RchiOBHm_Chr7g0194871

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000675
Physical Location & Seq
Forward (+)
12878600 .. 12879460
861 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17427

Sequence Viewer

Length: 714 bp
ATGTATCATTCCATCACTTGCCTCAGCAGTGACAACTACAAGGTCATTGCTTTGCCAACGAGGTCATGGAGGTCGCCTCACTCTCTTTGTAACATGATTTCGATAGCTATGGTCCCGATCATAAATTATGAGTGGCTTGACACTGACTTTGGTGTGAGGTTGACATGGGGCGCGCCTGATTGTTGTTCTTGTGAATCGAGTGGTCGAGTTTATGGGTTTAAGAATGTTTCCAGTTTGCAACTTGACTGCTCTACGCCAACTAGTGGGTTTTCAAGTCTCTCAAATGCCGAAAAGTTCCTGTTACTAATAAGCGTGAGAGTTCCAGGGCTAGTGTGCATCACTATGTTCGCACTTTATATTTACATCTTAATCAGGGACCTTGGTCTCATCAATGAGCCCATCACAGAATTATCCAGTGTAACCATTCCACAGATTCATGTCGTTATAACAGGCCTTAATGATCTAACCATTGAATCATATCTGAAGACTCAACTTGGCGAGAAATGGGAATTTCCAAGTCCCGAGGACAGCACTTGCCCAATATGTTTATGCAAGTACCAACCCAAGGAAACTATAAGGACAATACCTGAATGCAATCATCATTTTCATGCCAATTGCATTGATGAATGGCTCAGAAAGAATCCTACGTGCCCAGTTTGTCGAAAAGTTCCGCAGAAGGATAACAAAACAAGTCTCTCCCCAATTGAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

237

Amino Acids

26.7

Weight (kDa)

6.06

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 178 - 221 1.2e-14 Ring finger domain
zf-rbx1 PF12678 178 - 221 5.4e-09 RING-H2 zinc finger domain
zf-RING_11 PF17123 179 - 207 1.5e-07 RING-like zinc finger
zf-C3HC4_2 PF13923 179 - 220 4.4e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 179 - 220 1.8e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 446
AccB7I CCANNNNNTGG 1 cut(s) 263
AccII CGCG 1 cut(s) 173
AciI CCGC 1 cut(s) 671
AcsI RAATTY 1 cut(s) 509
AcuI CTGAAG 1 cut(s) 503
AfaI GTAC 1 cut(s) 557
AfiI CCNNNNNNNGG 2 cut(s) 263, 565
AgsI TTSAA 2 cut(s) 273, 473
AhlI ACTAGT 1 cut(s) 260
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Alw26I GTCTC 4 cut(s) 281, 389, 698, 701
Ama87I CYCGRG 1 cut(s) 521
AoxI GGCC 1 cut(s) 451
ApoI RAATTY 1 cut(s) 509
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AscI GGCGCGCC 1 cut(s) 171
AspLEI GCGC 2 cut(s) 173, 175
AspS9I GGNCC 2 cut(s) 112, 376
AvaI CYCGRG 1 cut(s) 521
AvaII GGWCC 2 cut(s) 112, 376
BaeGI GKGCMC 1 cut(s) 653
BanII GRGCYC 1 cut(s) 399
BbsI GAAGAC 1 cut(s) 491
BbvCI CCTCAGC 1 cut(s) 23
BccI CCATC 2 cut(s) 20, 407
BciT130I CCWGG 1 cut(s) 324
BcoDI GTCTC 4 cut(s) 281, 389, 698, 701
BcuI ACTAGT 1 cut(s) 260
BfaI CTAG 2 cut(s) 261, 329
Bme1390I CCNGG 1 cut(s) 324
Bme18I GGWCC 2 cut(s) 112, 376
BmeT110I CYCGRG 1 cut(s) 521
BmgT120I GGNCC 2 cut(s) 112, 376
BmiI GGNNCC 2 cut(s) 114, 377
BmrFI CCNGG 1 cut(s) 324
BmrI ACTGGG 1 cut(s) 647
BmsI GCATC 1 cut(s) 345
BmuI ACTGGG 1 cut(s) 647
BoxI GACNNNNGTC 1 cut(s) 381
BpiI GAAGAC 1 cut(s) 491
BplI GAGNNNNNCTC 2 cut(s) 61, 93
Bpu10I CCTNAGC 1 cut(s) 23
BsaAI YACGTR 1 cut(s) 648
BsaI GGTCTC 1 cut(s) 389
BsaJI CCNNGG 4 cut(s) 323, 379, 522, 564
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 565
Bse1I ACTGG 3 cut(s) 231, 414, 653
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 4 cut(s) 323, 379, 522, 564
BseLI CCNNNNNNNGG 2 cut(s) 263, 565
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 37, 646
BseNI ACTGG 3 cut(s) 231, 414, 653
BsePI GCGCGC 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 653
Bsh1236I CGCG 1 cut(s) 173
BshFI GGCC 1 cut(s) 453
BsiHKCI CYCGRG 1 cut(s) 521
BslFI GGGAC 3 cut(s) 98, 389, 504
BslI CCNNNNNNNGG 2 cut(s) 263, 565
BsmAI GTCTC 4 cut(s) 281, 389, 698, 701
BsmFI GGGAC 3 cut(s) 98, 389, 504
BsmI GAATGC 1 cut(s) 596
BsnI GGCC 1 cut(s) 453
Bso31I GGTCTC 1 cut(s) 389
BsoBI CYCGRG 1 cut(s) 521
Bsp1286I GDGCHC 2 cut(s) 399, 653
Bsp143I GATC 2 cut(s) 117, 460
BspACI CCGC 1 cut(s) 671
BspANI GGCC 1 cut(s) 453
BspCNI CTCAG 2 cut(s) 36, 645
BspFNI CGCG 1 cut(s) 173
BspLI GGNNCC 2 cut(s) 114, 377
BspTNI GGTCTC 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 3 cut(s) 231, 414, 653
BssECI CCNNGG 4 cut(s) 323, 379, 522, 564
BssHII GCGCGC 1 cut(s) 171
BssMI GATC 2 cut(s) 117, 460
BssT1I CCWWGG 2 cut(s) 379, 564
Bst2UI CCWGG 1 cut(s) 324
BstBAI YACGTR 1 cut(s) 648
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 2 cut(s) 23, 632
BstFNI CGCG 1 cut(s) 173
BstHHI GCGC 2 cut(s) 173, 175
BstKTI GATC 2 cut(s) 120, 463
BstMAI GTCTC 4 cut(s) 281, 389, 698, 701
BstMBI GATC 2 cut(s) 117, 460
BstNI CCWGG 1 cut(s) 324
BstPAI GACNNNNGTC 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 322
BstSLI GKGCMC 1 cut(s) 653
BstUI CGCG 1 cut(s) 173
BstV2I GAAGAC 1 cut(s) 491
BsuRI GGCC 1 cut(s) 453
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 3 cut(s) 34, 141, 421
Cac8I GCNNGC 1 cut(s) 173
CfoI GCGC 2 cut(s) 173, 175
Cfr13I GGNCC 2 cut(s) 112, 376
Csp6I GTAC 1 cut(s) 556
CviAII CATG 6 cut(s) 66, 94, 165, 437, 608, 711
CviJI RGCY 6 cut(s) 107, 136, 328, 397, 453, 631
CviKI_1 RGCY 6 cut(s) 107, 136, 328, 397, 453, 631
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 2 cut(s) 23, 632
DpnI GATC 2 cut(s) 119, 462
DpnII GATC 2 cut(s) 117, 460
Eco130I CCWWGG 2 cut(s) 379, 564
Eco147I AGGCCT 1 cut(s) 453
Eco24I GRGCYC 1 cut(s) 399
Eco31I GGTCTC 1 cut(s) 389
Eco47I GGWCC 2 cut(s) 112, 376
Eco57I CTGAAG 1 cut(s) 503
Eco88I CYCGRG 1 cut(s) 521
EcoO109I RGGNCCY 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 322
EcoT14I CCWWGG 2 cut(s) 379, 564
EcoT38I GRGCYC 1 cut(s) 399
ErhI CCWWGG 2 cut(s) 379, 564
FaeI CATG 6 cut(s) 69, 97, 168, 440, 611, 714
FaqI GGGAC 3 cut(s) 98, 389, 504
FatI CATG 6 cut(s) 65, 93, 164, 436, 607, 710
FriOI GRGCYC 1 cut(s) 399
FspBI CTAG 2 cut(s) 261, 329
GlaI GCGC 2 cut(s) 172, 174
HaeIII GGCC 1 cut(s) 453
HhaI GCGC 2 cut(s) 173, 175
Hin1II CATG 6 cut(s) 69, 97, 168, 440, 611, 714
Hin6I GCGC 2 cut(s) 171, 173
HinP1I GCGC 2 cut(s) 171, 173
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HinfI GANTC 5 cut(s) 194, 433, 473, 487, 640
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 2 cut(s) 483, 635
Hpy188III TCNNGA 2 cut(s) 115, 521
Hpy8I GTNNAC 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 670
HpyCH4IV ACGT 1 cut(s) 647
HpyCH4V TGCA 5 cut(s) 238, 336, 552, 594, 618
HpyF3I CTNAG 2 cut(s) 23, 632
HpySE526I ACGT 1 cut(s) 647
Hsp92II CATG 6 cut(s) 69, 97, 168, 440, 611, 714
HspAI GCGC 2 cut(s) 171, 173
Kzo9I GATC 2 cut(s) 117, 460
LweI GCATC 1 cut(s) 345
MaeI CTAG 2 cut(s) 261, 329
MaeII ACGT 1 cut(s) 647
MaeIII GTNAC 4 cut(s) 29, 89, 300, 418
MalI GATC 2 cut(s) 119, 462
MboI GATC 2 cut(s) 117, 460
MboII GAAGA 1 cut(s) 496
MfeI CAATTG 2 cut(s) 613, 702
MhlI GDGCHC 2 cut(s) 399, 653
MluCI AATT 5 cut(s) 124, 407, 509, 613, 702
MlyI GAGTC 1 cut(s) 481
MnlI CCTC 6 cut(s) 32, 54, 63, 87, 150, 517
MseI TTAA 3 cut(s) 219, 368, 456
MslI CAYNNNNRTG 2 cut(s) 341, 606
MspR9I CCNGG 1 cut(s) 324
MunI CAATTG 2 cut(s) 613, 702
Mva1269I GAATGC 1 cut(s) 596
MvaI CCWGG 1 cut(s) 324
MvnI CGCG 1 cut(s) 173
NdeII GATC 2 cut(s) 117, 460
NlaIII CATG 6 cut(s) 69, 97, 168, 440, 611, 714
NlaIV GGNNCC 2 cut(s) 114, 377
NmuCI GTSAC 1 cut(s) 29
PalAI GGCGCGCC 1 cut(s) 171
PauI GCGCGC 1 cut(s) 171
PceI AGGCCT 1 cut(s) 453
PctI GAATGC 1 cut(s) 596
PfeI GAWTC 4 cut(s) 194, 433, 473, 640
PflMI CCANNNNNTGG 1 cut(s) 263
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
Ppu21I YACGTR 1 cut(s) 648
PpuMI RGGWCCY 1 cut(s) 376
PshAI GACNNNNGTC 1 cut(s) 381
PsiI TTATAA 1 cut(s) 446
Psp5II RGGWCCY 1 cut(s) 376
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 2 cut(s) 114, 377
PspPI GGNCC 2 cut(s) 112, 376
PspPPI RGGWCCY 1 cut(s) 376
PteI GCGCGC 1 cut(s) 171
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
RseI CAYNNNNRTG 2 cut(s) 341, 606
SaqAI TTAA 3 cut(s) 219, 368, 456
Sau3AI GATC 2 cut(s) 117, 460
Sau96I GGNCC 2 cut(s) 112, 376
SchI GAGTC 1 cut(s) 481
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 2 cut(s) 399, 653
SetI ASST 8 cut(s) 45, 65, 74, 109, 161, 381, 589, 650
SfaNI GCATC 1 cut(s) 345
SgsI GGCGCGCC 1 cut(s) 171
SinI GGWCC 2 cut(s) 112, 376
SmiMI CAYNNNNRTG 2 cut(s) 341, 606
SpeI ACTAGT 1 cut(s) 260
Sse9I AATT 5 cut(s) 124, 407, 509, 613, 702
SseBI AGGCCT 1 cut(s) 453
SsiI CCGC 1 cut(s) 671
SspMI CTAG 2 cut(s) 261, 329
StuI AGGCCT 1 cut(s) 453
StyD4I CCNGG 1 cut(s) 322
StyI CCWWGG 2 cut(s) 379, 564
TaiI ACGT 1 cut(s) 650
TaqI TCGA 4 cut(s) 101, 197, 205, 661
TasI AATT 5 cut(s) 124, 407, 509, 613, 702
TfiI GAWTC 4 cut(s) 194, 433, 473, 640
Tru1I TTAA 3 cut(s) 219, 368, 456
Tru9I TTAA 3 cut(s) 219, 368, 456
TscAI CASTG 3 cut(s) 34, 148, 421
TseFI GTSAC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 3 cut(s) 425, 596, 639
TspRI CASTG 3 cut(s) 34, 148, 421
Van91I CCANNNNNTGG 1 cut(s) 263
VpaK11BI GGWCC 2 cut(s) 112, 376
XapI RAATTY 1 cut(s) 509
XcmI CCANNNNNNNNNTGG 1 cut(s) 63
XspI CTAG 2 cut(s) 261, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.