Rh7BG370800

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000675
Physical Location & Seq
Forward (+)
39812079 .. 39813679
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG370800.1

Sequence Viewer

Length: 1146 bp
ATGGCAACCTCAGACATATTATTCTCATTCTTCTTCTTCTTCACCTTCTTACTTCCTCAGATAGCAGATAGCAGATGTGGTGGTTCAAAATGCCATGGGAGCGGCCCACTGATTCGATTCCCTTTCCGGCTAAGATACCGCCAACCGCTAAATTGTGGGTATTCCATTCATTTTGACCTTTCATGCAACAGTAAACAACAAAACACCATTCTCACCCTCCCATCTTCAGGAGACTTCGAGGTCGAGGGCATCCGTTACAGTGACCAAACCATGTGGATCAACGACCTAAACTGGTGCATGCACAAAAGATTCCTTGACAAAGACTTCAGTTTCAGTCTTGTAGGCACGCCTTTCCATTTCTGGCATAGCCTGGAAAACTATACCTACTTCAAGTGCCCGTCCAAAGTTGTGGCTATTGGGTCTTTTGCACCAATCTCTTGCCTTGGCGATTACAATTACAACGTCATTGCTGTCCCGTCGAGTTGGTCAACGACTGAGAAACCACCTCCTCAGTCTCTTTGTCGTGCAATTTCCACAGCTTTGCTTCCGGCGAGTTTTGGGTGGGGGGAGTTTGCTGTAAAGTTGACTTGGGGCGTTCCCGATTGTCGTTCTTGTGAAGCAACTGGTAGAGTTTGTAGGCCTACTGTGACAAGTTCGCACATTGAGTGCTCAACTGATGGTATCCCAATATCCGCAAAGACCGGCATAGCAATTGGCGTGTTGATTCCGGCAGGGCTGTTGTGCATTGTTGGATACGCACTCTATGTTGCGGGCAGGAGGGATGATGGTCGGGTCCAAGAAACAAACAGGCGTGGTCAGCTTCAAGAACTCATTGAAGCCAATGGACAACCTCAAGTAGTTACAGCGGGTATTGATGCTCAGACTATTGAGTCATATTTGAAGACTCAACTTGGTGAGAGTTTAGAATTACCTGACCCTAATGACAAAACTTGCTCGATATGTTTGGGTGAGTACCAGTCCAAGGAAATGCTAAGGACTATACCAGAATGCAATCATTATTTTCATGTTGGTTGCATAGACGAGTGGCTTAGAAAGAACCCAACATGTCCACTTTGTCGAAATCTTCCTCGAACACCCGAAGTGTCATTAGTGAGACCGCATGATGATCATTCTTCTATGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

381

Amino Acids

42.57

Weight (kDa)

6.36

Isoelectric Point (pI)

49.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 26 - 95 8e-15 Wall-associated receptor kinase galacturonan-binding
zf-rbx1 PF12678 316 - 360 5.6e-10 RING-H2 zinc finger domain
zf-RING_2 PF13639 317 - 360 3.5e-14 Ring finger domain
zf-RING_11 PF17123 318 - 346 7e-09 RING-like zinc finger
zf-C3HC4 PF00097 318 - 359 8.5e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 318 - 359 9.4e-08 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 239, 889
AccBSI CCGCTC 1 cut(s) 102
AciI CCGC 7 cut(s) 102, 139, 146, 693, 770, 866, 1118
AclWI GGATC 1 cut(s) 284
AcuI CTGAAG 2 cut(s) 210, 310
AfaI GTAC 1 cut(s) 974
AfiI CCNNNNNNNGG 2 cut(s) 227, 982
AflIII ACRYGT 1 cut(s) 1064
AgsI TTSAA 5 cut(s) 87, 391, 824, 836, 901
AjnI CCWGG 1 cut(s) 369
AluBI AGCT 2 cut(s) 539, 820
AluI AGCT 2 cut(s) 539, 820
Alw21I GWGCWC 1 cut(s) 671
Alw26I GTCTC 3 cut(s) 225, 519, 1108
AlwI GGATC 1 cut(s) 284
AoxI GGCC 2 cut(s) 103, 638
AspS9I GGNCC 2 cut(s) 104, 793
AsuHPI GGTGA 4 cut(s) 34, 205, 926, 980
AvaII GGWCC 1 cut(s) 793
BaeGI GKGCMC 1 cut(s) 398
BbsI GAAGAC 1 cut(s) 908
Bbv12I GWGCWC 1 cut(s) 671
BccI CCATC 3 cut(s) 229, 671, 779
BciT130I CCWGG 1 cut(s) 371
BciVI GTATCC 2 cut(s) 692, 746
BclI TGATCA 1 cut(s) 1126
BcoDI GTCTC 3 cut(s) 225, 519, 1108
BfuI GTATCC 2 cut(s) 692, 746
BisI GCNGC 1 cut(s) 103
BlsI GCNGC 1 cut(s) 104
Bme1390I CCNGG 1 cut(s) 371
Bme18I GGWCC 1 cut(s) 793
BmgT120I GGNCC 2 cut(s) 104, 793
BmiI GGNNCC 1 cut(s) 794
BmrFI CCNGG 1 cut(s) 371
BmsI GCATC 2 cut(s) 258, 865
BpiI GAAGAC 1 cut(s) 908
Bpu10I CCTNAGC 1 cut(s) 992
BpuEI CTTGAG 1 cut(s) 837
BsaI GGTCTC 1 cut(s) 1108
BsaJI CCNNGG 3 cut(s) 94, 442, 981
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 982
Bse118I RCCGGY 1 cut(s) 701
Bse1I ACTGG 3 cut(s) 296, 628, 976
Bse3DI GCAATG 1 cut(s) 465
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 3 cut(s) 94, 442, 981
BseGI GGATG 2 cut(s) 249, 787
BseLI CCNNNNNNNGG 2 cut(s) 227, 982
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 5 cut(s) 24, 71, 486, 524, 893
BseNI ACTGG 3 cut(s) 296, 628, 976
BseRI GAGGAG 1 cut(s) 498
BseSI GKGCMC 1 cut(s) 398
BshFI GGCC 2 cut(s) 105, 640
BsiHKAI GWGCWC 1 cut(s) 671
BsiSI CCGG 4 cut(s) 127, 548, 702, 728
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 2 cut(s) 227, 982
BsmAI GTCTC 3 cut(s) 225, 519, 1108
BsmFI GGGAC 1 cut(s) 458
BsmI GAATGC 1 cut(s) 1013
BsnI GGCC 2 cut(s) 105, 640
Bso31I GGTCTC 1 cut(s) 1108
Bsp1286I GDGCHC 2 cut(s) 398, 671
Bsp143I GATC 2 cut(s) 276, 1126
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 7 cut(s) 102, 139, 146, 693, 770, 866, 1118
BspANI GGCC 2 cut(s) 105, 640
BspCNI CTCAG 5 cut(s) 23, 70, 487, 523, 892
BspLI GGNNCC 1 cut(s) 794
BspPI GGATC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 1108
BsrBI CCGCTC 1 cut(s) 102
BsrDI GCAATG 1 cut(s) 465
BsrFI RCCGGY 1 cut(s) 701
BsrI ACTGG 3 cut(s) 296, 628, 976
BssAI RCCGGY 1 cut(s) 701
BssECI CCNNGG 3 cut(s) 94, 442, 981
BssMI GATC 2 cut(s) 276, 1126
BssT1I CCWWGG 3 cut(s) 94, 442, 981
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 3 cut(s) 191, 260, 646
BstC8I GCNNGC 3 cut(s) 299, 347, 772
BstDEI CTNAG 8 cut(s) 10, 57, 131, 495, 510, 879, 992, 1049
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 2 cut(s) 249, 787
BstKTI GATC 2 cut(s) 279, 1129
BstMAI GTCTC 3 cut(s) 225, 519, 1108
BstMBI GATC 2 cut(s) 276, 1126
BstMWI GCNNNNNNNGC 2 cut(s) 99, 817
BstNI CCWGG 1 cut(s) 371
BstNSI RCATGY 2 cut(s) 301, 1068
BstSCI CCNGG 1 cut(s) 369
BstSLI GKGCMC 1 cut(s) 398
BstV2I GAAGAC 1 cut(s) 908
BstXI CCANNNNNNTGG 1 cut(s) 409
BsuI GTATCC 2 cut(s) 692, 746
BsuRI GGCC 2 cut(s) 105, 640
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 2 cut(s) 249, 787
BtsIMutI CAGTG 2 cut(s) 107, 265
Cac8I GCNNGC 3 cut(s) 299, 347, 772
Cfr10I RCCGGY 1 cut(s) 701
Cfr13I GGNCC 2 cut(s) 104, 793
Csp6I GTAC 1 cut(s) 973
CspCI CAANNNNNGTGG 2 cut(s) 254, 289
CviAII CATG 7 cut(s) 95, 183, 271, 298, 1025, 1065, 1121
CviQI GTAC 1 cut(s) 973
DdeI CTNAG 8 cut(s) 10, 57, 131, 495, 510, 879, 992, 1049
DpnI GATC 2 cut(s) 278, 1128
DpnII GATC 2 cut(s) 276, 1126
DrdI GACNNNNNNGTC 2 cut(s) 239, 889
DseDI GACNNNNNNGTC 2 cut(s) 239, 889
Eco130I CCWWGG 3 cut(s) 94, 442, 981
Eco147I AGGCCT 1 cut(s) 640
Eco31I GGTCTC 1 cut(s) 1108
Eco47I GGWCC 1 cut(s) 793
Eco57I CTGAAG 2 cut(s) 210, 310
EcoRII CCWGG 1 cut(s) 369
EcoT14I CCWWGG 3 cut(s) 94, 442, 981
ErhI CCWWGG 3 cut(s) 94, 442, 981
FaeI CATG 7 cut(s) 98, 186, 274, 301, 1028, 1068, 1124
FaqI GGGAC 1 cut(s) 458
FatI CATG 7 cut(s) 94, 182, 270, 297, 1024, 1064, 1120
FauI CCCGC 2 cut(s) 763, 859
FbaI TGATCA 1 cut(s) 1126
Fnu4HI GCNGC 1 cut(s) 103
FokI GGATG 2 cut(s) 236, 794
Fsp4HI GCNGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 103
HaeIII GGCC 2 cut(s) 105, 640
HapII CCGG 4 cut(s) 127, 548, 702, 728
Hin1II CATG 7 cut(s) 98, 186, 274, 301, 1028, 1068, 1124
HincII GTYRAC 2 cut(s) 489, 585
HindII GTYRAC 2 cut(s) 489, 585
HinfI GANTC 6 cut(s) 112, 117, 309, 724, 890, 904
HpaII CCGG 4 cut(s) 127, 548, 702, 728
HphI GGTGA 4 cut(s) 34, 205, 926, 980
Hpy166II GTNNAC 4 cut(s) 194, 489, 585, 1070
Hpy188I TCNGA 3 cut(s) 13, 60, 882
Hpy188III TCNNGA 3 cut(s) 228, 599, 824
Hpy8I GTNNAC 4 cut(s) 194, 489, 585, 1070
Hpy99I CGWCG 1 cut(s) 481
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 3 cut(s) 191, 260, 646
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 8 cut(s) 186, 297, 301, 428, 527, 744, 1011, 1035
HpyF10VI GCNNNNNNNGC 2 cut(s) 99, 817
HpyF3I CTNAG 8 cut(s) 10, 57, 131, 495, 510, 879, 992, 1049
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 7 cut(s) 98, 186, 274, 301, 1028, 1068, 1124
Ksp22I TGATCA 1 cut(s) 1126
Kzo9I GATC 2 cut(s) 276, 1126
LmnI GCTCC 1 cut(s) 99
LweI GCATC 2 cut(s) 258, 865
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 4 cut(s) 254, 260, 646, 859
MalI GATC 2 cut(s) 278, 1128
MbiI CCGCTC 1 cut(s) 102
MboI GATC 2 cut(s) 276, 1126
MboII GAAGA 8 cut(s) 22, 25, 28, 31, 216, 913, 1076, 1125
MfeI CAATTG 1 cut(s) 711
MhlI GDGCHC 2 cut(s) 398, 671
MluCI AATT 5 cut(s) 151, 454, 528, 711, 926
MlyI GAGTC 2 cut(s) 898, 899
MmeI TCCRAC 1 cut(s) 730
MseI TTAA 1 cut(s) 1144
MspA1I CMGCKG 1 cut(s) 866
MspI CCGG 4 cut(s) 127, 548, 702, 728
MspR9I CCNGG 1 cut(s) 371
MunI CAATTG 1 cut(s) 711
Mva1269I GAATGC 1 cut(s) 1013
MvaI CCWGG 1 cut(s) 371
MwoI GCNNNNNNNGC 2 cut(s) 99, 817
NcoI CCATGG 1 cut(s) 94
NdeII GATC 2 cut(s) 276, 1126
NlaIII CATG 7 cut(s) 98, 186, 274, 301, 1028, 1068, 1124
NlaIV GGNNCC 1 cut(s) 794
NmuCI GTSAC 2 cut(s) 260, 646
NspI RCATGY 2 cut(s) 301, 1068
PaeI GCATGC 1 cut(s) 301
PceI AGGCCT 1 cut(s) 640
PciI ACATGT 1 cut(s) 1064
PctI GAATGC 1 cut(s) 1013
PfeI GAWTC 4 cut(s) 112, 117, 309, 724
PkrI GCNGC 1 cut(s) 104
PleI GAGTC 2 cut(s) 898, 898
PpsI GAGTC 2 cut(s) 898, 898
PscI ACATGT 1 cut(s) 1064
Psp6I CCWGG 1 cut(s) 369
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 794
PspPI GGNCC 2 cut(s) 104, 793
RsaI GTAC 1 cut(s) 974
RsaNI GTAC 1 cut(s) 973
SaqAI TTAA 1 cut(s) 1144
SatI GCNGC 1 cut(s) 103
Sau3AI GATC 2 cut(s) 276, 1126
Sau96I GGNCC 2 cut(s) 104, 793
SchI GAGTC 2 cut(s) 898, 899
ScrFI CCNGG 1 cut(s) 371
SduI GDGCHC 2 cut(s) 398, 671
SfaNI GCATC 2 cut(s) 258, 865
SinI GGWCC 1 cut(s) 793
SmlI CTYRAG 1 cut(s) 852
SmoI CTYRAG 1 cut(s) 852
SphI GCATGC 1 cut(s) 301
Sse9I AATT 5 cut(s) 151, 454, 528, 711, 926
SseBI AGGCCT 1 cut(s) 640
SsiI CCGC 7 cut(s) 102, 139, 146, 693, 770, 866, 1118
StuI AGGCCT 1 cut(s) 640
StyD4I CCNGG 1 cut(s) 369
StyI CCWWGG 3 cut(s) 94, 442, 981
TaaI ACNGT 3 cut(s) 191, 260, 646
TaiI ACGT 1 cut(s) 465
TaqI TCGA 7 cut(s) 115, 237, 243, 479, 956, 1078, 1090
TasI AATT 5 cut(s) 151, 454, 528, 711, 926
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 4 cut(s) 112, 117, 309, 724
Tru1I TTAA 1 cut(s) 1144
Tru9I TTAA 1 cut(s) 1144
TscAI CASTG 2 cut(s) 114, 265
TseFI GTSAC 2 cut(s) 260, 646
Tsp45I GTSAC 2 cut(s) 260, 646
TspDTI ATGAA 3 cut(s) 158, 171, 1013
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 2 cut(s) 114, 265
VpaK11BI GGWCC 1 cut(s) 793
XceI RCATGY 2 cut(s) 301, 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.