Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

2125481 .. 2126069

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36002

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGGTTTGGAGGAAGATGTGTTTATTGGGAATTCTTTGATTCGTATCTATGCAGAATGTGGGGACTTGGATTATGCCTGGAAGGTGTTTGATGAAATTCTTGAGAGAAATACTGTGTTGTGGACTAGTATGATTTGCGGTTATGGTTGGAGGGATATGCCAAAGGAGGCTTTTTTCTTGTTTTTCGAGATGGTGGCTGCAGGGATTAAACCAATTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

73

Amino Acids

8.47

Weight (kDa)

4.31

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	36 - 71	2.9e-06	PPR repeat family
PPR	PF01535	39 - 69	3.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	138
AcsI	RAATTY	2 cut(s)	31, 96
AhlI	ACTAGT	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	2 cut(s)	31, 96
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	79
BcuI	ACTAGT	1 cut(s)	125
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	1 cut(s)	198
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	79
BpuEI	CTTGAG	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	44
Bse8I	GATNNNNATC	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	79
BseJI	GATNNNNATC	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	184
BslFI	GGGAC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	77
BspACI	CCGC	1 cut(s)	138
BspMAI	CTGCAG	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	1 cut(s)	115
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	77
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	184
CviJI	RGCY	2 cut(s)	170, 197
CviKI_1	RGCY	2 cut(s)	170, 197
EcoRI	GAATTC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	77
FaiI	YATR	5 cut(s)	51, 75, 131, 144, 158
FaqI	GGGAC	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	1 cut(s)	198
HinfI	GANTC	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188III	TCNNGA	2 cut(s)	101, 187
Hpy8I	GTNNAC	1 cut(s)	123
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	53, 200
LpnPI	CCDG	3 cut(s)	64, 91, 186
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	126
MboII	GAAGA	1 cut(s)	26
MluCI	AATT	3 cut(s)	31, 96, 213
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	3 cut(s)	4, 144, 160
MseI	TTAA	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PstI	CTGCAG	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	79
SetI	ASST	1 cut(s)	87
SfcI	CTRYAG	1 cut(s)	198
SgeI	CNNG	8 cut(s)	79, 90, 91, 113, 138, 190, 199, 213
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SpeI	ACTAGT	1 cut(s)	125
Sse9I	AATT	3 cut(s)	31, 96, 213
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	186
TasI	AATT	3 cut(s)	31, 96, 213
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	108
TspGWI	ACGGA	1 cut(s)	207
XapI	RAATTY	2 cut(s)	31, 96
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.