Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011657.1

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Forward (+)

67311 .. 67969

Gene Structure 659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011657.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgtcaccgaacctcataagcacatgcgccaaaatgggcacctttgaaagcttacaccttgctcggaaaaccttcaacttgttccttgaagaagaagaagaagaaacaaagggtgtattgtttattgggaataatactttgattcatttctatgcagaatgcggggacttggattatgcccggaaggtgtttgatgaaatgcttgagagaaacactgtgtcgtggactagtttgatttgtggttatggttggaggaacatgccaaaggaggctgttttctttgtttttcgagatgctgaggagtttgtagacagtagacaggtaagtttgtcttttccatttgcagtggggactatagattttccattcggaaaggttacacaatctggccaagttggctacatgctgattgctgatctaactgaatttgagacgatagccaatgaggtagaagcaaaggcatatgctattctcctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

159

Amino Acids

18.07

Weight (kDa)

4.57

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccI	GTMKAC	2 cut(s)	309, 316
AciI	CCGC	1 cut(s)	162
AcoI	YGGCCR	1 cut(s)	388
AcsI	RAATTY	1 cut(s)	425
AgsI	TTSAA	3 cut(s)	47, 76, 89
AhlI	ACTAGT	1 cut(s)	227
AluBI	AGCT	1 cut(s)	51
AluI	AGCT	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	425
AoxI	GGCC	1 cut(s)	388
ApoI	RAATTY	1 cut(s)	425
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	29
AsuC2I	CCSGG	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	41
BalI	TGGCCA	1 cut(s)	390
BanI	GGYRCC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	425
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	2 cut(s)	228, 478
BfmI	CTRYAG	1 cut(s)	354
BglI	GCCNNNNNGGC	1 cut(s)	396
Bme1390I	CCNGG	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	283
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	288
BseRI	GAGGAG	2 cut(s)	314, 464
BseSI	GKGCMC	1 cut(s)	41
BshFI	GGCC	1 cut(s)	390
BshNI	GGYRCC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	2 cut(s)	179, 364
BsmAI	GTCTC	1 cut(s)	425
BsmBI	CGTCTC	1 cut(s)	425
BsmFI	GGGAC	2 cut(s)	179, 364
BsmI	GAATGC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	415
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	1 cut(s)	390
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	38
BssMI	GATC	1 cut(s)	415
Bst4CI	ACNGT	2 cut(s)	217, 314
BstDEI	CTNAG	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	1 cut(s)	418
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	1 cut(s)	415
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstNSI	RCATGY	3 cut(s)	27, 262, 406
BstSCI	CCNGG	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	354
BstSLI	GKGCMC	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	390
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	213, 351
CfoI	GCGC	1 cut(s)	29
CviAII	CATG	3 cut(s)	24, 259, 403
CviJI	RGCY	5 cut(s)	51, 272, 390, 399, 440
CviKI_1	RGCY	5 cut(s)	51, 272, 390, 399, 440
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
EaeI	YGGCCR	1 cut(s)	388
Esp3I	CGTCTC	1 cut(s)	425
FaeI	CATG	3 cut(s)	27, 262, 406
FalI	AAGNNNNNCTT	2 cut(s)	316, 348
FaqI	GGGAC	2 cut(s)	179, 364
FatI	CATG	3 cut(s)	23, 258, 402
FauI	CCCGC	1 cut(s)	155
FauNDI	CATATG	1 cut(s)	463
FblI	GTMKAC	2 cut(s)	309, 316
FspBI	CTAG	2 cut(s)	228, 478
GlaI	GCGC	1 cut(s)	28
HaeIII	GGCC	1 cut(s)	390
HapII	CCGG	1 cut(s)	181
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	3 cut(s)	27, 262, 406
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	1 cut(s)	142
HpaII	CCGG	1 cut(s)	181
Hpy166II	GTNNAC	3 cut(s)	225, 310, 317
Hpy188I	TCNGA	2 cut(s)	66, 371
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	3 cut(s)	225, 310, 317
HpyAV	CCTTC	2 cut(s)	82, 178
HpyCH4III	ACNGT	2 cut(s)	217, 314
HpyCH4V	TGCA	2 cut(s)	155, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
HpyF3I	CTNAG	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	27, 262, 406
HspAI	GCGC	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	415
LpnPI	CCDG	3 cut(s)	194, 305, 372
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	2 cut(s)	228, 478
MaeIII	GTNAC	2 cut(s)	3, 376
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	5 cut(s)	101, 104, 107, 110, 113
MhlI	GDGCHC	1 cut(s)	41
MlsI	TGGCCA	1 cut(s)	390
MluCI	AATT	1 cut(s)	425
MluNI	TGGCCA	1 cut(s)	390
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	5 cut(s)	23, 246, 262, 292, 439
Mox20I	TGGCCA	1 cut(s)	390
MroXI	GAANNNNTTC	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	150
Msp20I	TGGCCA	1 cut(s)	390
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	181
Mva1269I	GAATGC	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	396
NciI	CCSGG	1 cut(s)	181
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	1 cut(s)	415
NlaIII	CATG	3 cut(s)	27, 262, 406
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	3 cut(s)	27, 262, 406
PctI	GAATGC	1 cut(s)	164
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	9 cut(s)	15, 44, 53, 60, 74, 189, 324, 378, 450
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SpeI	ACTAGT	1 cut(s)	227
Sse9I	AATT	1 cut(s)	425
SsiI	CCGC	1 cut(s)	162
SspMI	CTAG	2 cut(s)	228, 478
StyD4I	CCNGG	1 cut(s)	179
TaaI	ACNGT	2 cut(s)	217, 314
TaqI	TCGA	1 cut(s)	289
TasI	AATT	1 cut(s)	425
TfiI	GAWTC	1 cut(s)	142
TscAI	CASTG	2 cut(s)	220, 351
TseFI	GTSAC	1 cut(s)	3
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	134, 210
TspRI	CASTG	2 cut(s)	220, 351
XapI	RAATTY	1 cut(s)	425
XceI	RCATGY	3 cut(s)	27, 262, 406
XmiI	GTMKAC	2 cut(s)	309, 316
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	2 cut(s)	228, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.