RchiOBHm_Chr7g0194851

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000675
Physical Location & Seq
Forward (+)
12869983 .. 12870780
798 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17425

Sequence Viewer

Length: 798 bp
ATGACTACCTTGGAAATCATCATCACCTTCTCCATCTTGTTTTTCCTTTTTCCGAATCAAACATCAGCAACCTGTCATGAAACAAGATGCAAGGCCAAGGAACCATGGGTACGATTCCCTTTTCAACTACTAAGAGAAGGCCAAGACTTGGATTGTGGCTATGATCGAGGATTTGATCTCTCCTGCAGCAACCACCATAAGCGAACTATCCTCACTCTCCCATCTTCGAGAGACTTCATCGTGAAGGACATCAACTACATCGACCATATCATATGGATCGACGATCCCGGAAGCTGCTTCCCTAAGAGGCTCATGGACCATGACTTCAGTCTTGTGGACTCACCCTTCTCATACTTTTACGGCCTCGAAAGCTACGTGTTCCTCAACTGTTCGTCGACGTCCCGGGAAGAGATACTAGCACCGTCTTCACCAATTGATTGCCTCAGTAGTGAGGACTACAAGGTCATAGCTGTGCAGTCTACTTGGTTCTATGCTGATCTTAATACATCAAGTACTTCATTGAGGCCACTGGCTCAGACATCGTTATCCAGTCTTTGTTCCGTGATCTCCACAGCTATGATTCCACTGTCAGGTTCATTTGACGGGTGGGATCTTAACTTTGGTGTTCGGTTGGCATGGGACATGCCCGATTGTCGTCTATGCGAAGCAAGCGGGAGATTATGTGGGTTTGATGTTGCTACAACTTCGCAAGTTGTTGTGTGCTCTGGACTTTCAAATTCAGGTAATGTTTCAAGAGTAATACATACTACTGCATGCGAGACAATATATACTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

265

Amino Acids

29.7

Weight (kDa)

4.87

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 25 - 95 6.3e-14 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 461
AatII GACGTC 1 cut(s) 401
AccB7I CCANNNNNTGG 1 cut(s) 148
AccI GTMKAC 2 cut(s) 395, 479
AciI CCGC 1 cut(s) 672
AclWI GGATC 3 cut(s) 278, 284, 618
AcsI RAATTY 1 cut(s) 736
AcuI CTGAAG 1 cut(s) 310
AcyI GRCGYC 1 cut(s) 398
AfaI GTAC 2 cut(s) 111, 514
AfiI CCNNNNNNNGG 2 cut(s) 148, 590
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 3 cut(s) 125, 735, 753
AluBI AGCT 4 cut(s) 294, 372, 470, 575
AluI AGCT 4 cut(s) 294, 372, 470, 575
Alw21I GWGCWC 1 cut(s) 725
Alw26I GTCTC 2 cut(s) 225, 773
AlwI GGATC 3 cut(s) 278, 284, 618
Ama87I CYCGRG 1 cut(s) 402
AoxI GGCC 4 cut(s) 93, 139, 361, 524
ApeKI GCWGC 2 cut(s) 186, 294
ApoI RAATTY 1 cut(s) 736
AspS9I GGNCC 1 cut(s) 316
AsuC2I CCSGG 3 cut(s) 288, 403, 404
AsuHPI GGTGA 3 cut(s) 16, 333, 420
AvaI CYCGRG 1 cut(s) 402
AvaII GGWCC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 725
BbvI GCAGC 2 cut(s) 198, 281
BccI CCATC 2 cut(s) 41, 229
BceAI ACGGC 1 cut(s) 376
BcnI CCSGG 3 cut(s) 288, 403, 404
BcoDI GTCTC 2 cut(s) 225, 773
BfaI CTAG 1 cut(s) 416
BfmI CTRYAG 1 cut(s) 184
BisI GCNGC 2 cut(s) 187, 295
BlsI GCNGC 2 cut(s) 188, 296
BmcAI AGTACT 1 cut(s) 514
Bme1390I CCNGG 3 cut(s) 288, 403, 404
Bme18I GGWCC 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 402
BmgT120I GGNCC 1 cut(s) 316
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 3 cut(s) 288, 403, 404
BmsI GCATC 1 cut(s) 77
BoxI GACNNNNGTC 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 417
BpuMI CCSGG 3 cut(s) 288, 403, 404
BsaAI YACGTR 1 cut(s) 376
BsaHI GRCGYC 1 cut(s) 398
BsaJI CCNNGG 4 cut(s) 9, 96, 104, 402
BsaXI ACNNNNNCTCC 2 cut(s) 667, 697
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 590
Bse1I ACTGG 2 cut(s) 534, 549
BseDI CCNNGG 4 cut(s) 9, 96, 104, 402
BseLI CCNNNNNNNGG 2 cut(s) 148, 590
BseMII CTCAG 2 cut(s) 457, 548
BseNI ACTGG 2 cut(s) 534, 549
BseXI GCAGC 2 cut(s) 198, 281
BsgI GTGCAG 1 cut(s) 494
BshFI GGCC 4 cut(s) 95, 141, 363, 526
BsiHKAI GWGCWC 1 cut(s) 725
BsiHKCI CYCGRG 1 cut(s) 402
BsiSI CCGG 2 cut(s) 288, 403
BslFI GGGAC 2 cut(s) 385, 653
BslI CCNNNNNNNGG 2 cut(s) 148, 590
BsmAI GTCTC 2 cut(s) 225, 773
BsmFI GGGAC 2 cut(s) 385, 653
BsnI GGCC 4 cut(s) 95, 141, 363, 526
BsoBI CYCGRG 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 725
Bsp143I GATC 7 cut(s) 163, 175, 276, 283, 496, 564, 610
Bsp19I CCATGG 1 cut(s) 104
BspACI CCGC 1 cut(s) 672
BspANI GGCC 4 cut(s) 95, 141, 363, 526
BspCNI CTCAG 2 cut(s) 456, 547
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 188
BspPI GGATC 3 cut(s) 278, 284, 618
BsrI ACTGG 2 cut(s) 534, 549
BssECI CCNNGG 4 cut(s) 9, 96, 104, 402
BssMI GATC 7 cut(s) 163, 175, 276, 283, 496, 564, 610
BssNI GRCGYC 1 cut(s) 398
BssT1I CCWWGG 3 cut(s) 9, 96, 104
Bst4CI ACNGT 3 cut(s) 389, 423, 588
Bst6I CTCTTC 1 cut(s) 402
BstACI GRCGYC 1 cut(s) 398
BstBAI YACGTR 1 cut(s) 376
BstC8I GCNNGC 2 cut(s) 670, 775
BstDEI CTNAG 4 cut(s) 131, 303, 443, 534
BstDSI CCRYGG 1 cut(s) 104
BstKTI GATC 7 cut(s) 166, 178, 279, 286, 499, 567, 613
BstMAI GTCTC 2 cut(s) 225, 773
BstMBI GATC 7 cut(s) 163, 175, 276, 283, 496, 564, 610
BstMWI GCNNNNNNNGC 2 cut(s) 369, 669
BstNSI RCATGY 2 cut(s) 646, 777
BstPAI GACNNNNGTC 1 cut(s) 327
BstSCI CCNGG 3 cut(s) 286, 401, 402
BstSFI CTRYAG 1 cut(s) 184
BstV1I GCAGC 2 cut(s) 198, 281
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 610
BstYI RGATCY 1 cut(s) 610
BsuRI GGCC 4 cut(s) 95, 141, 363, 526
BtgI CCRYGG 1 cut(s) 104
BtsIMutI CAGTG 2 cut(s) 527, 584
Cac8I GCNNGC 2 cut(s) 670, 775
CciI TCATGA 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 316
Cfr9I CCCGGG 1 cut(s) 402
Csp6I GTAC 2 cut(s) 110, 513
CviAII CATG 7 cut(s) 77, 105, 313, 320, 636, 643, 774
CviQI GTAC 2 cut(s) 110, 513
DdeI CTNAG 4 cut(s) 131, 303, 443, 534
DpnI GATC 7 cut(s) 165, 177, 278, 285, 498, 566, 612
DpnII GATC 7 cut(s) 163, 175, 276, 283, 496, 564, 610
DrdI GACNNNNNNGTC 1 cut(s) 461
DseDI GACNNNNNNGTC 1 cut(s) 461
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco130I CCWWGG 3 cut(s) 9, 96, 104
Eco47I GGWCC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 310
Eco88I CYCGRG 1 cut(s) 402
EcoT14I CCWWGG 3 cut(s) 9, 96, 104
ErhI CCWWGG 3 cut(s) 9, 96, 104
FaeI CATG 7 cut(s) 80, 108, 316, 323, 639, 646, 777
FaqI GGGAC 2 cut(s) 385, 653
FatI CATG 7 cut(s) 76, 104, 312, 319, 635, 642, 773
FauI CCCGC 1 cut(s) 665
FauNDI CATATG 1 cut(s) 272
FblI GTMKAC 2 cut(s) 395, 479
Fnu4HI GCNGC 2 cut(s) 187, 295
Fsp4HI GCNGC 2 cut(s) 187, 295
FspBI CTAG 1 cut(s) 416
GluI GCNGC 2 cut(s) 187, 295
HaeIII GGCC 4 cut(s) 95, 141, 363, 526
HapII CCGG 2 cut(s) 288, 403
Hin1I GRCGYC 1 cut(s) 398
Hin1II CATG 7 cut(s) 80, 108, 316, 323, 639, 646, 777
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 4 cut(s) 55, 114, 338, 580
HpaII CCGG 2 cut(s) 288, 403
HphI GGTGA 3 cut(s) 16, 333, 420
Hpy166II GTNNAC 3 cut(s) 337, 396, 480
Hpy188I TCNGA 2 cut(s) 54, 537
Hpy188III TCNNGA 5 cut(s) 77, 228, 241, 726, 753
Hpy8I GTNNAC 3 cut(s) 337, 396, 480
Hpy99I CGWCG 3 cut(s) 284, 397, 400
HpyAV CCTTC 4 cut(s) 37, 131, 238, 355
HpyCH4III ACNGT 3 cut(s) 389, 423, 588
HpyCH4IV ACGT 2 cut(s) 375, 398
HpyCH4V TGCA 4 cut(s) 90, 186, 475, 773
HpyF10VI GCNNNNNNNGC 2 cut(s) 369, 669
HpyF3I CTNAG 4 cut(s) 131, 303, 443, 534
HpySE526I ACGT 2 cut(s) 375, 398
Hsp92I GRCGYC 1 cut(s) 398
Hsp92II CATG 7 cut(s) 80, 108, 316, 323, 639, 646, 777
Kzo9I GATC 7 cut(s) 163, 175, 276, 283, 496, 564, 610
LpnPI CCDG 9 cut(s) 85, 196, 301, 416, 515, 562, 576, 711, 726
Lsp1109I GCAGC 2 cut(s) 198, 281
LweI GCATC 1 cut(s) 77
MaeI CTAG 1 cut(s) 416
MaeII ACGT 2 cut(s) 375, 398
MalI GATC 7 cut(s) 165, 177, 278, 285, 498, 566, 612
MboI GATC 7 cut(s) 163, 175, 276, 283, 496, 564, 610
MboII GAAGA 3 cut(s) 216, 417, 419
MfeI CAATTG 1 cut(s) 432
MflI RGATCY 1 cut(s) 610
MhlI GDGCHC 1 cut(s) 725
MluCI AATT 2 cut(s) 432, 736
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 8 cut(s) 161, 221, 300, 374, 392, 445, 452, 516
MseI TTAA 3 cut(s) 501, 615, 796
MslI CAYNNNNRTG 2 cut(s) 470, 575
MspI CCGG 2 cut(s) 288, 403
MspR9I CCNGG 3 cut(s) 288, 403, 404
MunI CAATTG 1 cut(s) 432
MwoI GCNNNNNNNGC 2 cut(s) 369, 669
NciI CCSGG 3 cut(s) 288, 403, 404
NcoI CCATGG 1 cut(s) 104
NdeI CATATG 1 cut(s) 272
NdeII GATC 7 cut(s) 163, 175, 276, 283, 496, 564, 610
NlaIII CATG 7 cut(s) 80, 108, 316, 323, 639, 646, 777
NlaIV GGNNCC 1 cut(s) 102
NspI RCATGY 2 cut(s) 646, 777
PaeI GCATGC 1 cut(s) 777
PagI TCATGA 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PfeI GAWTC 3 cut(s) 55, 114, 580
PflMI CCANNNNNTGG 1 cut(s) 148
PfoI TCCNGGA 1 cut(s) 286
PkrI GCNGC 2 cut(s) 188, 296
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Ppu21I YACGTR 1 cut(s) 376
PshAI GACNNNNGTC 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 316
PsrI GAACNNNNNNTAC 2 cut(s) 93, 125
PstI CTGCAG 1 cut(s) 188
PsuI RGATCY 1 cut(s) 610
RsaI GTAC 2 cut(s) 111, 514
RsaNI GTAC 2 cut(s) 110, 513
RseI CAYNNNNRTG 2 cut(s) 470, 575
SalI GTCGAC 1 cut(s) 394
SaqAI TTAA 3 cut(s) 501, 615, 796
SatI GCNGC 2 cut(s) 187, 295
Sau3AI GATC 7 cut(s) 163, 175, 276, 283, 496, 564, 610
Sau96I GGNCC 1 cut(s) 316
ScaI AGTACT 1 cut(s) 514
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 3 cut(s) 288, 403, 404
SduI GDGCHC 1 cut(s) 725
SfaNI GCATC 1 cut(s) 77
SfcI CTRYAG 1 cut(s) 184
SgrDI CGTCGACG 1 cut(s) 394
SinI GGWCC 1 cut(s) 316
SmaI CCCGGG 1 cut(s) 404
SmiMI CAYNNNNRTG 2 cut(s) 470, 575
SphI GCATGC 1 cut(s) 777
Sse9I AATT 2 cut(s) 432, 736
SsiI CCGC 1 cut(s) 672
SspMI CTAG 1 cut(s) 416
StyD4I CCNGG 3 cut(s) 286, 401, 402
StyI CCWWGG 3 cut(s) 9, 96, 104
TaaI ACNGT 3 cut(s) 389, 423, 588
TaiI ACGT 2 cut(s) 378, 401
TaqI TCGA 6 cut(s) 166, 227, 261, 279, 366, 395
TasI AATT 2 cut(s) 432, 736
TatI WGTACW 1 cut(s) 512
TfiI GAWTC 3 cut(s) 55, 114, 580
Tru1I TTAA 3 cut(s) 501, 615, 796
Tru9I TTAA 3 cut(s) 501, 615, 796
TscAI CASTG 2 cut(s) 534, 591
TseI GCWGC 2 cut(s) 186, 294
TspDTI ATGAA 4 cut(s) 93, 226, 507, 585
TspGWI ACGGA 1 cut(s) 550
TspMI CCCGGG 1 cut(s) 402
TspRI CASTG 2 cut(s) 534, 591
Van91I CCANNNNNTGG 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 316
XapI RAATTY 1 cut(s) 736
XceI RCATGY 2 cut(s) 646, 777
XmaI CCCGGG 1 cut(s) 402
XmiI GTMKAC 2 cut(s) 395, 479
XspI CTAG 1 cut(s) 416
ZraI GACGTC 1 cut(s) 399
ZrmI AGTACT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.