Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028698.1

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2092

Gene Structure 2092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028698.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 841 bp

tgcttcagctgagtcctttggtccagccaccccaagtttcatagctcccactaaccaaaacgaacccaaatccatagccaaggacacttccccaactgggtcactcaaaaactgtaaaaccataaaccaagtgaagcaacttcactgtcacatcactaagaaaggcgtcagtcacagaccctctaatgttaccaagctcattagcacatgtgccgaaacgggcaccttcgaaagcttagactatggccgaaaagccttcaacttgttccttgaagaagaagaagaagaagaagaagaagaagaagaagaaacaaagggtgtattgttcatgtacaattctctgataaagggttactctgaatgtggggaattggattatgcccagaaggtgtttgatgaaatgcttgagagaaacactgtgtcgtggactagtttgatttgtggttatgatagcaggaatatgccaaaggaggctgttttctttgtttttcgagatggtggctactgggatcaaacccaattcggtgactatggtgtgtgtcatttctgcctgcgcaaatggtctagtggggtggttgatcaagagtttgcagcagacttagccatagccaagtggcatttcatacctcaccttcaaaaccgaacagtttcagagcagccaaacgaggtgaaaacttcgtcgttcatgagcgattttctggagaagtgcggtggctgtgcggttctggaaggcgggtttgcgactgaggtggaacgacatggagctgatctcaacgaccctctctggagcgccaaatgcctcgtcagttctcctcacctcgtccgtagggtacgtacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

279

Amino Acids

31.37

Weight (kDa)

5.13

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	555
AccB1I	GGYRCC	1 cut(s)	222
AciI	CCGC	3 cut(s)	709, 720, 733
AclWI	GGATC	1 cut(s)	517
AcoI	YGGCCR	1 cut(s)	245
AcyI	GRCGYC	1 cut(s)	166
AfaI	GTAC	3 cut(s)	333, 832, 836
AfiI	CCNNNNNNNGG	1 cut(s)	97
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	3 cut(s)	260, 273, 636
AhlI	ACTAGT	1 cut(s)	429
AjuI	GAANNNNNNNTTGG	2 cut(s)	603, 635
AluBI	AGCT	5 cut(s)	9, 45, 197, 235, 765
AluI	AGCT	5 cut(s)	9, 45, 197, 235, 765
AlwI	GGATC	1 cut(s)	517
AoxI	GGCC	1 cut(s)	245
ApeKI	GCWGC	2 cut(s)	591, 656
ArsI	GACNNNNNNTTYG	2 cut(s)	787, 819
Asp700I	GAANNNNTTC	1 cut(s)	647
AspLEI	GCGC	2 cut(s)	556, 792
AspS9I	GGNCC	1 cut(s)	21
AsuHPI	GGTGA	4 cut(s)	537, 621, 680, 807
AsuII	TTCGAA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	21
BaeGI	GKGCMC	1 cut(s)	225
BaeI	ACNNNNGTAYC	1 cut(s)	822
BanI	GGYRCC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	603, 668
BccI	CCATC	1 cut(s)	489
BclI	TGATCA	1 cut(s)	578
BcuI	ACTAGT	1 cut(s)	429
BfaI	CTAG	2 cut(s)	430, 565
BfoI	RGCGCY	1 cut(s)	793
BisI	GCNGC	2 cut(s)	592, 657
BlsI	GCNGC	2 cut(s)	593, 658
Bme18I	GGWCC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	21
BmiI	GGNNCC	1 cut(s)	224
BmrI	ACTGGG	2 cut(s)	106, 515
BmuI	ACTGGG	2 cut(s)	106, 515
BplI	GAGNNNNNCTC	2 cut(s)	754, 786
BpmI	CTGGAG	2 cut(s)	720, 806
Bpu14I	TTCGAA	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	426
BsaAI	YACGTR	2 cut(s)	834, 838
BsaHI	GRCGYC	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	2 cut(s)	101, 510
BseDI	CCNNGG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	736
BseNI	ACTGG	2 cut(s)	101, 510
BseRI	GAGGAG	1 cut(s)	802
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	2 cut(s)	603, 668
BshFI	GGCC	1 cut(s)	247
BshNI	GGYRCC	1 cut(s)	222
BsiWI	CGTACG	1 cut(s)	834
BslI	CCNNNNNNNGG	1 cut(s)	97
BsnI	GGCC	1 cut(s)	247
Bsp119I	TTCGAA	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp1407I	TGTACA	1 cut(s)	331
Bsp143I	GATC	3 cut(s)	509, 578, 767
BspACI	CCGC	3 cut(s)	709, 720, 733
BspANI	GGCC	1 cut(s)	247
BspCNI	CTCAG	1 cut(s)	737
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	1 cut(s)	224
BspPI	GGATC	1 cut(s)	517
BspT104I	TTCGAA	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	222
BsrGI	TGTACA	1 cut(s)	331
BsrI	ACTGG	2 cut(s)	101, 510
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	3 cut(s)	509, 578, 767
BssNI	GRCGYC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	79
Bst4CI	ACNGT	4 cut(s)	114, 147, 419, 647
BstACI	GRCGYC	1 cut(s)	166
BstAUI	TGTACA	1 cut(s)	331
BstBAI	YACGTR	2 cut(s)	834, 838
BstBI	TTCGAA	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	5 cut(s)	10, 157, 236, 599, 745
BstH2I	RGCGCY	1 cut(s)	793
BstHHI	GCGC	2 cut(s)	556, 792
BstKTI	GATC	3 cut(s)	512, 581, 770
BstMBI	GATC	3 cut(s)	509, 578, 767
BstMWI	GCNNNNNNNGC	2 cut(s)	600, 796
BstNSI	RCATGY	1 cut(s)	211
BstSLI	GKGCMC	1 cut(s)	225
BstSNI	TACGTA	2 cut(s)	834, 838
BstV1I	GCAGC	2 cut(s)	603, 668
BsuRI	GGCC	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	143, 415
Cac8I	GCNNGC	1 cut(s)	552
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	2 cut(s)	556, 792
Cfr13I	GGNCC	1 cut(s)	21
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	3 cut(s)	332, 831, 835
CviAII	CATG	4 cut(s)	208, 329, 686, 759
CviQI	GTAC	3 cut(s)	332, 831, 835
DdeI	CTNAG	5 cut(s)	10, 157, 236, 599, 745
DpnI	GATC	3 cut(s)	511, 580, 769
DpnII	GATC	3 cut(s)	509, 578, 767
EaeI	YGGCCR	1 cut(s)	245
Eco105I	TACGTA	2 cut(s)	834, 838
Eco130I	CCWWGG	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	4 cut(s)	211, 332, 689, 762
FatI	CATG	4 cut(s)	207, 328, 685, 758
FauI	CCCGC	1 cut(s)	726
FbaI	TGATCA	1 cut(s)	578
Fnu4HI	GCNGC	2 cut(s)	592, 657
Fsp4HI	GCNGC	2 cut(s)	592, 657
FspBI	CTAG	2 cut(s)	430, 565
FspI	TGCGCA	1 cut(s)	555
GlaI	GCGC	2 cut(s)	555, 791
GluI	GCNGC	2 cut(s)	592, 657
GsuI	CTGGAG	2 cut(s)	720, 806
HaeII	RGCGCY	1 cut(s)	793
HaeIII	GGCC	1 cut(s)	247
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	2 cut(s)	556, 792
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	4 cut(s)	211, 332, 689, 762
Hin6I	GCGC	2 cut(s)	554, 790
HinP1I	GCGC	2 cut(s)	554, 790
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	1 cut(s)	12
HphI	GGTGA	4 cut(s)	537, 621, 680, 807
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	3 cut(s)	343, 359, 653
Hpy188III	TCNNGA	6 cut(s)	492, 582, 686, 699, 726, 785
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	1 cut(s)	683
HpyAV	CCTTC	5 cut(s)	236, 266, 380, 642, 723
HpyCH4III	ACNGT	4 cut(s)	114, 147, 419, 647
HpyCH4IV	ACGT	2 cut(s)	833, 837
HpyCH4V	TGCA	1 cut(s)	591
HpyF10VI	GCNNNNNNNGC	2 cut(s)	600, 796
HpyF3I	CTNAG	5 cut(s)	10, 157, 236, 599, 745
HpySE526I	ACGT	2 cut(s)	833, 837
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	4 cut(s)	211, 332, 689, 762
HspAI	GCGC	2 cut(s)	554, 790
Ksp22I	TGATCA	1 cut(s)	578
Kzo9I	GATC	3 cut(s)	509, 578, 767
LmnI	GCTCC	3 cut(s)	50, 762, 787
LpnPI	CCDG	9 cut(s)	37, 82, 396, 440, 491, 564, 684, 711, 770
Lsp1109I	GCAGC	2 cut(s)	603, 668
MaeI	CTAG	2 cut(s)	430, 565
MaeII	ACGT	2 cut(s)	833, 837
MaeIII	GTNAC	6 cut(s)	100, 147, 171, 188, 351, 525
MalI	GATC	3 cut(s)	511, 580, 769
MboI	GATC	3 cut(s)	509, 578, 767
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	3 cut(s)	335, 369, 519
MlyI	GAGTC	1 cut(s)	21
MnlI	CCTC	9 cut(s)	191, 464, 637, 659, 740, 790, 810, 823, 828
MroXI	GAANNNNTTC	1 cut(s)	647
MspA1I	CMGCKG	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	600, 796
NdeII	GATC	3 cut(s)	509, 578, 767
NlaIII	CATG	4 cut(s)	211, 332, 689, 762
NlaIV	GGNNCC	1 cut(s)	224
NmuCI	GTSAC	4 cut(s)	100, 147, 171, 525
NsbI	TGCGCA	1 cut(s)	555
NspI	RCATGY	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	229
PagI	TCATGA	1 cut(s)	685
PciI	ACATGT	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	647
Pfl23II	CGTACG	1 cut(s)	834
PkrI	GCNGC	2 cut(s)	593, 658
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Ppu21I	YACGTR	2 cut(s)	834, 838
PscI	ACATGT	1 cut(s)	207
PspLI	CGTACG	1 cut(s)	834
PspN4I	GGNNCC	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	21
PvuII	CAGCTG	1 cut(s)	9
RsaI	GTAC	3 cut(s)	333, 832, 836
RsaNI	GTAC	3 cut(s)	332, 831, 835
SatI	GCNGC	2 cut(s)	592, 657
Sau3AI	GATC	3 cut(s)	509, 578, 767
Sau96I	GGNCC	1 cut(s)	21
SchI	GAGTC	1 cut(s)	21
SduI	GDGCHC	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	229
SinI	GGWCC	1 cut(s)	21
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
SnaBI	TACGTA	2 cut(s)	834, 838
SpeI	ACTAGT	1 cut(s)	429
Sse9I	AATT	3 cut(s)	335, 369, 519
SsiI	CCGC	3 cut(s)	709, 720, 733
SspMI	CTAG	2 cut(s)	430, 565
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	4 cut(s)	114, 147, 419, 647
TaiI	ACGT	2 cut(s)	836, 840
TaqI	TCGA	2 cut(s)	229, 491
TasI	AATT	3 cut(s)	335, 369, 519
TatI	WGTACW	1 cut(s)	331
TscAI	CASTG	2 cut(s)	150, 422
TseFI	GTSAC	4 cut(s)	100, 147, 171, 525
TseI	GCWGC	2 cut(s)	591, 656
Tsp45I	GTSAC	4 cut(s)	100, 147, 171, 525
TspDTI	ATGAA	5 cut(s)	29, 317, 412, 611, 674
TspGWI	ACGGA	1 cut(s)	813
TspRI	CASTG	2 cut(s)	150, 422
VpaK11BI	GGWCC	1 cut(s)	21
XceI	RCATGY	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	647
XspI	CTAG	2 cut(s)	430, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.