Prupe.5G118800_v2.0.a1

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000675
Physical Location & Seq
Reverse (-)
11968096 .. 11969305
1210 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G118800.1

Sequence Viewer

Length: 1104 bp
ATGCCTACCTTACAAATCTTGATCATCTTCCTCTTAAGCGCCGGCGCCTGTGCCGAATCATCATGCTCTTCTAGTTATATCTCATCGATTCCGATTAAATTCCCTTTCCAGCTAAAGACACTAGAGCCCTCACGTTGTGGGTATGAAGGGTTTGATGTCTCATGCAACAAAAGCAACCACAGTCAAACCCTTCTCACTCTCCCATCTTCCGGGGACTTCATCGTCCAAGGAATCTACTACTTGCGTCAAAGACTAGTGATTGCTGACCCCGCTAACTGCTTGCCTAGGCGGTTCCTAGAACATGACTTCAGTTTAATAGGTTCACCCTTCTCATTCATCCATGGCCTCGAAAACTATACGTTCCTCAACTGCTCCTACCAAGTAGAAACATCGCATGAATCTATTTCTTGCCTTAGCAATGAGCTCTACAAGGTCATTGGTGTGCCGTCGAAATCGATTAATTTTTCTGCTCCTTCTCTTTGTTCTGTGATTTCCACAGCTTTGGTTCCTCTCTCAGGGTCATTTGAGACTGATGGCTGGGACTTGCTTAACTATTATTTTGAGTTAGCATGGGATGTGCCTGATTGTCGATTTTGTGAACAATCGGGTAACGTTTGTGGGTTCAAGGATGGTAAAAGCTCGGAGCTCAAGTGCTCAAGTATTTATTCTTCAAAAAAAGGTCTCTCAGGAATTGCAAAGTACGCTTTCATGGCATTCACTGGAATCATGGCAATAATTTTCATCCTTACTCTTGTACTTCAACTGAGGGATTCTGACCGGGCACACCAACCCATGACAGAGCTATCCACCGTAACAGATCGACAGCCTCTGGTAATCAGGATAGGCCTTGACGATGCAACCATCGAGTCATATCCCACGACTCAACTTGGTGAGAGTTGGGAATTGCCCAAGCCTAATGACAGTACTTGCCCAATATGTTTGAGCACGTACAAGCCGAAGGAAACATTGAGAACCATATCAGAGTGCAACCATTATTTTCATGCTAGTTGTGTAGATGAGTGGCTTAGGGTGAGCGCGACGTGCCCGCTCTGTCGAAACCCCTCAGAGGGAAACAAAATAAGTCATTTGGCTACTGAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

368

Amino Acids

40.68

Weight (kDa)

5.41

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 221
AccB1I GGYRCC 1 cut(s) 44
AccBSI CCGCTC 1 cut(s) 1048
AccII CGCG 1 cut(s) 1037
AciI CCGC 3 cut(s) 270, 289, 1046
AclI AACGTT 1 cut(s) 612
AcsI RAATTY 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 292
AcyI GRCGYC 1 cut(s) 45
AdeI CACNNNGTG 1 cut(s) 137
AfaI GTAC 4 cut(s) 701, 756, 925, 950
AfiI CCNNNNNNNGG 4 cut(s) 209, 515, 1066, 1067
AflII CTTAAG 1 cut(s) 34
AgsI TTSAA 3 cut(s) 625, 672, 761
AhlI ACTAGT 1 cut(s) 253
AjiI CACGTC 1 cut(s) 1041
AluBI AGCT 6 cut(s) 112, 424, 500, 639, 646, 802
AluI AGCT 6 cut(s) 112, 424, 500, 639, 646, 802
Alw21I GWGCWC 4 cut(s) 426, 648, 656, 947
Alw26I GTCTC 3 cut(s) 163, 521, 686
AlwNI CAGNNNCTG 1 cut(s) 829
AoxI GGCC 2 cut(s) 343, 844
ApoI RAATTY 1 cut(s) 98
AseI ATTAAT 1 cut(s) 459
AspA2I CCTAGG 1 cut(s) 284
AspLEI GCGC 3 cut(s) 41, 47, 1037
AsuC2I CCSGG 2 cut(s) 211, 779
AsuHPI GGTGA 3 cut(s) 315, 902, 1042
AvrII CCTAGG 1 cut(s) 284
BaeGI GKGCMC 2 cut(s) 784, 1046
BanI GGYRCC 1 cut(s) 44
BanII GRGCYC 3 cut(s) 129, 426, 648
BarI GAAGNNNNNNTAC 2 cut(s) 652, 684
Bbv12I GWGCWC 4 cut(s) 426, 648, 656, 947
BccI CCATC 4 cut(s) 211, 527, 623, 869
BceAI ACGGC 1 cut(s) 430
BclI TGATCA 1 cut(s) 21
BcnI CCSGG 2 cut(s) 211, 779
BcoDI GTCTC 3 cut(s) 163, 521, 686
BcuI ACTAGT 1 cut(s) 253
BfaI CTAG 6 cut(s) 72, 122, 254, 285, 296, 1005
BfoI RGCGCY 2 cut(s) 42, 48
BfrI CTTAAG 1 cut(s) 34
BlnI CCTAGG 1 cut(s) 284
BmcAI AGTACT 1 cut(s) 925
Bme1390I CCNGG 2 cut(s) 211, 779
BmgBI CACGTC 1 cut(s) 1041
BmiI GGNNCC 3 cut(s) 46, 293, 507
BmrFI CCNGG 2 cut(s) 211, 779
BmsI GCATC 1 cut(s) 844
Bpu10I CCTNAGC 2 cut(s) 413, 1025
BpuEI CTTGAG 2 cut(s) 632, 640
BpuMI CCSGG 2 cut(s) 211, 779
Bsa29I ATCGAT 2 cut(s) 86, 455
BsaAI YACGTR 1 cut(s) 948
BsaHI GRCGYC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 686
BsaJI CCNNGG 4 cut(s) 210, 226, 284, 340
BsaXI ACNNNNNCTCC 2 cut(s) 635, 665
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 515, 1066, 1067
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 724
Bse3DI GCAATG 1 cut(s) 424
BseCI ATCGAT 2 cut(s) 86, 455
BseDI CCNNGG 4 cut(s) 210, 226, 284, 340
BseGI GGATG 4 cut(s) 336, 580, 634, 741
BseLI CCNNNNNNNGG 4 cut(s) 209, 515, 1066, 1067
BseMI GCAATG 1 cut(s) 424
BseMII CTCAG 5 cut(s) 528, 699, 755, 1077, 1086
BseNI ACTGG 1 cut(s) 724
BseSI GKGCMC 2 cut(s) 784, 1046
BseYI CCCAGC 1 cut(s) 537
Bsh1236I CGCG 1 cut(s) 1037
BshFI GGCC 2 cut(s) 345, 846
BshNI GGYRCC 1 cut(s) 44
BshVI ATCGAT 2 cut(s) 86, 455
BsiHKAI GWGCWC 4 cut(s) 426, 648, 656, 947
BsiSI CCGG 3 cut(s) 42, 210, 778
BslFI GGGAC 2 cut(s) 227, 554
BslI CCNNNNNNNGG 4 cut(s) 209, 515, 1066, 1067
BsmAI GTCTC 3 cut(s) 163, 521, 686
BsmFI GGGAC 2 cut(s) 227, 554
BsmI GAATGC 1 cut(s) 713
BsnI GGCC 2 cut(s) 345, 846
Bso31I GGTCTC 1 cut(s) 686
Bsp1286I GDGCHC 7 cut(s) 129, 426, 648, 656, 784, 947, 1046
Bsp143I GATC 2 cut(s) 21, 817
Bsp19I CCATGG 1 cut(s) 340
BspACI CCGC 3 cut(s) 270, 289, 1046
BspANI GGCC 2 cut(s) 345, 846
BspCNI CTCAG 5 cut(s) 527, 698, 756, 1076, 1087
BspDI ATCGAT 2 cut(s) 86, 455
BspFNI CGCG 1 cut(s) 1037
BspLI GGNNCC 3 cut(s) 46, 293, 507
BspQI GCTCTTC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 44
BspTI CTTAAG 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 686
BsrBI CCGCTC 1 cut(s) 1048
BsrDI GCAATG 1 cut(s) 424
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 1 cut(s) 724
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 4 cut(s) 210, 226, 284, 340
BssMI GATC 2 cut(s) 21, 817
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 3 cut(s) 226, 284, 340
Bst4CI ACNGT 3 cut(s) 182, 811, 923
Bst6I CTCTTC 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 45
BstAFI CTTAAG 1 cut(s) 34
BstBAI YACGTR 1 cut(s) 948
BstC8I GCNNGC 3 cut(s) 43, 281, 1046
BstDEI CTNAG 7 cut(s) 413, 514, 685, 764, 1025, 1063, 1095
BstDSI CCRYGG 1 cut(s) 340
BstENI CCTNNNNNAGG 1 cut(s) 513
BstF5I GGATG 4 cut(s) 336, 580, 634, 741
BstFNI CGCG 1 cut(s) 1037
BstH2I RGCGCY 2 cut(s) 42, 48
BstHHI GCGC 3 cut(s) 41, 47, 1037
BstKTI GATC 2 cut(s) 24, 820
BstMAI GTCTC 3 cut(s) 163, 521, 686
BstMBI GATC 2 cut(s) 21, 817
BstMWI GCNNNNNNNGC 6 cut(s) 171, 269, 701, 710, 1041, 1097
BstSCI CCNGG 2 cut(s) 209, 777
BstSLI GKGCMC 2 cut(s) 784, 1046
BstUI CGCG 1 cut(s) 1037
BstXI CCANNNNNNTGG 1 cut(s) 502
Bsu15I ATCGAT 2 cut(s) 86, 455
BsuRI GGCC 2 cut(s) 345, 846
BsuTUI ATCGAT 2 cut(s) 86, 455
BtgI CCRYGG 1 cut(s) 340
BtgZI GCGATG 1 cut(s) 375
BtrI CACGTC 1 cut(s) 1041
BtsCI GGATG 4 cut(s) 336, 580, 634, 741
BtsIMutI CAGTG 1 cut(s) 717
Cac8I GCNNGC 3 cut(s) 43, 281, 1046
CaiI CAGNNNCTG 1 cut(s) 829
CfoI GCGC 3 cut(s) 41, 47, 1037
Cfr10I RCCGGY 1 cut(s) 41
ClaI ATCGAT 2 cut(s) 86, 455
CseI GACGC 1 cut(s) 233
Csp6I GTAC 4 cut(s) 700, 755, 924, 949
CviQI GTAC 4 cut(s) 700, 755, 924, 949
DdeI CTNAG 7 cut(s) 413, 514, 685, 764, 1025, 1063, 1095
DinI GGCGCC 1 cut(s) 46
DpnI GATC 2 cut(s) 23, 819
DpnII GATC 2 cut(s) 21, 817
DraIII CACNNNGTG 1 cut(s) 137
DrdI GACNNNNNNGTC 1 cut(s) 221
DseDI GACNNNNNNGTC 1 cut(s) 221
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Ecl136II GAGCTC 2 cut(s) 424, 646
Eco130I CCWWGG 3 cut(s) 226, 284, 340
Eco147I AGGCCT 1 cut(s) 846
Eco24I GRGCYC 3 cut(s) 129, 426, 648
Eco31I GGTCTC 1 cut(s) 686
Eco53kI GAGCTC 2 cut(s) 424, 646
Eco57I CTGAAG 1 cut(s) 292
EcoICRI GAGCTC 2 cut(s) 424, 646
EcoNI CCTNNNNNAGG 1 cut(s) 513
EcoT14I CCWWGG 3 cut(s) 226, 284, 340
EcoT38I GRGCYC 3 cut(s) 129, 426, 648
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
ErhI CCWWGG 3 cut(s) 226, 284, 340
FaqI GGGAC 2 cut(s) 227, 554
FauI CCCGC 2 cut(s) 277, 1053
FbaI TGATCA 1 cut(s) 21
FokI GGATG 4 cut(s) 323, 587, 641, 728
FriOI GRGCYC 3 cut(s) 129, 426, 648
FspBI CTAG 6 cut(s) 72, 122, 254, 285, 296, 1005
GlaI GCGC 3 cut(s) 40, 46, 1036
GsaI CCCAGC 1 cut(s) 541
HaeII RGCGCY 2 cut(s) 42, 48
HaeIII GGCC 2 cut(s) 345, 846
HapII CCGG 3 cut(s) 42, 210, 778
HgaI GACGC 1 cut(s) 233
HhaI GCGC 3 cut(s) 41, 47, 1037
Hin1I GRCGYC 1 cut(s) 45
Hin6I GCGC 3 cut(s) 39, 45, 1035
HinP1I GCGC 3 cut(s) 39, 45, 1035
HinfI GANTC 8 cut(s) 56, 88, 231, 398, 723, 770, 866, 880
HpaII CCGG 3 cut(s) 42, 210, 778
HphI GGTGA 3 cut(s) 315, 902, 1042
Hpy166II GTNNAC 2 cut(s) 323, 599
Hpy188I TCNGA 5 cut(s) 93, 643, 775, 982, 1066
Hpy188III TCNNGA 3 cut(s) 19, 687, 838
Hpy8I GTNNAC 2 cut(s) 323, 599
Hpy99I CGWCG 2 cut(s) 451, 1042
HpyAV CCTTC 5 cut(s) 140, 200, 337, 483, 952
HpyCH4III ACNGT 3 cut(s) 182, 811, 923
HpyCH4IV ACGT 5 cut(s) 133, 359, 612, 947, 1040
HpyCH4V TGCA 4 cut(s) 165, 695, 857, 987
HpyF10VI GCNNNNNNNGC 6 cut(s) 171, 269, 701, 710, 1041, 1097
HpyF3I CTNAG 7 cut(s) 413, 514, 685, 764, 1025, 1063, 1095
HpySE526I ACGT 5 cut(s) 133, 359, 612, 947, 1040
Hsp92I GRCGYC 1 cut(s) 45
HspAI GCGC 3 cut(s) 39, 45, 1035
KasI GGCGCC 1 cut(s) 44
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 2 cut(s) 21, 817
LguI GCTCTTC 1 cut(s) 73
LmnI GCTCC 3 cut(s) 377, 475, 643
LweI GCATC 1 cut(s) 844
MaeI CTAG 6 cut(s) 72, 122, 254, 285, 296, 1005
MaeII ACGT 5 cut(s) 133, 359, 612, 947, 1040
MaeIII GTNAC 2 cut(s) 608, 811
MalI GATC 2 cut(s) 23, 819
MbiI CCGCTC 1 cut(s) 1048
MboI GATC 2 cut(s) 21, 817
MboII GAAGA 4 cut(s) 19, 60, 198, 660
MhlI GDGCHC 7 cut(s) 129, 426, 648, 656, 784, 947, 1046
MluCI AATT 5 cut(s) 98, 460, 690, 735, 902
Mly113I GGCGCC 1 cut(s) 45
MlyI GAGTC 2 cut(s) 874, 875
MreI CGCCGGCG 1 cut(s) 41
MroNI GCCGGC 1 cut(s) 41
MseI TTAA 5 cut(s) 35, 96, 314, 459, 549
MslI CAYNNNNRTG 1 cut(s) 440
MspCI CTTAAG 1 cut(s) 34
MspI CCGG 3 cut(s) 42, 210, 778
MspR9I CCNGG 2 cut(s) 211, 779
Mva1269I GAATGC 1 cut(s) 713
MvnI CGCG 1 cut(s) 1037
MwoI GCNNNNNNNGC 6 cut(s) 171, 269, 701, 710, 1041, 1097
NaeI GCCGGC 1 cut(s) 43
NarI GGCGCC 1 cut(s) 45
NciI CCSGG 2 cut(s) 211, 779
NcoI CCATGG 1 cut(s) 340
NdeII GATC 2 cut(s) 21, 817
NgoMIV GCCGGC 1 cut(s) 41
NlaIV GGNNCC 3 cut(s) 46, 293, 507
PceI AGGCCT 1 cut(s) 846
PciSI GCTCTTC 1 cut(s) 73
PcsI WCGNNNNNNNCGW 1 cut(s) 953
PctI GAATGC 1 cut(s) 713
PdiI GCCGGC 1 cut(s) 43
PfeI GAWTC 6 cut(s) 56, 88, 231, 398, 723, 770
PleI GAGTC 2 cut(s) 874, 874
PluTI GGCGCC 1 cut(s) 48
PpsI GAGTC 2 cut(s) 874, 874
Ppu21I YACGTR 1 cut(s) 948
PshBI ATTAAT 1 cut(s) 459
Psp124BI GAGCTC 2 cut(s) 426, 648
Psp1406I AACGTT 1 cut(s) 612
PspFI CCCAGC 1 cut(s) 537
PspN4I GGNNCC 3 cut(s) 46, 293, 507
PstNI CAGNNNCTG 1 cut(s) 829
RsaI GTAC 4 cut(s) 701, 756, 925, 950
RsaNI GTAC 4 cut(s) 700, 755, 924, 949
RseI CAYNNNNRTG 1 cut(s) 440
SacI GAGCTC 2 cut(s) 426, 648
SapI GCTCTTC 1 cut(s) 73
SaqAI TTAA 5 cut(s) 35, 96, 314, 459, 549
Sau3AI GATC 2 cut(s) 21, 817
ScaI AGTACT 1 cut(s) 925
SchI GAGTC 2 cut(s) 874, 875
ScrFI CCNGG 2 cut(s) 211, 779
SduI GDGCHC 7 cut(s) 129, 426, 648, 656, 784, 947, 1046
SfaNI GCATC 1 cut(s) 844
SfoI GGCGCC 1 cut(s) 46
SgrAI CRCCGGYG 1 cut(s) 41
SmiMI CAYNNNNRTG 1 cut(s) 440
SmlI CTYRAG 3 cut(s) 34, 647, 655
SmoI CTYRAG 3 cut(s) 34, 647, 655
SpeI ACTAGT 1 cut(s) 253
Sse9I AATT 5 cut(s) 98, 460, 690, 735, 902
SseBI AGGCCT 1 cut(s) 846
SsiI CCGC 3 cut(s) 270, 289, 1046
SspDI GGCGCC 1 cut(s) 44
SspMI CTAG 6 cut(s) 72, 122, 254, 285, 296, 1005
SstI GAGCTC 2 cut(s) 426, 648
StuI AGGCCT 1 cut(s) 846
StyD4I CCNGG 2 cut(s) 209, 777
StyI CCWWGG 3 cut(s) 226, 284, 340
TaaI ACNGT 3 cut(s) 182, 811, 923
TaiI ACGT 5 cut(s) 136, 362, 615, 950, 1043
TaqI TCGA 8 cut(s) 86, 348, 449, 455, 589, 820, 864, 1054
TasI AATT 5 cut(s) 98, 460, 690, 735, 902
TatI WGTACW 2 cut(s) 754, 923
TfiI GAWTC 6 cut(s) 56, 88, 231, 398, 723, 770
Tru1I TTAA 5 cut(s) 35, 96, 314, 459, 549
Tru9I TTAA 5 cut(s) 35, 96, 314, 459, 549
TscAI CASTG 1 cut(s) 724
TspDTI ATGAA 7 cut(s) 159, 208, 325, 411, 697, 730, 989
TspRI CASTG 1 cut(s) 724
Vha464I CTTAAG 1 cut(s) 34
VspI ATTAAT 1 cut(s) 459
XagI CCTNNNNNAGG 1 cut(s) 513
XapI RAATTY 1 cut(s) 98
XmaJI CCTAGG 1 cut(s) 284
XspI CTAG 6 cut(s) 72, 122, 254, 285, 296, 1005
ZrmI AGTACT 1 cut(s) 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.