Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8453499.1

Orthogroup ID

OG0000675

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1392

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8453499.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 640 bp

atgtggatcaacgacctaaactggtgcatgcacaaaagattccttgacaaagacttcagtcttgtaggcacgcctttccatttctggcatagcctggaaaactatacctacttcaagtgcccgtccaaagttgtggttattgggtcttttgcaccaatctcttgccttggcgattacaattacaacgtcattgctgtcccgtcgagttggtcaacgactgagaaaccagctcctcagtctctttgtcgtgcaatttccacagctttgcttccggcgagttttgggtggggggagtttgctgtaaagttgacttggggcgttcccgattgtcgttcttgtgaagcaaatggtagagtttgcaagcctaatgtgacaagttcccacattgagtgctcaactgatggtatcccaatatccgcaaagaccggcatagcaattggcgtgttgattccggctgggctgttgtgcattgttggatacgcactctatgttgcgggcaggagggatcatgatggtcgggtccaagaaacaaacaggcgtggtcagcttcaagaactcattgaagccaatggacaacctcaagtagttacagcgggtcttgatgctcagactattgagtcatatttgaagactcaacttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind zf-RING_2

Protein Analysis

213

Amino Acids

23.41

Weight (kDa)

6.93

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000675)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04540 FvH4_5g04550 FvH4_5g04551 FvH4_5g04552 FvH4_5g04554 FvH4_5g29040
malus_domestica	MD06G1106600.v1.1 MD14G1128600.v1.1 MD14G1128700.v1.1
prunus_persica	Prupe.5G118700_v2.0.a1 Prupe.5G118800_v2.0.a1 Prupe.5G119000_v2.0.a1 Prupe.5G119300_v2.0.a1 Prupe.5G119500_v2.0.a1 Prupe.5G119600_v2.0.a1 Prupe.5G119700_v2.0.a1 Prupe.5G119800_v2.0.a1 Prupe.5G119900_v2.0.a1
pyrus_communis	pycom06g10070 pycom06g10090
rosa_chinensis	RchiOBHm_Chr7g0194821 RchiOBHm_Chr7g0194841 RchiOBHm_Chr7g0194851 RchiOBHm_Chr7g0194861 RchiOBHm_Chr7g0194871 RchiOBHm_Chr7g0226371
rosa_laevigata	RLG00000001745 RLG00000004159 RLG00000004160 RLG00000004162 RLG00000004163 RLG00000004166 RLG00000013439
rosa_multiflora	Rmu_co8140360.1_g000001 Rmu_co8197174.1_g000001 Rmu_co8260763.1_g000001 Rmu_co8287607.1_g000001 Rmu_co8453499.1_g000001 Rmu_sc0011834.1_g000004 Rmu_sc0017428.1_g000003 Rmu_sc0040407.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260910 Rroxscaffold_3G00260920
rosa_rugosa	Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0236700
rosa_samantha	Rh7AG146400 Rh7AG146500 Rh7AG146600 Rh7AG383700 Rh7BG146300 Rh7BG146400 Rh7BG146500 Rh7BG146600 Rh7BG146900 Rh7BG147100 Rh7BG147200 Rh7BG147300 Rh7BG370800 Rh7CG150400 Rh7CG150500 Rh7CG150600 Rh7CG403300 Rh7DG147600 Rh7DG147700 Rh7DG147800 Rh7DG382100 Rh7DG482500
rosa_wichuraiana	Rw7G012490 Rw7G012500 Rw7G012510 Rw7G032160 Rw7G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	616
AciI	CCGC	3 cut(s)	417, 494, 593
AclWI	GGATC	2 cut(s)	14, 513
AcuI	CTGAAG	1 cut(s)	40
AgsI	TTSAA	4 cut(s)	115, 551, 563, 628
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	3 cut(s)	230, 263, 547
AluI	AGCT	3 cut(s)	230, 263, 547
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	2 cut(s)	14, 513
AspS9I	GGNCC	1 cut(s)	520
AvaII	GGWCC	1 cut(s)	520
BaeGI	GKGCMC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	635
Bbv12I	GWGCWC	1 cut(s)	395
BccI	CCATC	2 cut(s)	395, 506
BciT130I	CCWGG	1 cut(s)	95
BciVI	GTATCC	2 cut(s)	416, 470
BcoDI	GTCTC	1 cut(s)	243
BfuI	GTATCC	2 cut(s)	416, 470
Bme1390I	CCNGG	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	1 cut(s)	521
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	592
BoxI	GACNNNNGTC	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	635
BpuEI	CTTGAG	1 cut(s)	564
BsaJI	CCNNGG	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	166
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	3 cut(s)	210, 248, 620
BseNI	ACTGG	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	222
BseSI	GKGCMC	1 cut(s)	122
BseYI	CCCAGC	1 cut(s)	455
BsiHKAI	GWGCWC	1 cut(s)	395
BsiSI	CCGG	3 cut(s)	272, 426, 452
BslFI	GGGAC	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	182
Bsp1286I	GDGCHC	2 cut(s)	122, 395
Bsp143I	GATC	2 cut(s)	6, 505
BspACI	CCGC	3 cut(s)	417, 494, 593
BspCNI	CTCAG	3 cut(s)	211, 247, 619
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	521
BspPI	GGATC	2 cut(s)	14, 513
BsrDI	GCAATG	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	2 cut(s)	6, 505
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	95
BstC8I	GCNNGC	4 cut(s)	29, 71, 362, 496
BstDEI	CTNAG	3 cut(s)	219, 234, 606
BstKTI	GATC	2 cut(s)	9, 508
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	2 cut(s)	6, 505
BstMWI	GCNNNNNNNGC	1 cut(s)	544
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	31
BstPAI	GACNNNNGTC	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	122
BstV2I	GAAGAC	1 cut(s)	635
BstXI	CCANNNNNNTGG	1 cut(s)	133
BsuI	GTATCC	2 cut(s)	416, 470
Cac8I	GCNNGC	4 cut(s)	29, 71, 362, 496
CciI	TCATGA	1 cut(s)	508
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	520
CviAII	CATG	2 cut(s)	28, 509
CviJI	RGCY	8 cut(s)	93, 230, 263, 364, 455, 460, 547, 566
CviKI_1	RGCY	8 cut(s)	93, 230, 263, 364, 455, 460, 547, 566
DdeI	CTNAG	3 cut(s)	219, 234, 606
DpnI	GATC	2 cut(s)	8, 507
DpnII	GATC	2 cut(s)	6, 505
DrdI	GACNNNNNNGTC	1 cut(s)	616
DseDI	GACNNNNNNGTC	1 cut(s)	616
Eco130I	CCWWGG	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	2 cut(s)	31, 512
FaiI	YATR	7 cut(s)	29, 90, 105, 431, 489, 510, 622
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	2 cut(s)	27, 508
FauI	CCCGC	2 cut(s)	487, 586
GsaI	CCCAGC	1 cut(s)	459
HapII	CCGG	3 cut(s)	272, 426, 452
Hin1II	CATG	2 cut(s)	31, 512
HincII	GTYRAC	2 cut(s)	213, 309
HindII	GTYRAC	2 cut(s)	213, 309
HinfI	GANTC	4 cut(s)	39, 448, 617, 631
HpaII	CCGG	3 cut(s)	272, 426, 452
Hpy166II	GTNNAC	2 cut(s)	213, 309
Hpy188I	TCNGA	1 cut(s)	609
Hpy188III	TCNNGA	4 cut(s)	323, 509, 551, 599
Hpy8I	GTNNAC	2 cut(s)	213, 309
Hpy99I	CGWCG	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	6 cut(s)	27, 31, 152, 251, 360, 468
HpyF10VI	GCNNNNNNNGC	1 cut(s)	544
HpyF3I	CTNAG	3 cut(s)	219, 234, 606
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	31, 512
Kzo9I	GATC	2 cut(s)	6, 505
LmnI	GCTCC	1 cut(s)	235
LweI	GCATC	1 cut(s)	592
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	370, 586
MalI	GATC	2 cut(s)	8, 507
MboI	GATC	2 cut(s)	6, 505
MboII	GAAGA	1 cut(s)	640
MfeI	CAATTG	1 cut(s)	435
MhlI	GDGCHC	2 cut(s)	122, 395
MluCI	AATT	3 cut(s)	178, 252, 435
MlyI	GAGTC	2 cut(s)	625, 626
MmeI	TCCRAC	1 cut(s)	454
MnlI	CCTC	3 cut(s)	243, 495, 588
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	3 cut(s)	272, 426, 452
MspR9I	CCNGG	1 cut(s)	95
MunI	CAATTG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	544
NdeII	GATC	2 cut(s)	6, 505
NlaIII	CATG	2 cut(s)	31, 512
NlaIV	GGNNCC	1 cut(s)	521
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	1 cut(s)	31
PaeI	GCATGC	1 cut(s)	31
PagI	TCATGA	1 cut(s)	508
PfeI	GAWTC	2 cut(s)	39, 448
PleI	GAGTC	2 cut(s)	625, 625
PpsI	GAGTC	2 cut(s)	625, 625
PshAI	GACNNNNGTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	93
PspFI	CCCAGC	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	521
PspPI	GGNCC	1 cut(s)	520
Sau3AI	GATC	2 cut(s)	6, 505
Sau96I	GGNCC	1 cut(s)	520
SchI	GAGTC	2 cut(s)	625, 626
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	2 cut(s)	122, 395
SetI	ASST	7 cut(s)	18, 110, 189, 232, 265, 549, 580
SfaNI	GCATC	1 cut(s)	592
SinI	GGWCC	1 cut(s)	520
SmlI	CTYRAG	1 cut(s)	579
SmoI	CTYRAG	1 cut(s)	579
SphI	GCATGC	1 cut(s)	31
Sse9I	AATT	3 cut(s)	178, 252, 435
SsiI	CCGC	3 cut(s)	417, 494, 593
StyD4I	CCNGG	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	166
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	203
TasI	AATT	3 cut(s)	178, 252, 435
TfiI	GAWTC	2 cut(s)	39, 448
TseFI	GTSAC	1 cut(s)	370
Tsp45I	GTSAC	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	520
XceI	RCATGY	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.