Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

2375543 .. 2377267

Gene Structure 1725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36049

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCTGCAATGCTTCAGCTAAGTCCTCCGCTCTCAGCCACCCAACTAACCAAAGCGAAGCTCATAAGCACATGCGCCGAAATGGGCACCTTCGAAAGGTGTTTGGAGAGAGATGTATTCATTGGGAATTCTTTGATTTGCTTTGATGCAGAATGTGGGCACTTGGATTGTGCCCGGAAGGTGTTTGATGGAATGCTTGATAGAAACACTGCGTCGTGGACTAATCAGAGAGGCTTGAAGCTCAGACTTGAAAACAATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

87

Amino Acids

9.7

Weight (kDa)

6.54

Isoelectric Point (pI)

23.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	31
AciI	CCGC	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	2 cut(s)	238, 251
AluBI	AGCT	3 cut(s)	19, 61, 241
AluI	AGCT	3 cut(s)	19, 61, 241
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	77
AsuC2I	CCSGG	1 cut(s)	175
AsuII	TTCGAA	1 cut(s)	93
BaeGI	GKGCMC	3 cut(s)	89, 162, 175
BanI	GGYRCC	1 cut(s)	86
BccI	CCATC	1 cut(s)	182
BcnI	CCSGG	1 cut(s)	175
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	136
Bpu14I	TTCGAA	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	2 cut(s)	48, 256
BseSI	GKGCMC	3 cut(s)	89, 162, 175
BshNI	GGYRCC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmI	GAATGC	1 cut(s)	198
Bsp119I	TTCGAA	1 cut(s)	93
Bsp1286I	GDGCHC	3 cut(s)	89, 162, 175
BspACI	CCGC	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	47, 255
BspLI	GGNNCC	1 cut(s)	88
BspT104I	TTCGAA	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	15
BstBI	TTCGAA	1 cut(s)	93
BstDEI	CTNAG	3 cut(s)	20, 34, 242
BstENI	CCTNNNNNAGG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	173
BstSLI	GKGCMC	3 cut(s)	89, 162, 175
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	207
CfoI	GCGC	1 cut(s)	77
CseI	GACGC	1 cut(s)	201
CviAII	CATG	1 cut(s)	72
CviJI	RGCY	6 cut(s)	5, 19, 38, 61, 234, 241
CviKI_1	RGCY	6 cut(s)	5, 19, 38, 61, 234, 241
DdeI	CTNAG	3 cut(s)	20, 34, 242
EcoNI	CCTNNNNNAGG	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	127
FaeI	CATG	1 cut(s)	75
FaiI	YATR	2 cut(s)	65, 73
FatI	CATG	1 cut(s)	71
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	1 cut(s)	6
HapII	CCGG	1 cut(s)	175
HgaI	GACGC	1 cut(s)	201
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	1 cut(s)	75
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HpaII	CCGG	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	2 cut(s)	228, 245
Hpy8I	GTNNAC	1 cut(s)	219
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	2 cut(s)	100, 172
HpyCH4V	TGCA	2 cut(s)	8, 149
HpyF3I	CTNAG	3 cut(s)	20, 34, 242
Hsp92II	CATG	1 cut(s)	75
HspAI	GCGC	1 cut(s)	75
LpnPI	CCDG	1 cut(s)	188
LweI	GCATC	1 cut(s)	136
MbiI	CCGCTC	1 cut(s)	31
MhlI	GDGCHC	3 cut(s)	89, 162, 175
MluCI	AATT	1 cut(s)	127
MnlI	CCTC	2 cut(s)	36, 224
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	1 cut(s)	175
Mva1269I	GAATGC	1 cut(s)	198
NciI	CCSGG	1 cut(s)	175
NlaIII	CATG	1 cut(s)	75
NlaIV	GGNNCC	1 cut(s)	88
NspI	RCATGY	1 cut(s)	75
NspV	TTCGAA	1 cut(s)	93
PctI	GAATGC	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	88
SatI	GCNGC	1 cut(s)	6
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	3 cut(s)	89, 162, 175
SetI	ASST	6 cut(s)	21, 63, 92, 101, 183, 243
SfaNI	GCATC	1 cut(s)	136
SfuI	TTCGAA	1 cut(s)	93
SgeI	CNNG	8 cut(s)	84, 175, 186, 187, 209, 228, 247, 260
Sse9I	AATT	1 cut(s)	127
SsiI	CCGC	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	173
TaqI	TCGA	1 cut(s)	93
TasI	AATT	1 cut(s)	127
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	214
XagI	CCTNNNNNAGG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	127
XceI	RCATGY	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.