Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Forward (+)

4339512 .. 4340009

Gene Structure 498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36240

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAGTTTGGAGGAACACGTGTTTATTGGGAACTGGACCATGCCCGGAAGGTGTTTGATGAAATGCTTGAGAGAAATACTATGTCGTGGACAAGATGTTGCGTTGGGTGAGAGGATGTTGGGCTTACATTGGGGAGTCTGGACTGAAGAGTGTAATATGCTTATGGTGAATTCACTTGTTGATATGTTTATGAAATTTGGGGATACTAGTGCTGCAAAGTGTCTTTTTGATGAATGTGTGGATAAAAACTTGGTTCTTTACTGTAGGGATTTGTCAAATTATGTGCGCCAGAGATTGGCTGGTGAAGTAATTTCGGTGATGGGTGACATGCTACAACAGGGCCTAAGACCCGACAAGGTTACCATTTTGTCTGCAATCTCAGCTTTGGCACAACTAAGCAATTCTCTCACTGGAAAGTATTGCATGTTTATGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

145

Amino Acids

16.45

Weight (kDa)

5.65

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	295
AcsI	RAATTY	2 cut(s)	169, 194
AcuI	CTGAAG	1 cut(s)	165
AcvI	CACGTG	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	295
AflIII	ACRYGT	2 cut(s)	16, 18
AhlI	ACTAGT	1 cut(s)	206
AluBI	AGCT	1 cut(s)	383
AluI	AGCT	1 cut(s)	383
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	2 cut(s)	169, 194
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	2 cut(s)	36, 340
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	5 cut(s)	119, 178, 314, 328, 335
AvaII	GGWCC	1 cut(s)	36
BbrPI	CACGTG	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	1 cut(s)	313
BciVI	GTATCC	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	45
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	1 cut(s)	207
BfmI	CTRYAG	1 cut(s)	262
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	36, 340
BmrFI	CCNGG	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	2 cut(s)	38, 415
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	38, 415
BseXI	GCAGC	1 cut(s)	199
BshFI	GGCC	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	295
BsnI	GGCC	1 cut(s)	342
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	1 cut(s)	392
BsrI	ACTGG	2 cut(s)	38, 415
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	141
BstBAI	YACGTR	1 cut(s)	19
BstDEI	CTNAG	3 cut(s)	344, 379, 395
BstEII	GGTNACC	1 cut(s)	358
BstF5I	GGATG	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	288
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNSI	RCATGY	2 cut(s)	331, 427
BstPI	GGTNACC	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	262
BstV1I	GCAGC	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	408
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	2 cut(s)	36, 340
CviAII	CATG	3 cut(s)	40, 328, 424
CviJI	RGCY	4 cut(s)	123, 299, 342, 383
CviKI_1	RGCY	4 cut(s)	123, 299, 342, 383
DdeI	CTNAG	3 cut(s)	344, 379, 395
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	165
Eco72I	CACGTG	1 cut(s)	19
Eco91I	GGTNACC	1 cut(s)	358
EcoO109I	RGGNCCY	1 cut(s)	340
EcoO65I	GGTNACC	1 cut(s)	358
EcoRI	GAATTC	1 cut(s)	169
FaeI	CATG	3 cut(s)	43, 331, 427
FatI	CATG	3 cut(s)	39, 327, 423
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	3 cut(s)	43, 331, 427
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	5 cut(s)	119, 178, 314, 328, 335
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	215, 374, 423
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	3 cut(s)	344, 379, 395
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	3 cut(s)	43, 331, 427
HspAI	GCGC	1 cut(s)	286
LpnPI	CCDG	7 cut(s)	19, 58, 124, 285, 302, 323, 396
Lsp1109I	GCAGC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	323, 358
MboII	GAAGA	1 cut(s)	158
MluCI	AATT	5 cut(s)	169, 194, 277, 309, 400
MlyI	GAGTC	1 cut(s)	144
MnlI	CCTC	2 cut(s)	4, 105
MslI	CAYNNNNRTG	1 cut(s)	428
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	380
NciI	CCSGG	1 cut(s)	45
NlaIII	CATG	3 cut(s)	43, 331, 427
NmuCI	GTSAC	1 cut(s)	323
NspI	RCATGY	2 cut(s)	331, 427
PflMI	CCANNNNNTGG	1 cut(s)	295
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	1 cut(s)	143
PmaCI	CACGTG	1 cut(s)	19
PmlI	CACGTG	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	1 cut(s)	19
PspCI	CACGTG	1 cut(s)	19
PspEI	GGTNACC	1 cut(s)	358
PspPI	GGNCC	2 cut(s)	36, 340
RseI	CAYNNNNRTG	1 cut(s)	428
SatI	GCNGC	1 cut(s)	213
Sau96I	GGNCC	2 cut(s)	36, 340
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	4 cut(s)	21, 53, 360, 385
SfcI	CTRYAG	1 cut(s)	262
SinI	GGWCC	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
SpeI	ACTAGT	1 cut(s)	206
Sse9I	AATT	5 cut(s)	169, 194, 277, 309, 400
SspMI	CTAG	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	1 cut(s)	21
TasI	AATT	5 cut(s)	169, 194, 277, 309, 400
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	3 cut(s)	74, 206, 246
TspRI	CASTG	1 cut(s)	415
Van91I	CCANNNNNTGG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	2 cut(s)	169, 194
XceI	RCATGY	2 cut(s)	331, 427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.