Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000675

Physical Location & Seq

Genomic Coordinates Reverse (-)

31549261 .. 31550588

Gene Structure 1328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013439

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGACATGCAGTGGTTCACTGGTTTTGATTTTGGAATCCGGATTGTTTCGGTCCCATTTCAATGGCTTCGATGTGGGTGGAAGTGAATCAAGTGATGCATTGTTTGGTGCATGGTCAACGACGCTGGAGCAGGGAACTATTTTTCAGTTCAGAGTCGGGGGTGGATGCGGTGGTGTCAGCGGCAGCGGTGCTTGGGGCTTGGGGGCCATCAGATTTGTTACATTTAAGCTTGGGGGTTTTGGGTGCCTGCTAGGGTTTCTCAAATATGGGCTTCTCGGCCACATATTTAGTTTTTTAGGGAATTTATTTGCTTTTTTAGTTTTGGGTCTCCATCCTGAGGCAACTAAGAAGGTGAGTCGTGAAGACTCAGGTTCTGAACATATGGAAGATTCTTCAAAAGATGGAAGATTCTTCAAAAGATGGAGGAGGCCCAGCACCACGACGCCTACCGCCGCTACCACGGTCGCCTCTAAGTCAGCAGCCTCCGAATCAGCGGCAGAAGCGTCCACTCTCAATAGGGTTCCGCCTCCTATTTTAGCCATGAAGTCGAGGAAGATGCCGACTTGGATCGAATTGACGACGTCGTTTACCAAGCGGGATGGATTTGTTGCCTCTCGGAATTTCCAGCTCCGCCATTGTTCGCCGCAGCCGCTGCCATTGTCGTTGACAAAGGTCTCGATGACGAAGAAGCCATCGATTTATGATCTTCGCAAACAAACAGATGATCTAGATGTAGAGAATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

26.79

Weight (kDa)

9.39

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000675)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04540 FvH4_5g04550 FvH4_5g04551 FvH4_5g04552 FvH4_5g04554 FvH4_5g29040
malus_domestica	MD06G1106600.v1.1 MD14G1128600.v1.1 MD14G1128700.v1.1
prunus_persica	Prupe.5G118700_v2.0.a1 Prupe.5G118800_v2.0.a1 Prupe.5G119000_v2.0.a1 Prupe.5G119300_v2.0.a1 Prupe.5G119500_v2.0.a1 Prupe.5G119600_v2.0.a1 Prupe.5G119700_v2.0.a1 Prupe.5G119800_v2.0.a1 Prupe.5G119900_v2.0.a1
pyrus_communis	pycom06g10070 pycom06g10090
rosa_chinensis	RchiOBHm_Chr7g0194821 RchiOBHm_Chr7g0194841 RchiOBHm_Chr7g0194851 RchiOBHm_Chr7g0194861 RchiOBHm_Chr7g0194871 RchiOBHm_Chr7g0226371
rosa_laevigata	RLG00000001745 RLG00000004159 RLG00000004160 RLG00000004162 RLG00000004163 RLG00000004166 RLG00000013439
rosa_multiflora	Rmu_co8140360.1_g000001 Rmu_co8197174.1_g000001 Rmu_co8260763.1_g000001 Rmu_co8287607.1_g000001 Rmu_co8453499.1_g000001 Rmu_sc0011834.1_g000004 Rmu_sc0017428.1_g000003 Rmu_sc0040407.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260910 Rroxscaffold_3G00260920
rosa_rugosa	Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0236700
rosa_samantha	Rh7AG146400 Rh7AG146500 Rh7AG146600 Rh7AG383700 Rh7BG146300 Rh7BG146400 Rh7BG146500 Rh7BG146600 Rh7BG146900 Rh7BG147100 Rh7BG147200 Rh7BG147300 Rh7BG370800 Rh7CG150400 Rh7CG150500 Rh7CG150600 Rh7CG403300 Rh7DG147600 Rh7DG147700 Rh7DG147800 Rh7DG382100 Rh7DG482500
rosa_wichuraiana	Rw7G012490 Rw7G012500 Rw7G012510 Rw7G032160 Rw7G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	584
AccB1I	GGYRCC	1 cut(s)	243
AccIII	TCCGGA	1 cut(s)	38
AclWI	GGATC	1 cut(s)	575
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	2 cut(s)	301, 619
AcyI	GRCGYC	2 cut(s)	443, 581
AfiI	CCNNNNNNNGG	1 cut(s)	337
AgsI	TTSAA	3 cut(s)	61, 396, 415
AluBI	AGCT	2 cut(s)	229, 628
AluI	AGCT	2 cut(s)	229, 628
Alw26I	GTCTC	2 cut(s)	332, 679
AlwI	GGATC	1 cut(s)	575
AlwNI	CAGNNNCTG	2 cut(s)	374, 652
Aor13HI	TCCGGA	1 cut(s)	38
AoxI	GGCC	3 cut(s)	204, 277, 428
ApeKI	GCWGC	4 cut(s)	183, 479, 646, 652
ApoI	RAATTY	2 cut(s)	301, 619
AspS9I	GGNCC	3 cut(s)	51, 204, 429
AsuHPI	GGTGA	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	51
AxyI	CCTNAGG	1 cut(s)	336
BanI	GGYRCC	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	369
BbvI	GCAGC	4 cut(s)	195, 491, 639, 658
BccI	CCATC	6 cut(s)	215, 339, 395, 414, 593, 700
BcgI	CGANNNNNNTGC	2 cut(s)	538, 572
BcoDI	GTCTC	2 cut(s)	332, 679
BfaI	CTAG	2 cut(s)	251, 728
BisI	GCNGC	9 cut(s)	181, 184, 453, 480, 495, 644, 647, 650, 653
BlsI	GCNGC	9 cut(s)	182, 185, 454, 481, 496, 645, 648, 651, 654
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	3 cut(s)	51, 204, 429
BmiI	GGNNCC	4 cut(s)	53, 205, 245, 522
BmsI	GCATC	3 cut(s)	85, 155, 546
BoxI	GACNNNNGTC	1 cut(s)	671
BpiI	GAAGAC	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	146
Bsa29I	ATCGAT	1 cut(s)	695
BsaHI	GRCGYC	2 cut(s)	443, 581
BsaI	GGTCTC	2 cut(s)	332, 679
BsaJI	CCNNGG	1 cut(s)	459
BsaWI	WCCGGW	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	24
Bse21I	CCTNAGG	1 cut(s)	336
BseAI	TCCGGA	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	695
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	3 cut(s)	170, 331, 604
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	2 cut(s)	327, 381
BseNI	ACTGG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	439
BseXI	GCAGC	4 cut(s)	195, 491, 639, 658
BseYI	CCCAGC	1 cut(s)	431
Bsh1285I	CGRYCG	1 cut(s)	465
BshFI	GGCC	3 cut(s)	206, 279, 430
BshNI	GGYRCC	1 cut(s)	243
BshVI	ATCGAT	1 cut(s)	695
BsiEI	CGRYCG	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	2 cut(s)	332, 679
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	3 cut(s)	206, 279, 430
Bso31I	GGTCTC	2 cut(s)	332, 679
Bsp13I	TCCGGA	1 cut(s)	38
Bsp143I	GATC	3 cut(s)	567, 703, 724
BspANI	GGCC	3 cut(s)	206, 279, 430
BspCNI	CTCAG	2 cut(s)	328, 380
BspDI	ATCGAT	1 cut(s)	695
BspEI	TCCGGA	1 cut(s)	38
BspLI	GGNNCC	4 cut(s)	53, 205, 245, 522
BspPI	GGATC	1 cut(s)	575
BspT107I	GGYRCC	1 cut(s)	243
BspTNI	GGTCTC	2 cut(s)	332, 679
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	3 cut(s)	567, 703, 724
BssNI	GRCGYC	2 cut(s)	443, 581
Bst4CI	ACNGT	1 cut(s)	463
BstACI	GRCGYC	2 cut(s)	443, 581
BstAPI	GCANNNNNTGC	1 cut(s)	652
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	4 cut(s)	336, 345, 367, 471
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	3 cut(s)	170, 331, 604
BstKTI	GATC	3 cut(s)	570, 706, 727
BstMAI	GTCTC	2 cut(s)	332, 679
BstMBI	GATC	3 cut(s)	567, 703, 724
BstMCI	CGRYCG	1 cut(s)	465
BstMWI	GCNNNNNNNGC	3 cut(s)	500, 649, 652
BstNSI	RCATGY	1 cut(s)	9
BstPAI	GACNNNNGTC	1 cut(s)	671
BstV1I	GCAGC	4 cut(s)	195, 491, 639, 658
BstV2I	GAAGAC	1 cut(s)	369
BstXI	CCANNNNNNTGG	1 cut(s)	62
Bsu15I	ATCGAT	1 cut(s)	695
Bsu36I	CCTNAGG	1 cut(s)	336
BsuRI	GGCC	3 cut(s)	206, 279, 430
BsuTUI	ATCGAT	1 cut(s)	695
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	3 cut(s)	170, 331, 604
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	2 cut(s)	16, 17
Cac8I	GCNNGC	1 cut(s)	248
CaiI	CAGNNNCTG	2 cut(s)	374, 652
Cfr13I	GGNCC	3 cut(s)	51, 204, 429
ClaI	ATCGAT	1 cut(s)	695
CseI	GACGC	3 cut(s)	130, 451, 492
CviAII	CATG	3 cut(s)	6, 111, 541
DdeI	CTNAG	4 cut(s)	336, 345, 367, 471
DpnI	GATC	3 cut(s)	569, 705, 726
DpnII	GATC	3 cut(s)	567, 703, 724
EaeI	YGGCCR	1 cut(s)	277
EciI	GGCGGA	2 cut(s)	513, 620
Eco31I	GGTCTC	2 cut(s)	332, 679
Eco47I	GGWCC	1 cut(s)	51
Eco81I	CCTNAGG	1 cut(s)	336
EcoT22I	ATGCAT	1 cut(s)	100
FaeI	CATG	3 cut(s)	9, 114, 544
FaiI	YATR	8 cut(s)	7, 112, 267, 284, 381, 383, 542, 702
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	3 cut(s)	5, 110, 540
FauI	CCCGC	1 cut(s)	588
FauNDI	CATATG	1 cut(s)	381
Fnu4HI	GCNGC	9 cut(s)	181, 184, 453, 480, 495, 644, 647, 650, 653
FokI	GGATG	3 cut(s)	177, 318, 611
Fsp4HI	GCNGC	9 cut(s)	181, 184, 453, 480, 495, 644, 647, 650, 653
FspBI	CTAG	2 cut(s)	251, 728
GluI	GCNGC	9 cut(s)	181, 184, 453, 480, 495, 644, 647, 650, 653
GsaI	CCCAGC	1 cut(s)	435
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	3 cut(s)	206, 279, 430
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	3 cut(s)	130, 451, 492
Hin1I	GRCGYC	2 cut(s)	443, 581
Hin1II	CATG	3 cut(s)	9, 114, 544
HincII	GTYRAC	2 cut(s)	117, 666
HindII	GTYRAC	2 cut(s)	117, 666
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	8 cut(s)	35, 86, 153, 355, 365, 389, 408, 488
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	5 cut(s)	17, 117, 507, 588, 666
Hpy188I	TCNGA	5 cut(s)	152, 212, 376, 487, 618
Hpy188III	TCNNGA	5 cut(s)	39, 335, 359, 676, 728
Hpy8I	GTNNAC	5 cut(s)	17, 117, 507, 588, 666
Hpy99I	CGWCG	4 cut(s)	124, 445, 583, 586
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4IV	ACGT	1 cut(s)	581
HpyCH4V	TGCA	3 cut(s)	9, 98, 110
HpyF10VI	GCNNNNNNNGC	3 cut(s)	500, 649, 652
HpyF3I	CTNAG	4 cut(s)	336, 345, 367, 471
HpySE526I	ACGT	1 cut(s)	581
Hsp92I	GRCGYC	2 cut(s)	443, 581
Hsp92II	CATG	3 cut(s)	9, 114, 544
Kpn2I	TCCGGA	1 cut(s)	38
Kzo9I	GATC	3 cut(s)	567, 703, 724
LmnI	GCTCC	2 cut(s)	127, 633
LpnPI	CCDG	9 cut(s)	5, 52, 110, 116, 260, 348, 354, 445, 638
Lsp1109I	GCAGC	4 cut(s)	195, 491, 639, 658
LweI	GCATC	3 cut(s)	85, 155, 546
MaeI	CTAG	2 cut(s)	251, 728
MaeII	ACGT	1 cut(s)	581
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	3 cut(s)	569, 705, 726
MboI	GATC	3 cut(s)	567, 703, 724
MboII	GAAGA	8 cut(s)	374, 384, 398, 403, 417, 565, 697, 698
MluCI	AATT	3 cut(s)	301, 572, 619
MlyI	GAGTC	3 cut(s)	162, 359, 364
MnlI	CCTC	8 cut(s)	331, 417, 420, 478, 493, 537, 543, 622
Mph1103I	ATGCAT	1 cut(s)	100
MroI	TCCGGA	1 cut(s)	38
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	60
MspA1I	CMGCKG	4 cut(s)	180, 186, 494, 652
MspI	CCGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	3 cut(s)	500, 649, 652
NdeI	CATATG	1 cut(s)	381
NdeII	GATC	3 cut(s)	567, 703, 724
NlaIII	CATG	3 cut(s)	9, 114, 544
NlaIV	GGNNCC	4 cut(s)	53, 205, 245, 522
NmeAIII	GCCGAG	1 cut(s)	255
NsiI	ATGCAT	1 cut(s)	100
NspI	RCATGY	1 cut(s)	9
PfeI	GAWTC	5 cut(s)	35, 86, 389, 408, 488
PflFI	GACNNNGTC	1 cut(s)	580
PkrI	GCNGC	9 cut(s)	182, 185, 454, 481, 496, 645, 648, 651, 654
PleI	GAGTC	3 cut(s)	161, 359, 363
PpsI	GAGTC	3 cut(s)	161, 359, 363
PshAI	GACNNNNGTC	1 cut(s)	671
PspFI	CCCAGC	1 cut(s)	431
PspN4I	GGNNCC	4 cut(s)	53, 205, 245, 522
PspPI	GGNCC	3 cut(s)	51, 204, 429
PstNI	CAGNNNCTG	2 cut(s)	374, 652
PsyI	GACNNNGTC	1 cut(s)	580
RseI	CAYNNNNRTG	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	9 cut(s)	181, 184, 453, 480, 495, 644, 647, 650, 653
Sau3AI	GATC	3 cut(s)	567, 703, 724
Sau96I	GGNCC	3 cut(s)	51, 204, 429
SchI	GAGTC	3 cut(s)	162, 359, 364
SetI	ASST	6 cut(s)	231, 354, 373, 584, 630, 675
SfaNI	GCATC	3 cut(s)	85, 155, 546
SinI	GGWCC	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	60
Sse9I	AATT	3 cut(s)	301, 572, 619
SspMI	CTAG	2 cut(s)	251, 728
TaaI	ACNGT	1 cut(s)	463
TaiI	ACGT	1 cut(s)	584
TaqI	TCGA	5 cut(s)	69, 548, 570, 677, 695
TaqII	GACCGA	1 cut(s)	39
TasI	AATT	3 cut(s)	301, 572, 619
TauI	GCSGC	5 cut(s)	183, 455, 497, 646, 652
TfiI	GAWTC	5 cut(s)	35, 86, 389, 408, 488
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	2 cut(s)	16, 24
TseI	GCWGC	4 cut(s)	183, 479, 646, 652
TspDTI	ATGAA	1 cut(s)	557
TspRI	CASTG	2 cut(s)	16, 24
Tth111I	GACNNNGTC	1 cut(s)	580
VpaK11BI	GGWCC	1 cut(s)	51
XapI	RAATTY	2 cut(s)	301, 619
XbaI	TCTAGA	1 cut(s)	727
XceI	RCATGY	1 cut(s)	9
XspI	CTAG	2 cut(s)	251, 728
ZraI	GACGTC	1 cut(s)	582
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.