FvH4_5g04554

ubiquitin-protein transferase activity

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
2690601 .. 2691812
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g04554.t1

Sequence Viewer

Length: 1113 bp
ATGGCACTCTTGGAACTCTTTAGGTTCTTCTTCTTCTTGCTTCCTCACATAGCATCCGCCTCCTGCGGCACATCAAAATGCACCCACCAAGGGGTAAAGGTTAAATTCCCTTTCTGGCTGACAAACCGCCAAGACTCCCGTTGTGGGTATCCAGGGTTTGGTCTCACATGCGATAGTGAAAGGAAGCAAACCCTTGTCACTCTCCCGTCTACATCAGGGGACTTCTTCGTCAACAGCATCGACTACATGGACCAAGTCGTATCGATCATCGACACCACCGCGAAAGGCTGCCTCATCAAGCGGTTCATGGACCAGGAAATCAGCCTCAATGATTCCGCCTTCTTATATGCTAATGGTGGACAGTACAAGTTCTTCAATTGCTCGCCTAAAGCAGTGGAAGTACTAGCTTATTATCCAACAATCTCTTGCCTCAGCCGTGAGGACAGCAAGGTCATTCCTGTGCCATCCAGTTCAATTTTATTGCCGTCGTCTGCGCCACCAATACCATCTGATCTTTGCTCTCTGATGTCGAAAGCTTTTGTTCCGGTGGCCTACATACCATTTGTTCCACCAAATGCATCTGATTGGGAAAATATTAACTTTGGTTTTCGGTTGGCATGGTCAGTGCCTGATTGTCGTTACTGTGAAATAGTTCATAGAGCTTGTCGATTTGAGAGTCCTACAAATATGGAGATTGGCTGTTCTGCTCCAAAAGGTCTCTCAAGTGCTGCAAGAACTGGCCTAATTATAGGCCTGGGAATCCCAGGGTTTGTGGGAATCTCTGCGCTTGTAATGTTTATAATGGAAAGGGTGAGGATCTGTCGTCAGGGCAACCACACAACGGCGGAACTATCCACGGTAACAAATGAACAACCTCCAGTAGTCACAGTGGTCGGCCTTGATGCTGAAACCATCGAATCGTATCCCCAGACTCAACTTGGTGAGAGCGTCGATTTACCAAACCCAAGTGATAAAACTTGCTCAATATGTTTGGCCGAGTACCTGGAAAAGGAAACTCTCAGGACTATACCTGAATGCAACCATTATTTTCATGCTACATGTATAGACGAATGGCTTAGAAAGAATGCAACGTGTCCCCTTTGTCGAAATTAG

Protein Analysis

371

Amino Acids

40.95

Weight (kDa)

5.75

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 22 - 91 1.4e-15 Wall-associated receptor kinase galacturonan-binding
zf-rbx1 PF12678 323 - 369 9.3e-11 RING-H2 zinc finger domain
zf-RING_2 PF13639 326 - 369 2.8e-14 Ring finger domain
zf-RING_11 PF17123 327 - 355 1.8e-08 RING-like zinc finger
zf-C3HC4_2 PF13923 327 - 368 2.9e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 327 - 368 9.6e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 327 - 369 6.6e-06 zinc-RING finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 800
AasI GACNNNNNNGTC 2 cut(s) 227, 449
AccB7I CCANNNNNTGG 1 cut(s) 158
AccI GTMKAC 1 cut(s) 209
AccII CGCG 1 cut(s) 281
AciI CCGC 7 cut(s) 57, 66, 127, 279, 301, 336, 845
AclWI GGATC 1 cut(s) 824
AcoI YGGCCR 1 cut(s) 993
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 3 cut(s) 365, 402, 1001
AfiI CCNNNNNNNGG 6 cut(s) 90, 91, 144, 158, 841, 1009
AflIII ACRYGT 2 cut(s) 1058, 1091
AgsI TTSAA 2 cut(s) 376, 474
AjnI CCWGG 5 cut(s) 151, 312, 753, 763, 1002
AluBI AGCT 3 cut(s) 407, 536, 662
AluI AGCT 3 cut(s) 407, 536, 662
Alw26I GTCTC 2 cut(s) 167, 722
AlwI GGATC 1 cut(s) 824
AlwNI CAGNNNCTG 1 cut(s) 629
AoxI GGCC 5 cut(s) 549, 739, 751, 895, 993
ApeKI GCWGC 2 cut(s) 288, 728
ApoI RAATTY 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 651
AspLEI GCGC 2 cut(s) 496, 787
AspS9I GGNCC 2 cut(s) 250, 310
AsuHPI GGTGA 2 cut(s) 823, 953
AvaII GGWCC 2 cut(s) 250, 310
BarI GAAGNNNNNNTAC 2 cut(s) 356, 388
BbvCI CCTCAGC 1 cut(s) 431
BbvI GCAGC 2 cut(s) 275, 715
BccI CCATC 3 cut(s) 472, 514, 920
BceAI ACGGC 3 cut(s) 420, 469, 858
BciT130I CCWGG 5 cut(s) 153, 314, 755, 765, 1004
BciVI GTATCC 2 cut(s) 159, 933
BcoDI GTCTC 2 cut(s) 167, 722
BfaI CTAG 1 cut(s) 404
BfuI GTATCC 2 cut(s) 159, 933
BisI GCNGC 3 cut(s) 67, 289, 729
BlsI GCNGC 3 cut(s) 68, 290, 730
BmcAI AGTACT 1 cut(s) 402
Bme1390I CCNGG 5 cut(s) 153, 314, 755, 765, 1004
Bme18I GGWCC 2 cut(s) 250, 310
BmgT120I GGNCC 2 cut(s) 250, 310
BmrFI CCNGG 5 cut(s) 153, 314, 755, 765, 1004
BmsI GCATC 4 cut(s) 62, 246, 587, 892
BpmI CTGGAG 1 cut(s) 861
Bpu10I CCTNAGC 1 cut(s) 431
BpuEI CTTGAG 1 cut(s) 706
Bsa29I ATCGAT 1 cut(s) 263
BsaI GGTCTC 2 cut(s) 167, 722
BsaJI CCNNGG 6 cut(s) 88, 152, 754, 763, 764, 855
BsaWI WCCGGW 1 cut(s) 544
Bsc4I CCNNNNNNNGG 6 cut(s) 90, 91, 144, 158, 841, 1009
Bse1I ACTGG 3 cut(s) 468, 742, 878
BseBI CCWGG 5 cut(s) 153, 314, 755, 765, 1004
BseCI ATCGAT 1 cut(s) 263
BseDI CCNNGG 6 cut(s) 88, 152, 754, 763, 764, 855
BseGI GGATG 2 cut(s) 53, 464
BseLI CCNNNNNNNGG 6 cut(s) 90, 91, 144, 158, 841, 1009
BseMII CTCAG 2 cut(s) 445, 1033
BseNI ACTGG 3 cut(s) 468, 742, 878
BseXI GCAGC 2 cut(s) 275, 715
Bsh1236I CGCG 1 cut(s) 281
BshFI GGCC 5 cut(s) 551, 741, 753, 897, 995
BshVI ATCGAT 1 cut(s) 263
BsiSI CCGG 1 cut(s) 545
BslFI GGGAC 2 cut(s) 233, 1080
BslI CCNNNNNNNGG 6 cut(s) 90, 91, 144, 158, 841, 1009
BsmAI GTCTC 2 cut(s) 167, 722
BsmFI GGGAC 2 cut(s) 233, 1080
BsmI GAATGC 2 cut(s) 1040, 1090
BsnI GGCC 5 cut(s) 551, 741, 753, 897, 995
Bso31I GGTCTC 2 cut(s) 167, 722
Bsp143I GATC 3 cut(s) 264, 511, 816
BspACI CCGC 7 cut(s) 57, 66, 127, 279, 301, 336, 845
BspANI GGCC 5 cut(s) 551, 741, 753, 897, 995
BspCNI CTCAG 2 cut(s) 444, 1032
BspDI ATCGAT 1 cut(s) 263
BspFNI CGCG 1 cut(s) 281
BspPI GGATC 1 cut(s) 824
BspTNI GGTCTC 2 cut(s) 167, 722
BsrI ACTGG 3 cut(s) 468, 742, 878
BssECI CCNNGG 6 cut(s) 88, 152, 754, 763, 764, 855
BssMI GATC 3 cut(s) 264, 511, 816
BssT1I CCWWGG 1 cut(s) 88
Bst2UI CCWGG 5 cut(s) 153, 314, 755, 765, 1004
Bst4CI ACNGT 4 cut(s) 363, 644, 859, 889
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 3 cut(s) 431, 1019, 1076
BstDSI CCRYGG 1 cut(s) 855
BstENI CCTNNNNNAGG 1 cut(s) 1007
BstF5I GGATG 2 cut(s) 53, 464
BstFNI CGCG 1 cut(s) 281
BstHHI GCGC 2 cut(s) 496, 787
BstKTI GATC 3 cut(s) 267, 514, 819
BstMAI GTCTC 2 cut(s) 167, 722
BstMBI GATC 3 cut(s) 264, 511, 816
BstNI CCWGG 5 cut(s) 153, 314, 755, 765, 1004
BstNSI RCATGY 2 cut(s) 171, 1062
BstSCI CCNGG 5 cut(s) 151, 312, 753, 763, 1002
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 2 cut(s) 275, 715
BstX2I RGATCY 1 cut(s) 816
BstYI RGATCY 1 cut(s) 816
Bsu15I ATCGAT 1 cut(s) 263
BsuI GTATCC 2 cut(s) 159, 933
BsuRI GGCC 5 cut(s) 551, 741, 753, 897, 995
BsuTUI ATCGAT 1 cut(s) 263
BtgI CCRYGG 1 cut(s) 855
BtsCI GGATG 2 cut(s) 53, 464
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 3 cut(s) 399, 630, 894
Cac8I GCNNGC 1 cut(s) 383
CaiI CAGNNNCTG 1 cut(s) 629
CfoI GCGC 2 cut(s) 496, 787
Cfr13I GGNCC 2 cut(s) 250, 310
ClaI ATCGAT 1 cut(s) 263
CseI GACGC 1 cut(s) 937
Csp6I GTAC 3 cut(s) 364, 401, 1000
CviAII CATG 6 cut(s) 168, 247, 307, 618, 1052, 1059
CviQI GTAC 3 cut(s) 364, 401, 1000
DdeI CTNAG 3 cut(s) 431, 1019, 1076
DpnI GATC 3 cut(s) 266, 513, 818
DpnII GATC 3 cut(s) 264, 511, 816
DrdI GACNNNNNNGTC 2 cut(s) 227, 449
DseDI GACNNNNNNGTC 2 cut(s) 227, 449
EaeI YGGCCR 1 cut(s) 993
EciI GGCGGA 3 cut(s) 46, 325, 860
Eco130I CCWWGG 1 cut(s) 88
Eco147I AGGCCT 1 cut(s) 753
Eco31I GGTCTC 2 cut(s) 167, 722
Eco47I GGWCC 2 cut(s) 250, 310
EcoNI CCTNNNNNAGG 1 cut(s) 1007
EcoRII CCWGG 5 cut(s) 151, 312, 753, 763, 1002
EcoT14I CCWWGG 1 cut(s) 88
EcoT22I ATGCAT 1 cut(s) 580
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 6 cut(s) 171, 250, 310, 621, 1055, 1062
FaqI GGGAC 2 cut(s) 233, 1080
FatI CATG 6 cut(s) 167, 246, 306, 617, 1051, 1058
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 3 cut(s) 67, 289, 729
FokI GGATG 2 cut(s) 40, 451
Fsp4HI GCNGC 3 cut(s) 67, 289, 729
FspBI CTAG 1 cut(s) 404
GlaI GCGC 2 cut(s) 495, 786
GluI GCNGC 3 cut(s) 67, 289, 729
GsuI CTGGAG 1 cut(s) 861
HaeIII GGCC 5 cut(s) 551, 741, 753, 897, 995
HapII CCGG 1 cut(s) 545
HgaI GACGC 1 cut(s) 937
HhaI GCGC 2 cut(s) 496, 787
Hin1II CATG 6 cut(s) 171, 250, 310, 621, 1055, 1062
Hin6I GCGC 2 cut(s) 494, 785
HinP1I GCGC 2 cut(s) 494, 785
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 7 cut(s) 134, 332, 676, 759, 777, 917, 931
HpaII CCGG 1 cut(s) 545
HphI GGTGA 2 cut(s) 823, 953
Hpy166II GTNNAC 3 cut(s) 210, 232, 359
Hpy188I TCNGA 3 cut(s) 511, 525, 583
Hpy188III TCNNGA 1 cut(s) 1021
Hpy8I GTNNAC 3 cut(s) 210, 232, 359
Hpy99I CGWCG 2 cut(s) 490, 953
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 4 cut(s) 363, 644, 859, 889
HpyCH4IV ACGT 1 cut(s) 1091
HpyCH4V TGCA 5 cut(s) 81, 578, 731, 1038, 1088
HpyF3I CTNAG 3 cut(s) 431, 1019, 1076
HpySE526I ACGT 1 cut(s) 1091
Hsp92II CATG 6 cut(s) 171, 250, 310, 621, 1055, 1062
HspAI GCGC 2 cut(s) 494, 785
Kzo9I GATC 3 cut(s) 264, 511, 816
LmnI GCTCC 1 cut(s) 712
Lsp1109I GCAGC 2 cut(s) 275, 715
LweI GCATC 4 cut(s) 62, 246, 587, 892
MaeI CTAG 1 cut(s) 404
MaeII ACGT 1 cut(s) 1091
MaeIII GTNAC 4 cut(s) 196, 638, 859, 883
MalI GATC 3 cut(s) 266, 513, 818
MboI GATC 3 cut(s) 264, 511, 816
MboII GAAGA 5 cut(s) 19, 22, 25, 217, 364
MfeI CAATTG 1 cut(s) 376
MflI RGATCY 1 cut(s) 816
MluCI AATT 5 cut(s) 104, 376, 474, 744, 1108
MlyI GAGTC 3 cut(s) 128, 685, 925
MmeI TCCRAC 1 cut(s) 440
MnlI CCTC 8 cut(s) 54, 70, 302, 335, 433, 440, 807, 885
Mph1103I ATGCAT 1 cut(s) 580
MroXI GAANNNNTTC 1 cut(s) 651
MseI TTAA 2 cut(s) 102, 597
MslI CAYNNNNRTG 2 cut(s) 76, 458
MspI CCGG 1 cut(s) 545
MspR9I CCNGG 5 cut(s) 153, 314, 755, 765, 1004
MunI CAATTG 1 cut(s) 376
Mva1269I GAATGC 2 cut(s) 1040, 1090
MvaI CCWGG 5 cut(s) 153, 314, 755, 765, 1004
MvnI CGCG 1 cut(s) 281
NdeII GATC 3 cut(s) 264, 511, 816
NlaIII CATG 6 cut(s) 171, 250, 310, 621, 1055, 1062
NmeAIII GCCGAG 1 cut(s) 1021
NmuCI GTSAC 2 cut(s) 196, 883
NsiI ATGCAT 1 cut(s) 580
NspI RCATGY 2 cut(s) 171, 1062
PasI CCCWGGG 1 cut(s) 764
PceI AGGCCT 1 cut(s) 753
PciI ACATGT 1 cut(s) 1058
PctI GAATGC 2 cut(s) 1040, 1090
PdmI GAANNNNTTC 1 cut(s) 651
PfeI GAWTC 4 cut(s) 332, 759, 777, 917
PflFI GACNNNGTC 1 cut(s) 254
PflMI CCANNNNNTGG 1 cut(s) 158
PkrI GCNGC 3 cut(s) 68, 290, 730
PleI GAGTC 3 cut(s) 128, 684, 925
PpsI GAGTC 3 cut(s) 128, 684, 925
PscI ACATGT 1 cut(s) 1058
PsiI TTATAA 1 cut(s) 800
Psp6I CCWGG 5 cut(s) 151, 312, 753, 763, 1002
PspGI CCWGG 5 cut(s) 151, 312, 753, 763, 1002
PspPI GGNCC 2 cut(s) 250, 310
PstNI CAGNNNCTG 1 cut(s) 629
PsuI RGATCY 1 cut(s) 816
PsyI GACNNNGTC 1 cut(s) 254
RsaI GTAC 3 cut(s) 365, 402, 1001
RsaNI GTAC 3 cut(s) 364, 401, 1000
RseI CAYNNNNRTG 2 cut(s) 76, 458
SaqAI TTAA 2 cut(s) 102, 597
SatI GCNGC 3 cut(s) 67, 289, 729
Sau3AI GATC 3 cut(s) 264, 511, 816
Sau96I GGNCC 2 cut(s) 250, 310
ScaI AGTACT 1 cut(s) 402
SchI GAGTC 3 cut(s) 128, 685, 925
ScrFI CCNGG 5 cut(s) 153, 314, 755, 765, 1004
SfaNI GCATC 4 cut(s) 62, 246, 587, 892
SinI GGWCC 2 cut(s) 250, 310
SmiMI CAYNNNNRTG 2 cut(s) 76, 458
SmlI CTYRAG 1 cut(s) 721
SmoI CTYRAG 1 cut(s) 721
Sse9I AATT 5 cut(s) 104, 376, 474, 744, 1108
SseBI AGGCCT 1 cut(s) 753
SsiI CCGC 7 cut(s) 57, 66, 127, 279, 301, 336, 845
SspI AATATT 1 cut(s) 595
SspMI CTAG 1 cut(s) 404
StuI AGGCCT 1 cut(s) 753
StyD4I CCNGG 5 cut(s) 151, 312, 753, 763, 1002
StyI CCWWGG 1 cut(s) 88
TaaI ACNGT 4 cut(s) 363, 644, 859, 889
TaiI ACGT 1 cut(s) 1094
TaqI TCGA 8 cut(s) 240, 263, 270, 530, 667, 915, 951, 1105
TasI AATT 5 cut(s) 104, 376, 474, 744, 1108
TatI WGTACW 2 cut(s) 363, 400
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 4 cut(s) 332, 759, 777, 917
Tru1I TTAA 2 cut(s) 102, 597
Tru9I TTAA 2 cut(s) 102, 597
TscAI CASTG 3 cut(s) 399, 630, 894
TseFI GTSAC 2 cut(s) 196, 883
TseI GCWGC 2 cut(s) 288, 728
Tsp45I GTSAC 2 cut(s) 196, 883
TspDTI ATGAA 4 cut(s) 295, 644, 882, 1040
TspRI CASTG 3 cut(s) 399, 630, 894
Tth111I GACNNNGTC 1 cut(s) 254
Van91I CCANNNNNTGG 1 cut(s) 158
VpaK11BI GGWCC 2 cut(s) 250, 310
XagI CCTNNNNNAGG 1 cut(s) 1007
XapI RAATTY 1 cut(s) 104
XceI RCATGY 2 cut(s) 171, 1062
XcmI CCANNNNNNNNNTGG 1 cut(s) 935
XmiI GTMKAC 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 651
XspI CTAG 1 cut(s) 404
ZrmI AGTACT 1 cut(s) 402
Zsp2I ATGCAT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.