Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

2399715 .. 2401099

Gene Structure 1385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36056

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGTTGATTTACTTGGCCGAGCAGGGGGCTTGGAAGAAGCTGTTGATCTGGTAAAGAGCATGCCAATGGAACCTAATGATGTCATTTGGGGCACTCTCTTGGCTGCTTGTCAAACCCACAAAAACGTCAAAATGGCAGCATATGCAGCTGAACAGGTATCTAAATTGACTACTCAGAGGGCTGGTATTCATGTGCTTGTCTCCAACATATATGCATCAGCTGGGAAATGGGCAGATATTGCAAAAGTGAGGCTACAACTAAAAGAGGCAGGGATGCAGAAGGTACCTGGATGCAGTTCCGTTGAAGTTAATGGAGTGATTCATGAGTTACCTTCGGTGGTGATACTGATACACACACAGAGAAGAGCCACATTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

126

Amino Acids

13.59

Weight (kDa)

8.64

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	40 - 102	2.9e-18	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	283
AccB1I	GGYRCC	1 cut(s)	283
AcoI	YGGCCR	1 cut(s)	16
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	3 cut(s)	41, 149, 221
AluI	AGCT	3 cut(s)	41, 149, 221
Alw26I	GTCTC	1 cut(s)	205
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	3 cut(s)	104, 137, 146
Asp718I	GGTACC	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	352
BaeGI	GKGCMC	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	283
BbvI	GCAGC	3 cut(s)	91, 149, 158
BciT130I	CCWGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	205
BisI	GCNGC	3 cut(s)	105, 138, 147
BlsI	GCNGC	3 cut(s)	106, 139, 148
Bme1390I	CCNGG	1 cut(s)	288
BmiI	GGNNCC	2 cut(s)	72, 285
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	3 cut(s)	224, 264, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	371
BseBI	CCWGG	1 cut(s)	288
BseGI	GGATG	2 cut(s)	279, 296
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	95
BseXI	GCAGC	3 cut(s)	91, 149, 158
BseYI	CCCAGC	1 cut(s)	221
BshFI	GGCC	1 cut(s)	18
BshNI	GGYRCC	1 cut(s)	283
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	46
BspANI	GGCC	1 cut(s)	18
BspCNI	CTCAG	1 cut(s)	187
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	72, 285
BspQI	GCTCTTC	1 cut(s)	358
BspT107I	GGYRCC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	371
BssMI	GATC	1 cut(s)	46
Bst2UI	CCWGG	1 cut(s)	288
Bst6I	CTCTTC	1 cut(s)	358
BstAPI	GCANNNNNTGC	2 cut(s)	143, 239
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	279, 296
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 146, 239
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	286
BstSLI	GKGCMC	1 cut(s)	95
BstV1I	GCAGC	3 cut(s)	91, 149, 158
BsuRI	GGCC	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	279, 296
Cac8I	GCNNGC	1 cut(s)	62
CciI	TCATGA	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	3 cut(s)	61, 191, 323
CviJI	RGCY	9 cut(s)	18, 30, 41, 104, 149, 182, 221, 253, 368
CviKI_1	RGCY	9 cut(s)	18, 30, 41, 104, 149, 182, 221, 253, 368
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	286
EcoT22I	ATGCAT	1 cut(s)	217
FaeI	CATG	3 cut(s)	64, 194, 326
FaiI	YATR	8 cut(s)	62, 142, 144, 192, 209, 211, 213, 324
FatI	CATG	3 cut(s)	60, 190, 322
FauNDI	CATATG	1 cut(s)	142
Fnu4HI	GCNGC	3 cut(s)	105, 138, 147
FokI	GGATG	2 cut(s)	286, 303
Fsp4HI	GCNGC	3 cut(s)	105, 138, 147
GluI	GCNGC	3 cut(s)	105, 138, 147
GsaI	CCCAGC	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	18
Hin1II	CATG	3 cut(s)	64, 194, 326
HinfI	GANTC	1 cut(s)	319
HphI	GGTGA	1 cut(s)	352
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	1 cut(s)	323
HpyAV	CCTTC	2 cut(s)	274, 342
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	6 cut(s)	146, 215, 242, 277, 294, 376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 146, 239
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	3 cut(s)	64, 194, 326
KpnI	GGTACC	1 cut(s)	287
Kzo9I	GATC	1 cut(s)	46
LguI	GCTCTTC	1 cut(s)	358
LpnPI	CCDG	8 cut(s)	9, 35, 140, 168, 207, 255, 273, 300
Lsp1109I	GCAGC	3 cut(s)	91, 149, 158
LweI	GCATC	3 cut(s)	224, 264, 281
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	327
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	2 cut(s)	47, 375
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	3 cut(s)	171, 243, 259
Mph1103I	ATGCAT	1 cut(s)	217
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	65
MspA1I	CMGCKG	2 cut(s)	149, 221
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	143, 146, 239
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	3 cut(s)	64, 194, 326
NlaIV	GGNNCC	2 cut(s)	72, 285
NmeAIII	GCCGAG	1 cut(s)	44
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	1 cut(s)	64
PaeI	GCATGC	1 cut(s)	64
PagI	TCATGA	1 cut(s)	322
PciSI	GCTCTTC	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	319
PkrI	GCNGC	3 cut(s)	106, 139, 148
Psp6I	CCWGG	1 cut(s)	286
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	2 cut(s)	72, 285
PvuII	CAGCTG	2 cut(s)	149, 221
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	358
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	3 cut(s)	105, 138, 147
Sau3AI	GATC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	9 cut(s)	43, 76, 129, 151, 159, 223, 285, 289, 334
SfaNI	GCATC	3 cut(s)	224, 264, 281
SmiMI	CAYNNNNRTG	1 cut(s)	65
SphI	GCATGC	1 cut(s)	64
Sse9I	AATT	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	286
TaiI	ACGT	1 cut(s)	129
TasI	AATT	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseI	GCWGC	3 cut(s)	104, 137, 146
TspDTI	ATGAA	2 cut(s)	179, 311
TspGWI	ACGGA	1 cut(s)	289
XceI	RCATGY	1 cut(s)	64
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.