Rroxscaffold_2G00119690

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000589
Physical Location & Seq
Forward (+)
51633073 .. 51635398
2326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119690.1

Sequence Viewer

Length: 504 bp
ATGAAGAACTCGGTGTCGGATTGCAGTTTTTACATTAACAGTGAAGAAGAAGATGATGTGGAGAAGGACAAGAAAAGCATAGAAGATGGGAATGATTTTGATTCTTCGCGCCATTTCACTGACTTTCTTTGGGCTCACATCTACGAAAGCTTCTCAACAGAAAAGAGAAGAAGAGATACCTGCGCTGTCTGTGCGGAGACAGTTAAATGGGTCGCATATGGGCCCTGTGGCCATCGAGAGGTCTGCTCTACCTGCATTTTTCACCTCTGTTTCATCTATGGATCTGCCTGCGCAAGAGTGAATCTAAGGTCATCTTTGTCACCAAGGTTAGGTATCAGTTGTAATCTAAGGCTTGCCATGCAACTCAATTTGTGTCCAAGCATGGAACTATCTACTACAAGACAAGCAATACATTCAGGAGCCGACAGCTGTGGAGAAATGCAGCGAGGTGTCAAAGCAATTCTAACATTCTTTTTATTGAAGTGCTTCAGGAGTGAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.91

Weight (kDa)

6.2

Isoelectric Point (pI)

56.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000589)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22690 AT3G22690 AT3G22690
fragaria_vesca FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica Prupe.1G018800_v2.0.a1
pyrus_communis pycom07g16490
rosa_chinensis RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 292
Acc36I ACCTGC 2 cut(s) 188, 260
AccII CGCG 1 cut(s) 109
AciI CCGC 1 cut(s) 194
AclWI GGATC 1 cut(s) 289
AcoI YGGCCR 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 472
AfiI CCNNNNNNNGG 2 cut(s) 238, 329
AgsI TTSAA 1 cut(s) 481
AluBI AGCT 2 cut(s) 150, 429
AluI AGCT 2 cut(s) 150, 429
Alw26I GTCTC 2 cut(s) 191, 491
AlwI GGATC 1 cut(s) 289
AoxI GGCC 2 cut(s) 221, 229
ApaI GGGCCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 442
Asp700I GAANNNNTTC 1 cut(s) 485
AspLEI GCGC 3 cut(s) 111, 185, 293
AspS9I GGNCC 2 cut(s) 221, 222
AsuHPI GGTGA 2 cut(s) 254, 312
BaeGI GKGCMC 1 cut(s) 225
BalI TGGCCA 1 cut(s) 231
BanII GRGCYC 2 cut(s) 136, 225
BarI GAAGNNNNNNTAC 2 cut(s) 160, 192
BbvI GCAGC 1 cut(s) 454
BccI CCATC 2 cut(s) 80, 240
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BcoDI GTCTC 2 cut(s) 191, 491
BfuAI ACCTGC 2 cut(s) 188, 260
BisI GCNGC 1 cut(s) 443
BlsI GCNGC 1 cut(s) 444
BmgT120I GGNCC 2 cut(s) 221, 222
BmiI GGNNCC 2 cut(s) 223, 421
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BsaJI CCNNGG 1 cut(s) 323
Bsc4I CCNNNNNNNGG 2 cut(s) 238, 329
BseDI CCNNGG 1 cut(s) 323
BseLI CCNNNNNNNGG 2 cut(s) 238, 329
BseSI GKGCMC 1 cut(s) 225
BseXI GCAGC 1 cut(s) 454
Bsh1236I CGCG 1 cut(s) 109
BshFI GGCC 2 cut(s) 223, 231
BslI CCNNNNNNNGG 2 cut(s) 238, 329
BsmAI GTCTC 2 cut(s) 191, 491
BsnI GGCC 2 cut(s) 223, 231
Bsp120I GGGCCC 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 136, 225
Bsp143I GATC 1 cut(s) 281
BspACI CCGC 1 cut(s) 194
BspANI GGCC 2 cut(s) 223, 231
BspFNI CGCG 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 223, 421
BspMI ACCTGC 2 cut(s) 188, 260
BspPI GGATC 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 323
BssMI GATC 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 323
Bst4CI ACNGT 2 cut(s) 41, 202
Bst6I CTCTTC 1 cut(s) 166
BstC8I GCNNGC 2 cut(s) 289, 354
BstDEI CTNAG 2 cut(s) 305, 347
BstFNI CGCG 1 cut(s) 109
BstHHI GCGC 3 cut(s) 111, 185, 293
BstKTI GATC 1 cut(s) 284
BstMAI GTCTC 2 cut(s) 191, 491
BstMBI GATC 1 cut(s) 281
BstMWI GCNNNNNNNGC 3 cut(s) 191, 252, 358
BstSLI GKGCMC 1 cut(s) 225
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 454
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BsuRI GGCC 2 cut(s) 223, 231
BtsIMutI CAGTG 2 cut(s) 46, 117
BveI ACCTGC 2 cut(s) 188, 260
Cac8I GCNNGC 2 cut(s) 289, 354
CfoI GCGC 3 cut(s) 111, 185, 293
Cfr13I GGNCC 2 cut(s) 221, 222
CviAII CATG 2 cut(s) 358, 382
CviJI RGCY 7 cut(s) 134, 150, 223, 231, 352, 422, 429
CviKI_1 RGCY 7 cut(s) 134, 150, 223, 231, 352, 422, 429
DdeI CTNAG 2 cut(s) 305, 347
DpnI GATC 1 cut(s) 283
DpnII GATC 1 cut(s) 281
EaeI YGGCCR 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 323
Eco24I GRGCYC 2 cut(s) 136, 225
Eco57I CTGAAG 1 cut(s) 472
EcoO109I RGGNCCY 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 323
EcoT38I GRGCYC 2 cut(s) 136, 225
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 2 cut(s) 361, 385
FaiI YATR 6 cut(s) 80, 217, 219, 279, 359, 383
FalI AAGNNNNNCTT 2 cut(s) 298, 330
FatI CATG 2 cut(s) 357, 381
FauNDI CATATG 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 443
FriOI GRGCYC 2 cut(s) 136, 225
Fsp4HI GCNGC 1 cut(s) 443
FspI TGCGCA 1 cut(s) 292
GlaI GCGC 3 cut(s) 110, 184, 292
GluI GCNGC 1 cut(s) 443
HaeIII GGCC 2 cut(s) 223, 231
HhaI GCGC 3 cut(s) 111, 185, 293
Hin1II CATG 2 cut(s) 361, 385
Hin6I GCGC 3 cut(s) 109, 183, 291
HinP1I GCGC 3 cut(s) 109, 183, 291
HindIII AAGCTT 1 cut(s) 148
HinfI GANTC 2 cut(s) 101, 301
HphI GGTGA 2 cut(s) 254, 312
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 3 cut(s) 236, 417, 490
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 2 cut(s) 41, 202
HpyCH4V TGCA 4 cut(s) 24, 255, 361, 442
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 252, 358
HpyF3I CTNAG 2 cut(s) 305, 347
Hsp92II CATG 2 cut(s) 361, 385
HspAI GCGC 3 cut(s) 109, 183, 291
Kzo9I GATC 1 cut(s) 281
LmnI GCTCC 1 cut(s) 419
LpnPI CCDG 6 cut(s) 193, 238, 265, 301, 402, 475
Lsp1109I GCAGC 1 cut(s) 454
MaeIII GTNAC 1 cut(s) 318
MalI GATC 1 cut(s) 283
MboI GATC 1 cut(s) 281
MboII GAAGA 8 cut(s) 16, 56, 59, 62, 95, 96, 180, 183
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 2 cut(s) 136, 225
MlsI TGGCCA 1 cut(s) 231
MluCI AATT 2 cut(s) 367, 459
MluNI TGGCCA 1 cut(s) 231
MnlI CCTC 3 cut(s) 232, 275, 440
Mox20I TGGCCA 1 cut(s) 231
MroXI GAANNNNTTC 1 cut(s) 485
MscI TGGCCA 1 cut(s) 231
MseI TTAA 2 cut(s) 36, 204
Msp20I TGGCCA 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 429
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 3 cut(s) 191, 252, 358
NdeI CATATG 1 cut(s) 217
NdeII GATC 1 cut(s) 281
NlaIII CATG 2 cut(s) 361, 385
NlaIV GGNNCC 2 cut(s) 223, 421
NmuCI GTSAC 1 cut(s) 318
NsbI TGCGCA 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 485
PfeI GAWTC 2 cut(s) 101, 301
PkrI GCNGC 1 cut(s) 444
PspN4I GGNNCC 2 cut(s) 223, 421
PspOMI GGGCCC 1 cut(s) 221
PspPI GGNCC 2 cut(s) 221, 222
PsuI RGATCY 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 429
SaqAI TTAA 2 cut(s) 36, 204
SatI GCNGC 1 cut(s) 443
Sau3AI GATC 1 cut(s) 281
Sau96I GGNCC 2 cut(s) 221, 222
SduI GDGCHC 2 cut(s) 136, 225
Sse9I AATT 2 cut(s) 367, 459
SsiI CCGC 1 cut(s) 194
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 2 cut(s) 41, 202
TaqI TCGA 1 cut(s) 235
TasI AATT 2 cut(s) 367, 459
TfiI GAWTC 2 cut(s) 101, 301
Tru1I TTAA 2 cut(s) 36, 204
Tru9I TTAA 2 cut(s) 36, 204
TscAI CASTG 2 cut(s) 46, 124
TseFI GTSAC 1 cut(s) 318
TseI GCWGC 1 cut(s) 442
Tsp45I GTSAC 1 cut(s) 318
TspDTI ATGAA 2 cut(s) 17, 262
TspRI CASTG 2 cut(s) 46, 124
XmnI GAANNNNTTC 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.