Rmu_sc0011834.1_g000004

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011834.1
OG0000675
Physical Location & Seq
Reverse (-)
27021 .. 28313
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011834.1_g000004.1.cds

Sequence Viewer

Length: 1149 bp
atggcaaccataatcacattactgctattgttcttctccttcttcttcttcttccttcctcacatagcagctacaacctgcggcgcatcagcatgcgctgccagcggcccgtcagttcgattcccattccggctaactgatcgccagcaaacgggttgtgggtattccggtaagtttggtgtatcgtgcaacggacacaaacaaaccattcttaacctcccatcttccggaaacttcacggttgagagcatcagttacaaggaccaactcgtgtggatcaacgacctcgacaactgcatcttcaagcggtttcttgacaaggacttcagtctcataggttcacccttccagtacgcgcttgaccttcaagagtacaccttctacaaatgttcgccccaacttgtgccactgtggtctcccatctcctgtctcagcagtgacaactctgaggtcattggcgtagcgagctggtcaacgttatcgagatcaccttctccctattgtgatgtgattaccagagctttggttccagcaaaaagttatgagttggggaattctgactttggtgtggggctgacttggaaggagcctgattgtcgttcttgtgaagcaagtggtaaggtttgtgggtttcagaatggttcacagtcgaaaattcactgctctagtactctatcttatggtctctcaaaagctacgaagtatggcatagcgattggcgtattaattccagggctattatccattacctgttgtgcactttatgtctcagccccgagaagggatcatggtcgaatccaagaatctaccaccgaattatccggtactgtaactaatcgtcaacctcaagtattcatagcaggccttgatggtcagacaattgagtcatatcccaagactcaactcggcgagaggttggaattgcctgaccctaatgacaaaacttgtccaatatgtctgggtgagtaccaaccgaaggaaactctgaggactataccagaatgtaaccattatttccatgctaattgcattgacgaatggcttagaaaaaatccgacatgcccgctttgtcgcaatctacccggtctttgtcgaaatccactggaggtgtcatcagtgagaccacgtgatgattatgctatatattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

382

Amino Acids

42.22

Weight (kDa)

6.94

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 883
Acc36I ACCTGC 1 cut(s) 86
AccII CGCG 1 cut(s) 356
AccIII TCCGGA 1 cut(s) 227
AciI CCGC 4 cut(s) 81, 105, 307, 1064
AclI AACGTT 1 cut(s) 476
AclWI GGATC 2 cut(s) 284, 792
AcsI RAATTY 2 cut(s) 553, 654
AcuI CTGAAG 1 cut(s) 310
AcvI CACGTG 1 cut(s) 1127
AfaI GTAC 5 cut(s) 353, 374, 670, 826, 968
AfiI CCNNNNNNNGG 5 cut(s) 151, 227, 780, 781, 976
AgsI TTSAA 2 cut(s) 304, 368
AjnI CCWGG 1 cut(s) 730
AluBI AGCT 4 cut(s) 71, 468, 521, 695
AluI AGCT 4 cut(s) 71, 468, 521, 695
Alw21I GWGCWC 1 cut(s) 760
Alw26I GTCTC 6 cut(s) 335, 420, 434, 689, 772, 1114
Alw44I GTGCAC 1 cut(s) 756
AlwI GGATC 2 cut(s) 284, 792
Ama87I CYCGRG 1 cut(s) 775
Aor13HI TCCGGA 1 cut(s) 227
AoxI GGCC 2 cut(s) 106, 862
ApaLI GTGCAC 1 cut(s) 756
ApeKI GCWGC 2 cut(s) 68, 98
ApoI RAATTY 2 cut(s) 553, 654
AseI ATTAAT 1 cut(s) 725
AspLEI GCGC 3 cut(s) 86, 98, 358
AspS9I GGNCC 2 cut(s) 107, 262
AsuC2I CCSGG 1 cut(s) 1083
AsuHPI GGTGA 3 cut(s) 333, 480, 974
AvaI CYCGRG 1 cut(s) 775
AvaII GGWCC 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 760
BauI CACGAG 1 cut(s) 269
BbrPI CACGTG 1 cut(s) 1127
Bbv12I GWGCWC 1 cut(s) 760
BbvI GCAGC 2 cut(s) 80, 85
BccI CCATC 3 cut(s) 229, 428, 863
BciT130I CCWGG 1 cut(s) 732
BcnI CCSGG 1 cut(s) 1083
BcoDI GTCTC 6 cut(s) 335, 420, 434, 689, 772, 1114
BfaI CTAG 1 cut(s) 666
BfuAI ACCTGC 1 cut(s) 86
BisI GCNGC 4 cut(s) 69, 82, 99, 106
BlsI GCNGC 4 cut(s) 70, 83, 100, 107
BmcAI AGTACT 1 cut(s) 670
Bme1390I CCNGG 2 cut(s) 732, 1083
Bme18I GGWCC 1 cut(s) 262
BmeT110I CYCGRG 1 cut(s) 775
BmgT120I GGNCC 2 cut(s) 107, 262
BmiI GGNNCC 2 cut(s) 528, 588
BmrFI CCNGG 2 cut(s) 732, 1083
BmsI GCATC 3 cut(s) 95, 258, 306
BoxI GACNNNNGTC 1 cut(s) 327
BpmI CTGGAG 1 cut(s) 1124
BpuEI CTTGAG 1 cut(s) 831
BpuMI CCSGG 1 cut(s) 1083
BsaAI YACGTR 1 cut(s) 1127
BsaI GGTCTC 3 cut(s) 420, 689, 1114
BsaJI CCNNGG 1 cut(s) 731
BsaWI WCCGGW 3 cut(s) 167, 227, 821
Bsc4I CCNNNNNNNGG 5 cut(s) 151, 227, 780, 781, 976
Bse1I ACTGG 2 cut(s) 349, 1107
BseAI TCCGGA 1 cut(s) 227
BseBI CCWGG 1 cut(s) 732
BseDI CCNNGG 1 cut(s) 731
BseLI CCNNNNNNNGG 5 cut(s) 151, 227, 780, 781, 976
BseMII CTCAG 4 cut(s) 438, 445, 783, 977
BseNI ACTGG 2 cut(s) 349, 1107
BseSI GKGCMC 1 cut(s) 760
BseXI GCAGC 2 cut(s) 80, 85
Bsh1236I CGCG 1 cut(s) 356
BshFI GGCC 2 cut(s) 108, 864
BsiHKAI GWGCWC 1 cut(s) 760
BsiHKCI CYCGRG 1 cut(s) 775
BsiSI CCGG 5 cut(s) 130, 168, 228, 822, 1083
BslI CCNNNNNNNGG 5 cut(s) 151, 227, 780, 781, 976
BsmAI GTCTC 6 cut(s) 335, 420, 434, 689, 772, 1114
BsnI GGCC 2 cut(s) 108, 864
Bso31I GGTCTC 3 cut(s) 420, 689, 1114
BsoBI CYCGRG 1 cut(s) 775
Bsp1286I GDGCHC 1 cut(s) 760
Bsp13I TCCGGA 1 cut(s) 227
Bsp143I GATC 4 cut(s) 139, 276, 485, 784
BspACI CCGC 4 cut(s) 81, 105, 307, 1064
BspANI GGCC 2 cut(s) 108, 864
BspCNI CTCAG 4 cut(s) 439, 444, 782, 978
BspEI TCCGGA 1 cut(s) 227
BspFNI CGCG 1 cut(s) 356
BspLI GGNNCC 2 cut(s) 528, 588
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 2 cut(s) 284, 792
BspTNI GGTCTC 3 cut(s) 420, 689, 1114
BsrI ACTGG 2 cut(s) 349, 1107
BssECI CCNNGG 1 cut(s) 731
BssMI GATC 4 cut(s) 139, 276, 485, 784
BssSI CACGAG 1 cut(s) 269
Bst2BI CACGAG 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 732
Bst4CI ACNGT 4 cut(s) 241, 411, 648, 829
BstAPI GCANNNNNTGC 1 cut(s) 98
BstBAI YACGTR 1 cut(s) 1127
BstC8I GCNNGC 6 cut(s) 94, 103, 146, 466, 862, 1064
BstDEI CTNAG 5 cut(s) 431, 447, 769, 986, 1043
BstFNI CGCG 1 cut(s) 356
BstHHI GCGC 3 cut(s) 86, 98, 358
BstKTI GATC 4 cut(s) 142, 279, 488, 787
BstMAI GTCTC 6 cut(s) 335, 420, 434, 689, 772, 1114
BstMBI GATC 4 cut(s) 139, 276, 485, 784
BstMWI GCNNNNNNNGC 3 cut(s) 98, 102, 465
BstNI CCWGG 1 cut(s) 732
BstNSI RCATGY 2 cut(s) 96, 1062
BstPAI GACNNNNGTC 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 730, 1081
BstSLI GKGCMC 1 cut(s) 760
BstUI CGCG 1 cut(s) 356
BstV1I GCAGC 2 cut(s) 80, 85
BstXI CCANNNNNNTGG 1 cut(s) 523
BsuRI GGCC 2 cut(s) 108, 864
BtsI GCAGTG 2 cut(s) 442, 658
BtsIMutI CAGTG 5 cut(s) 407, 442, 658, 1100, 1122
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 6 cut(s) 94, 103, 146, 466, 862, 1064
CfoI GCGC 3 cut(s) 86, 98, 358
Cfr13I GGNCC 2 cut(s) 107, 262
Csp6I GTAC 5 cut(s) 352, 373, 669, 825, 967
CspCI CAANNNNNGTGG 2 cut(s) 254, 289
CviAII CATG 4 cut(s) 93, 788, 1019, 1059
CviQI GTAC 5 cut(s) 352, 373, 669, 825, 967
DdeI CTNAG 5 cut(s) 431, 447, 769, 986, 1043
DpnI GATC 4 cut(s) 141, 278, 487, 786
DpnII GATC 4 cut(s) 139, 276, 485, 784
DrdI GACNNNNNNGTC 1 cut(s) 883
DseDI GACNNNNNNGTC 1 cut(s) 883
Eco147I AGGCCT 1 cut(s) 864
Eco31I GGTCTC 3 cut(s) 420, 689, 1114
Eco47I GGWCC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 310
Eco72I CACGTG 1 cut(s) 1127
Eco88I CYCGRG 1 cut(s) 775
EcoRI GAATTC 1 cut(s) 553
EcoRII CCWGG 1 cut(s) 730
FaeI CATG 4 cut(s) 96, 791, 1022, 1062
FatI CATG 4 cut(s) 92, 787, 1018, 1058
FauI CCCGC 1 cut(s) 1071
Fnu4HI GCNGC 4 cut(s) 69, 82, 99, 106
Fsp4HI GCNGC 4 cut(s) 69, 82, 99, 106
FspBI CTAG 1 cut(s) 666
GlaI GCGC 3 cut(s) 85, 97, 357
GluI GCNGC 4 cut(s) 69, 82, 99, 106
GsuI CTGGAG 1 cut(s) 1124
HaeIII GGCC 2 cut(s) 108, 864
HapII CCGG 5 cut(s) 130, 168, 228, 822, 1083
HhaI GCGC 3 cut(s) 86, 98, 358
Hin1II CATG 4 cut(s) 96, 791, 1022, 1062
Hin6I GCGC 3 cut(s) 84, 96, 356
HinP1I GCGC 3 cut(s) 84, 96, 356
HincII GTYRAC 2 cut(s) 474, 842
HindII GTYRAC 2 cut(s) 474, 842
HinfI GANTC 5 cut(s) 120, 795, 803, 884, 898
HpaII CCGG 5 cut(s) 130, 168, 228, 822, 1083
HphI GGTGA 3 cut(s) 333, 480, 974
Hpy166II GTNNAC 6 cut(s) 341, 375, 474, 644, 758, 842
Hpy188I TCNGA 6 cut(s) 448, 559, 636, 876, 987, 1056
Hpy188III TCNNGA 4 cut(s) 228, 314, 368, 483
Hpy8I GTNNAC 6 cut(s) 341, 375, 474, 644, 758, 842
HpyAV CCTTC 9 cut(s) 49, 65, 355, 374, 388, 501, 577, 774, 970
HpyCH4III ACNGT 4 cut(s) 241, 411, 648, 829
HpyCH4IV ACGT 2 cut(s) 476, 1126
HpyCH4V TGCA 4 cut(s) 189, 297, 758, 1029
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 102, 465
HpyF3I CTNAG 5 cut(s) 431, 447, 769, 986, 1043
HpySE526I ACGT 2 cut(s) 476, 1126
Hsp92II CATG 4 cut(s) 96, 791, 1022, 1062
HspAI GCGC 3 cut(s) 84, 96, 356
Kpn2I TCCGGA 1 cut(s) 227
Kzo9I GATC 4 cut(s) 139, 276, 485, 784
LmnI GCTCC 1 cut(s) 586
Lsp1109I GCAGC 2 cut(s) 80, 85
LweI GCATC 3 cut(s) 95, 258, 306
MaeI CTAG 1 cut(s) 666
MaeII ACGT 2 cut(s) 476, 1126
MaeIII GTNAC 4 cut(s) 254, 437, 829, 1004
MalI GATC 4 cut(s) 141, 278, 487, 786
MboI GATC 4 cut(s) 139, 276, 485, 784
MboII GAAGA 7 cut(s) 25, 34, 37, 40, 43, 216, 292
MfeI CAATTG 1 cut(s) 879
MhlI GDGCHC 1 cut(s) 760
MluCI AATT 7 cut(s) 553, 654, 726, 815, 879, 920, 1024
MlyI GAGTC 2 cut(s) 892, 893
MmeI TCCRAC 2 cut(s) 897, 1079
MnlI CCTC 8 cut(s) 69, 227, 296, 442, 855, 906, 981, 1099
MroI TCCGGA 1 cut(s) 227
MseI TTAA 3 cut(s) 213, 725, 1147
MslI CAYNNNNRTG 1 cut(s) 91
MspA1I CMGCKG 1 cut(s) 105
MspI CCGG 5 cut(s) 130, 168, 228, 822, 1083
MspR9I CCNGG 2 cut(s) 732, 1083
MunI CAATTG 1 cut(s) 879
MvaI CCWGG 1 cut(s) 732
MvnI CGCG 1 cut(s) 356
MwoI GCNNNNNNNGC 3 cut(s) 98, 102, 465
NciI CCSGG 1 cut(s) 1083
NdeII GATC 4 cut(s) 139, 276, 485, 784
NlaIII CATG 4 cut(s) 96, 791, 1022, 1062
NlaIV GGNNCC 2 cut(s) 528, 588
NmeAIII GCCGAG 1 cut(s) 885
NmuCI GTSAC 1 cut(s) 437
NspI RCATGY 2 cut(s) 96, 1062
PaeI GCATGC 1 cut(s) 96
PceI AGGCCT 1 cut(s) 864
PfeI GAWTC 3 cut(s) 120, 795, 803
PkrI GCNGC 4 cut(s) 70, 83, 100, 107
PleI GAGTC 2 cut(s) 892, 892
PmaCI CACGTG 1 cut(s) 1127
PmlI CACGTG 1 cut(s) 1127
PpsI GAGTC 2 cut(s) 892, 892
Ppu21I YACGTR 1 cut(s) 1127
PshAI GACNNNNGTC 1 cut(s) 327
PshBI ATTAAT 1 cut(s) 725
Psp1406I AACGTT 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 730
PspCI CACGTG 1 cut(s) 1127
PspGI CCWGG 1 cut(s) 730
PspN4I GGNNCC 2 cut(s) 528, 588
PspPI GGNCC 2 cut(s) 107, 262
RsaI GTAC 5 cut(s) 353, 374, 670, 826, 968
RsaNI GTAC 5 cut(s) 352, 373, 669, 825, 967
RseI CAYNNNNRTG 1 cut(s) 91
SaqAI TTAA 3 cut(s) 213, 725, 1147
SatI GCNGC 4 cut(s) 69, 82, 99, 106
Sau3AI GATC 4 cut(s) 139, 276, 485, 784
Sau96I GGNCC 2 cut(s) 107, 262
ScaI AGTACT 1 cut(s) 670
SchI GAGTC 2 cut(s) 892, 893
ScrFI CCNGG 2 cut(s) 732, 1083
SduI GDGCHC 1 cut(s) 760
SfaNI GCATC 3 cut(s) 95, 258, 306
SinI GGWCC 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 91
SmlI CTYRAG 1 cut(s) 846
SmoI CTYRAG 1 cut(s) 846
SphI GCATGC 1 cut(s) 96
Sse9I AATT 7 cut(s) 553, 654, 726, 815, 879, 920, 1024
SseBI AGGCCT 1 cut(s) 864
SsiI CCGC 4 cut(s) 81, 105, 307, 1064
SspMI CTAG 1 cut(s) 666
StuI AGGCCT 1 cut(s) 864
StyD4I CCNGG 2 cut(s) 730, 1081
TaaI ACNGT 4 cut(s) 241, 411, 648, 829
TaiI ACGT 2 cut(s) 479, 1129
TaqI TCGA 6 cut(s) 118, 288, 482, 650, 793, 1093
TasI AATT 7 cut(s) 553, 654, 726, 815, 879, 920, 1024
TatI WGTACW 2 cut(s) 372, 668
TauI GCSGC 2 cut(s) 84, 108
TfiI GAWTC 3 cut(s) 120, 795, 803
Tru1I TTAA 3 cut(s) 213, 725, 1147
Tru9I TTAA 3 cut(s) 213, 725, 1147
TscAI CASTG 5 cut(s) 414, 442, 665, 1107, 1122
TseFI GTSAC 1 cut(s) 437
TseI GCWGC 2 cut(s) 68, 98
Tsp45I GTSAC 1 cut(s) 437
TspDTI ATGAA 1 cut(s) 844
TspGWI ACGGA 1 cut(s) 207
TspRI CASTG 5 cut(s) 414, 442, 665, 1107, 1122
VneI GTGCAC 1 cut(s) 756
VpaK11BI GGWCC 1 cut(s) 262
VspI ATTAAT 1 cut(s) 725
XapI RAATTY 2 cut(s) 553, 654
XceI RCATGY 2 cut(s) 96, 1062
XspI CTAG 1 cut(s) 666
ZrmI AGTACT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.