Rh7BG147100

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000675
Physical Location & Seq
Forward (+)
10949050 .. 10949775
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG147100.1

Sequence Viewer

Length: 726 bp
ATGGCTACCTTAGAATTCTTGACCTTGTTCTTCTTCCTCTTCCTTCCGCACATATCTGCTAAGAAATGCCATGAGTTGAGATGCAGGACTTATGACACCCCACAGGTTAGATTTCCATTCCGGTTAAGAGAGCGCCAACCACCACGTTGTGGATATTCCAGCAACTTTGATCTCTCATGCAACCAACAAAAACAAACCATTCTCACTCTCCCATCATCTTCGGGGGACTTCACCGTCGAGAGCATCAGCTACACCGACCAAAGTATCTGGATCAACGACCAGAACAAGTGCATCCCCAAGCGGATACTTGACAACGACTTCCGTCTTGCAGGCTCACCCTTCCAATTTGAGCATGGCCTGGAAAACTATACCTTCTGCAACTGCTCGCCCCAAGCTCCGCTAGTACGGCTTTATATATATCATCCCATCACTTGCCTCAGCAGTGACAACTACAAGGTCATTGCTTTGCCAACGAGGTCATGGAGGTCGCCTCACTCTCTTTGTAACATGATTTCAACAGCTATGGTCCCGATCGTAAATTATGAGTGGCTTGACACTGACTTTGGTGTGAGGTTGACATGGGGCGAGCCTGATTGTCGTTCTTGTGAATCGAGTGGTCGAGTTTGTGGGTTTAAGAATGATTCCAGTTTGCAACTTGACTGCTCTACGCAAACTAATGGTACAATATTTATTTTAGTGATTGATGTTCTATTTTATCTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

241

Amino Acids

27.78

Weight (kDa)

6.5

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 23 - 93 2.7e-17 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AccB7I CCANNNNNTGG 1 cut(s) 149
AciI CCGC 3 cut(s) 47, 301, 398
AclWI GGATC 1 cut(s) 278
AcsI RAATTY 1 cut(s) 14
AdeI CACNNNGTG 1 cut(s) 149
AfaI GTAC 2 cut(s) 405, 682
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 516
AjnI CCWGG 1 cut(s) 357
AluBI AGCT 3 cut(s) 249, 395, 521
AluI AGCT 3 cut(s) 249, 395, 521
AlwI GGATC 1 cut(s) 278
AoxI GGCC 1 cut(s) 355
ApoI RAATTY 1 cut(s) 14
ArsI GACNNNNNNTTYG 2 cut(s) 545, 577
AspLEI GCGC 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 526
AsuHPI GGTGA 2 cut(s) 223, 327
AvaII GGWCC 1 cut(s) 526
BaeI ACNNNNGTAYC 2 cut(s) 247, 280
BbvCI CCTCAGC 1 cut(s) 437
BccI CCATC 2 cut(s) 220, 434
BceAI ACGGC 1 cut(s) 422
BciT130I CCWGG 1 cut(s) 359
BciVI GTATCC 1 cut(s) 297
BfaI CTAG 1 cut(s) 401
BfoI RGCGCY 1 cut(s) 136
BfuI GTATCC 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 359
Bme18I GGWCC 1 cut(s) 526
BmgT120I GGNCC 1 cut(s) 526
BmiI GGNNCC 1 cut(s) 528
BmrFI CCNGG 1 cut(s) 359
BmsI GCATC 3 cut(s) 71, 252, 300
BoxI GACNNNNGTC 1 cut(s) 321
BplI GAGNNNNNCTC 2 cut(s) 475, 507
Bpu10I CCTNAGC 1 cut(s) 437
BsaWI WCCGGW 1 cut(s) 120
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 645
Bse3DI GCAATG 1 cut(s) 459
BseBI CCWGG 1 cut(s) 359
BseGI GGATG 2 cut(s) 291, 421
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 1 cut(s) 451
BseNI ACTGG 1 cut(s) 645
Bsh1285I CGRYCG 1 cut(s) 534
BshFI GGCC 1 cut(s) 357
BsiEI CGRYCG 1 cut(s) 534
BsiSI CCGG 1 cut(s) 121
BslFI GGGAC 2 cut(s) 239, 512
BslI CCNNNNNNNGG 1 cut(s) 149
BsmFI GGGAC 2 cut(s) 239, 512
BsnI GGCC 1 cut(s) 357
Bsp143I GATC 3 cut(s) 169, 270, 531
BspACI CCGC 3 cut(s) 47, 301, 398
BspANI GGCC 1 cut(s) 357
BspCNI CTCAG 1 cut(s) 450
BspLI GGNNCC 1 cut(s) 528
BspPI GGATC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 459
BsrI ACTGG 1 cut(s) 645
BssMI GATC 3 cut(s) 169, 270, 531
Bst2UI CCWGG 1 cut(s) 359
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 44
BstC8I GCNNGC 3 cut(s) 331, 386, 587
BstDEI CTNAG 3 cut(s) 10, 60, 437
BstF5I GGATG 2 cut(s) 291, 421
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 3 cut(s) 172, 273, 534
BstMBI GATC 3 cut(s) 169, 270, 531
BstMCI CGRYCG 1 cut(s) 534
BstMWI GCNNNNNNNGC 1 cut(s) 406
BstNI CCWGG 1 cut(s) 359
BstPAI GACNNNNGTC 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 357
BsuI GTATCC 1 cut(s) 297
BsuRI GGCC 1 cut(s) 357
BtsCI GGATG 2 cut(s) 291, 421
BtsI GCAGTG 1 cut(s) 448
BtsIMutI CAGTG 2 cut(s) 448, 555
Cac8I GCNNGC 3 cut(s) 331, 386, 587
CfoI GCGC 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 526
Csp6I GTAC 2 cut(s) 404, 681
CviAII CATG 6 cut(s) 71, 177, 353, 480, 508, 579
CviJI RGCY 9 cut(s) 5, 249, 333, 357, 395, 409, 521, 550, 589
CviKI_1 RGCY 9 cut(s) 5, 249, 333, 357, 395, 409, 521, 550, 589
CviQI GTAC 2 cut(s) 404, 681
DdeI CTNAG 3 cut(s) 10, 60, 437
DpnI GATC 3 cut(s) 171, 272, 533
DpnII GATC 3 cut(s) 169, 270, 531
DraIII CACNNNGTG 1 cut(s) 149
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 526
EcoRI GAATTC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 357
FaeI CATG 6 cut(s) 74, 180, 356, 483, 511, 582
FaqI GGGAC 2 cut(s) 239, 512
FatI CATG 6 cut(s) 70, 176, 352, 479, 507, 578
FokI GGATG 2 cut(s) 278, 408
FspBI CTAG 1 cut(s) 401
GlaI GCGC 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 1 cut(s) 357
HapII CCGG 1 cut(s) 121
HhaI GCGC 1 cut(s) 135
Hin1II CATG 6 cut(s) 74, 180, 356, 483, 511, 582
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HinfI GANTC 2 cut(s) 608, 641
HpaII CCGG 1 cut(s) 121
HphI GGTGA 2 cut(s) 223, 327
Hpy166II GTNNAC 1 cut(s) 576
Hpy188I TCNGA 1 cut(s) 720
Hpy188III TCNNGA 4 cut(s) 19, 238, 268, 529
Hpy8I GTNNAC 1 cut(s) 576
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 3 cut(s) 53, 349, 382
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 6 cut(s) 84, 180, 291, 329, 378, 652
HpyF10VI GCNNNNNNNGC 1 cut(s) 406
HpyF3I CTNAG 3 cut(s) 10, 60, 437
HpySE526I ACGT 1 cut(s) 145
Hsp92II CATG 6 cut(s) 74, 180, 356, 483, 511, 582
HspAI GCGC 1 cut(s) 133
Kzo9I GATC 3 cut(s) 169, 270, 531
LmnI GCTCC 1 cut(s) 400
LweI GCATC 3 cut(s) 71, 252, 300
MaeI CTAG 1 cut(s) 401
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 2 cut(s) 443, 503
MalI GATC 3 cut(s) 171, 272, 533
MboI GATC 3 cut(s) 169, 270, 531
MboII GAAGA 4 cut(s) 22, 25, 31, 210
MluCI AATT 3 cut(s) 14, 344, 538
MnlI CCTC 6 cut(s) 47, 446, 468, 477, 501, 564
MseI TTAA 2 cut(s) 125, 633
MspI CCGG 1 cut(s) 121
MspR9I CCNGG 1 cut(s) 359
MvaI CCWGG 1 cut(s) 359
MwoI GCNNNNNNNGC 1 cut(s) 406
NdeII GATC 3 cut(s) 169, 270, 531
NlaIII CATG 6 cut(s) 74, 180, 356, 483, 511, 582
NlaIV GGNNCC 1 cut(s) 528
NmuCI GTSAC 1 cut(s) 443
PfeI GAWTC 2 cut(s) 608, 641
PflMI CCANNNNNTGG 1 cut(s) 149
Ple19I CGATCG 1 cut(s) 534
PshAI GACNNNNGTC 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 357
PspGI CCWGG 1 cut(s) 357
PspN4I GGNNCC 1 cut(s) 528
PspPI GGNCC 1 cut(s) 526
PvuI CGATCG 1 cut(s) 534
RsaI GTAC 2 cut(s) 405, 682
RsaNI GTAC 2 cut(s) 404, 681
SaqAI TTAA 2 cut(s) 125, 633
Sau3AI GATC 3 cut(s) 169, 270, 531
Sau96I GGNCC 1 cut(s) 526
ScrFI CCNGG 1 cut(s) 359
SfaNI GCATC 3 cut(s) 71, 252, 300
SinI GGWCC 1 cut(s) 526
Sse9I AATT 3 cut(s) 14, 344, 538
SsiI CCGC 3 cut(s) 47, 301, 398
SspI AATATT 1 cut(s) 687
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 1 cut(s) 357
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 1 cut(s) 148
TaqI TCGA 3 cut(s) 237, 611, 619
TasI AATT 3 cut(s) 14, 344, 538
TfiI GAWTC 2 cut(s) 608, 641
Tru1I TTAA 2 cut(s) 125, 633
Tru9I TTAA 2 cut(s) 125, 633
TscAI CASTG 2 cut(s) 448, 562
TseFI GTSAC 1 cut(s) 443
Tsp45I GTSAC 1 cut(s) 443
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 2 cut(s) 448, 562
Van91I CCANNNNNTGG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 526
XapI RAATTY 1 cut(s) 14
XcmI CCANNNNNNNNNTGG 2 cut(s) 350, 477
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.