCATC	1 cut(s)	668
MaeI	CTAG	3 cut(s)	92, 264, 480
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	2 cut(s)	38, 372
MboI	GATC	2 cut(s)	36, 370
MboII	GAAGA	2 cut(s)	217, 542
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	5 cut(s)	31, 98, 226, 251, 485
MlyI	GAGTC	4 cut(s)	109, 203, 353, 635
MmeI	TCCRAC	1 cut(s)	702
MnlI	CCTC	5 cut(s)	4, 165, 385, 535, 600
MroXI	GAANNNNTTC	2 cut(s)	404, 549
MseI	TTAA	2 cut(s)	60, 629
MslI	CAYNNNNRTG	1 cut(s)	602
MspI	CCGG	3 cut(s)	45, 364, 383
MspR9I	CCNGG	4 cut(s)	45, 364, 384, 646
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	1 cut(s)	646
MwoI	GCNNNNNNNGC	1 cut(s)	347
NciI	CCSGG	3 cut(s)	45, 364, 384
NcoI	CCATGG	1 cut(s)	331
NdeII	GATC	2 cut(s)	36, 370
NlaIII	CATG	3 cut(s)	335, 657, 708
NlaIV	GGNNCC	1 cut(s)	407
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	708
NspV	TTCGAA	1 cut(s)	416
PciI	ACATGT	1 cut(s)	704
PctI	GAATGC	1 cut(s)	649
PdmI	GAANNNNTTC	2 cut(s)	404, 549
PfeI	GAWTC	1 cut(s)	689
PflMI	CCANNNNNTGG	1 cut(s)	337
PkrI	GCNGC	1 cut(s)	589
PleI	GAGTC	4 cut(s)	109, 202, 353, 635
PmaCI	CACGTG	1 cut(s)	19
PmlI	CACGTG	1 cut(s)	19
PpsI	GAGTC	4 cut(s)	109, 202, 353, 635
Ppu21I	YACGTR	1 cut(s)	19
PscI	ACATGT	1 cut(s)	704
Psp6I	CCWGG	1 cut(s)	644
PspCI	CACGTG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	644
PspN4I	GGNNCC	1 cut(s)	407
RsaI	GTAC	3 cut(s)	268, 313, 454
RsaNI	GTAC	3 cut(s)	267, 312, 453
RseI	CAYNNNNRTG	1 cut(s)	602
SaqAI	TTAA	2 cut(s)	60, 629
SatI	GCNGC	1 cut(s)	588
Sau3AI	GATC	2 cut(s)	36, 370
ScaI	AGTACT	1 cut(s)	268
SchI	GAGTC	4 cut(s)	109, 203, 353, 635
ScrFI	CCNGG	4 cut(s)	45, 364, 384, 646
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	4 cut(s)	21, 53, 396, 611
SfaNI	GCATC	1 cut(s)	668
SfuI	TTCGAA	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
SpeI	ACTAGT	2 cut(s)	91, 263
Sse9I	AATT	5 cut(s)	31, 98, 226, 251, 485
SsiI	CCGC	1 cut(s)	587
SspMI	CTAG	3 cut(s)	92, 264, 480
StyD4I	CCNGG	4 cut(s)	43, 362, 382, 644
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	81
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	416
TasI	AATT	5 cut(s)	31, 98, 226, 251, 485
TatI	WGTACW	2 cut(s)	266, 452
TauI	GCSGC	1 cut(s)	590
TfiI	GAWTC	1 cut(s)	689
Tru1I	TTAA	2 cut(s)	60, 629
Tru9I	TTAA	2 cut(s)	60, 629
TscAI	CASTG	2 cut(s)	577, 604
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	5 cut(s)	263, 303, 450, 556, 642
TspRI	CASTG	2 cut(s)	577, 604
Van91I	CCANNNNNTGG	1 cut(s)	337
XapI	RAATTY	2 cut(s)	226, 251
XceI	RCATGY	1 cut(s)	708
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XmnI	GAANNNNTTC	2 cut(s)	404, 549
XspI	CTAG	3 cut(s)	92, 264, 480
ZrmI	AGTACT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.