Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Forward (+)

63433419 .. 63433874

Gene Structure 456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010146

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCAGCCGGTCCATGGCATTTCTCCTCATAATTTTCGTTATCGTTGCATGGTTGATCTACTAGGCCGAGCAGGGCGCTTGGAAGAAGCTGTTGATCTGGTAAAGTGCATGCCAATGAAACCCAATGATGCCATTTGCGGTACTCTCTCGTCTGCATGTCGAACCCACGAAGACGTCGAAATGGCAGCATATGCAGCTGAATATATATCAAAGTTGACCACTCAGAGAACTGGTATTCATGTGCTTCAATCAAACATATATGCATCAGCTGGGAAATGGGCAGACATTGCAGAAGTGAGGCTACAATTGAAAGAGAAAGGGATTCAGAAGGTACCCGGATCCAGTTCCATTGAAATTAATGGAGTGATTGATGAGTTAATCTCCGGTGAAGAGCCACATTGCAGTGATGTTGCAAGAAATAAACAGCAGATTCAGAGATACTGCTCACGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

152

Amino Acids

16.73

Weight (kDa)

6.95

Isoelectric Point (pI)

50.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	56 - 118	2.1e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	177
Acc65I	GGTACC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	331
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	2 cut(s)	333, 346
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	2 cut(s)	142, 333
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	3 cut(s)	248, 310, 353
AluBI	AGCT	3 cut(s)	89, 197, 269
AluI	AGCT	3 cut(s)	89, 197, 269
AlwI	GGATC	2 cut(s)	333, 346
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	3 cut(s)	4, 185, 194
AseI	ATTAAT	1 cut(s)	357
Asp718I	GGTACC	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	10
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	10
BamHI	GGATCC	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	331
BarI	GAAGNNNNNNTAC	2 cut(s)	285, 317
BbsI	GAAGAC	1 cut(s)	177
BbvI	GCAGC	3 cut(s)	16, 197, 206
BcnI	CCSGG	1 cut(s)	336
BfaI	CTAG	1 cut(s)	62
BfoI	RGCGCY	1 cut(s)	79
BisI	GCNGC	3 cut(s)	5, 186, 195
BlsI	GCNGC	3 cut(s)	6, 187, 196
Bme1390I	CCNGG	1 cut(s)	336
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	2 cut(s)	333, 340
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	2 cut(s)	118, 272
BpiI	GAAGAC	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
BpuMI	CCSGG	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	13
BsaWI	WCCGGW	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	2 cut(s)	235, 342
Bse3DI	GCAATG	2 cut(s)	285, 397
BseDI	CCNNGG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMI	GCAATG	2 cut(s)	285, 397
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	2 cut(s)	235, 342
BseRI	GAGGAG	1 cut(s)	15
BseXI	GCAGC	3 cut(s)	16, 197, 206
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	1 cut(s)	66
BshNI	GGYRCC	1 cut(s)	331
BsiSI	CCGG	3 cut(s)	8, 336, 384
BslI	CCNNNNNNNGG	1 cut(s)	14
BsnI	GGCC	1 cut(s)	66
Bsp143I	GATC	3 cut(s)	55, 94, 338
Bsp19I	CCATGG	1 cut(s)	13
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	333, 340
BspPI	GGATC	2 cut(s)	333, 346
BspQI	GCTCTTC	1 cut(s)	384
BspT107I	GGYRCC	1 cut(s)	331
BsrDI	GCAATG	2 cut(s)	285, 397
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	2 cut(s)	235, 342
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	3 cut(s)	55, 94, 338
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	384
BstACI	GRCGYC	1 cut(s)	174
BstAPI	GCANNNNNTGC	2 cut(s)	191, 287
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	222
BstDSI	CCRYGG	1 cut(s)	13
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	3 cut(s)	58, 97, 341
BstMBI	GATC	3 cut(s)	55, 94, 338
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 194, 287
BstNSI	RCATGY	2 cut(s)	112, 159
BstSCI	CCNGG	1 cut(s)	334
BstV1I	GCAGC	3 cut(s)	16, 197, 206
BstV2I	GAAGAC	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
BsuRI	GGCC	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	110
CfoI	GCGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	10
Csp6I	GTAC	2 cut(s)	141, 332
CviAII	CATG	5 cut(s)	14, 49, 109, 156, 239
CviJI	RGCY	7 cut(s)	7, 66, 89, 197, 269, 301, 394
CviKI_1	RGCY	7 cut(s)	7, 66, 89, 197, 269, 301, 394
CviQI	GTAC	2 cut(s)	141, 332
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	3 cut(s)	57, 96, 340
DpnII	GATC	3 cut(s)	55, 94, 338
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	13
EcoT22I	ATGCAT	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	5 cut(s)	17, 52, 112, 159, 242
FatI	CATG	5 cut(s)	13, 48, 108, 155, 238
FauNDI	CATATG	1 cut(s)	190
Fnu4HI	GCNGC	3 cut(s)	5, 186, 195
Fsp4HI	GCNGC	3 cut(s)	5, 186, 195
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	3 cut(s)	5, 186, 195
GsaI	CCCAGC	1 cut(s)	273
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	3 cut(s)	8, 336, 384
HhaI	GCGC	1 cut(s)	78
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	5 cut(s)	17, 52, 112, 159, 242
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	2 cut(s)	322, 430
HpaII	CCGG	3 cut(s)	8, 336, 384
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	3 cut(s)	225, 327, 435
Hpy188III	TCNNGA	1 cut(s)	453
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	322
HpyCH4IV	ACGT	2 cut(s)	174, 448
HpyCH4V	TGCA	9 cut(s)	4, 48, 108, 155, 194, 263, 290, 402, 413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 194, 287
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	2 cut(s)	174, 448
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	5 cut(s)	17, 52, 112, 159, 242
HspAI	GCGC	1 cut(s)	76
KpnI	GGTACC	1 cut(s)	335
Kzo9I	GATC	3 cut(s)	55, 94, 338
LguI	GCTCTTC	1 cut(s)	384
LpnPI	CCDG	8 cut(s)	21, 57, 83, 216, 255, 349, 355, 397
Lsp1109I	GCAGC	3 cut(s)	16, 197, 206
LweI	GCATC	2 cut(s)	118, 272
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	2 cut(s)	174, 448
MalI	GATC	3 cut(s)	57, 96, 340
MboI	GATC	3 cut(s)	55, 94, 338
MboII	GAAGA	3 cut(s)	95, 182, 401
MfeI	CAATTG	1 cut(s)	305
MflI	RGATCY	1 cut(s)	338
MluCI	AATT	3 cut(s)	31, 305, 354
MnlI	CCTC	2 cut(s)	36, 291
Mph1103I	ATGCAT	1 cut(s)	265
MseI	TTAA	2 cut(s)	357, 377
MslI	CAYNNNNRTG	2 cut(s)	113, 402
MspA1I	CMGCKG	2 cut(s)	197, 269
MspI	CCGG	3 cut(s)	8, 336, 384
MspR9I	CCNGG	1 cut(s)	336
MunI	CAATTG	1 cut(s)	305
MwoI	GCNNNNNNNGC	3 cut(s)	191, 194, 287
NciI	CCSGG	1 cut(s)	336
NcoI	CCATGG	1 cut(s)	13
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	3 cut(s)	55, 94, 338
NlaIII	CATG	5 cut(s)	17, 52, 112, 159, 242
NlaIV	GGNNCC	2 cut(s)	333, 340
NmeAIII	GCCGAG	1 cut(s)	92
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	2 cut(s)	112, 159
PaeI	GCATGC	1 cut(s)	112
PciSI	GCTCTTC	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	322, 430
PkrI	GCNGC	3 cut(s)	6, 187, 196
PshBI	ATTAAT	1 cut(s)	357
PspFI	CCCAGC	1 cut(s)	269
PspN4I	GGNNCC	2 cut(s)	333, 340
PspPI	GGNCC	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	338
PvuII	CAGCTG	2 cut(s)	197, 269
RsaI	GTAC	2 cut(s)	142, 333
RsaNI	GTAC	2 cut(s)	141, 332
RseI	CAYNNNNRTG	2 cut(s)	113, 402
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	357, 377
SatI	GCNGC	3 cut(s)	5, 186, 195
Sau3AI	GATC	3 cut(s)	55, 94, 338
Sau96I	GGNCC	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	6 cut(s)	91, 177, 199, 271, 333, 451
SfaNI	GCATC	2 cut(s)	118, 272
SinI	GGWCC	1 cut(s)	10
SmiMI	CAYNNNNRTG	2 cut(s)	113, 402
SphI	GCATGC	1 cut(s)	112
Sse9I	AATT	3 cut(s)	31, 305, 354
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	334
StyI	CCWWGG	1 cut(s)	13
TaiI	ACGT	2 cut(s)	177, 451
TaqI	TCGA	2 cut(s)	160, 177
TasI	AATT	3 cut(s)	31, 305, 354
TfiI	GAWTC	2 cut(s)	322, 430
Tru1I	TTAA	2 cut(s)	357, 377
Tru9I	TTAA	2 cut(s)	357, 377
TscAI	CASTG	1 cut(s)	409
TseI	GCWGC	3 cut(s)	4, 185, 194
TspDTI	ATGAA	2 cut(s)	131, 227
TspRI	CASTG	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	10
VspI	ATTAAT	1 cut(s)	357
XceI	RCATGY	2 cut(s)	112, 159
XspI	CTAG	1 cut(s)	62
ZraI	GACGTC	1 cut(s)	175
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.