Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040407.1

Orthogroup ID

OG0000675

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2258

Gene Structure 2257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040407.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 506 bp

atgaagtcgagcaagatgctggcttggatcgaacagacgacgtcgtttaccgagcgggatggagttgttgcctctcagaacttccagcttcgccattgttcgccgcggccgctgccgttgtcgtcaacaaaggtctcaaggacgaggaagctatcgatttctaagcttcacgaacaaatagataatccagatgcagagaatttgagagattccgacggcccaactgttcgattcccattctggctaagagatcaccactcctcgcattgcgggtggttagggtttaatctctcatgcaacaaccaaaagcaaaccattcttactttcccgtcttccggggatttcatcgtcgacaacattaattacttgcaccaaatcctaacgatcaaagaccccaataactgcctcatcaagcggttccttgatgatgaaatggatctcttgcctttacctttctcctaccttcatgactttgcaaactacacattcttcaattgctcgcccaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind zf-RING_2

Protein Analysis

168

Amino Acids

19.42

Weight (kDa)

6.64

Isoelectric Point (pI)

53.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000675)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04540 FvH4_5g04550 FvH4_5g04551 FvH4_5g04552 FvH4_5g04554 FvH4_5g29040
malus_domestica	MD06G1106600.v1.1 MD14G1128600.v1.1 MD14G1128700.v1.1
prunus_persica	Prupe.5G118700_v2.0.a1 Prupe.5G118800_v2.0.a1 Prupe.5G119000_v2.0.a1 Prupe.5G119300_v2.0.a1 Prupe.5G119500_v2.0.a1 Prupe.5G119600_v2.0.a1 Prupe.5G119700_v2.0.a1 Prupe.5G119800_v2.0.a1 Prupe.5G119900_v2.0.a1
pyrus_communis	pycom06g10070 pycom06g10090
rosa_chinensis	RchiOBHm_Chr7g0194821 RchiOBHm_Chr7g0194841 RchiOBHm_Chr7g0194851 RchiOBHm_Chr7g0194861 RchiOBHm_Chr7g0194871 RchiOBHm_Chr7g0226371
rosa_laevigata	RLG00000001745 RLG00000004159 RLG00000004160 RLG00000004162 RLG00000004163 RLG00000004166 RLG00000013439
rosa_multiflora	Rmu_co8140360.1_g000001 Rmu_co8197174.1_g000001 Rmu_co8260763.1_g000001 Rmu_co8287607.1_g000001 Rmu_co8453499.1_g000001 Rmu_sc0011834.1_g000004 Rmu_sc0017428.1_g000003 Rmu_sc0040407.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260910 Rroxscaffold_3G00260920
rosa_rugosa	Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0236700
rosa_samantha	Rh7AG146400 Rh7AG146500 Rh7AG146600 Rh7AG383700 Rh7BG146300 Rh7BG146400 Rh7BG146500 Rh7BG146600 Rh7BG146900 Rh7BG147100 Rh7BG147200 Rh7BG147300 Rh7BG370800 Rh7CG150400 Rh7CG150500 Rh7CG150600 Rh7CG403300 Rh7DG147600 Rh7DG147700 Rh7DG147800 Rh7DG382100 Rh7DG482500
rosa_wichuraiana	Rw7G012490 Rw7G012500 Rw7G012510 Rw7G032160 Rw7G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	44
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	1 cut(s)	106
AciI	CCGC	6 cut(s)	55, 104, 106, 110, 270, 415
AclWI	GGATC	2 cut(s)	35, 444
AcoI	YGGCCR	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	199
AcyI	GRCGYC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	1 cut(s)	493
AluBI	AGCT	3 cut(s)	88, 151, 166
AluI	AGCT	3 cut(s)	88, 151, 166
Alw26I	GTCTC	1 cut(s)	139
AlwI	GGATC	2 cut(s)	35, 444
AoxI	GGCC	2 cut(s)	107, 217
ApeKI	GCWGC	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	199
AseI	ATTAAT	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	218
AsuC2I	CCSGG	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	99
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	2 cut(s)	100, 232
BcgI	CGANNNNNNTGC	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	139
BisI	GCNGC	4 cut(s)	104, 107, 110, 113
BlsI	GCNGC	4 cut(s)	105, 108, 111, 114
Bme1390I	CCNGG	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	419
BmrFI	CCNGG	1 cut(s)	337
BmsI	GCATC	2 cut(s)	6, 181
BpiI	GAAGAC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	337
Bsa29I	ATCGAT	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	2 cut(s)	104, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse3DI	GCAATG	1 cut(s)	265
BseCI	ATCGAT	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	104, 336
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	89
BseRI	GAGGAG	1 cut(s)	250
BseX3I	CGGCCG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	106
Bsh1285I	CGRYCG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	109, 219
BshVI	ATCGAT	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	109, 219
Bso31I	GGTCTC	1 cut(s)	139
Bsp143I	GATC	4 cut(s)	27, 250, 384, 436
BspACI	CCGC	6 cut(s)	55, 104, 106, 110, 270, 415
BspANI	GGCC	2 cut(s)	109, 219
BspCNI	CTCAG	1 cut(s)	88
BspDI	ATCGAT	1 cut(s)	155
BspFNI	CGCG	1 cut(s)	106
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	1 cut(s)	419
BspPI	GGATC	2 cut(s)	35, 444
BspTNI	GGTCTC	1 cut(s)	139
BsrBI	CCGCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	265
BssECI	CCNNGG	2 cut(s)	104, 336
BssMI	GATC	4 cut(s)	27, 250, 384, 436
BssNI	GRCGYC	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	226
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	21, 500
BstDEI	CTNAG	3 cut(s)	75, 162, 245
BstDSI	CCRYGG	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	64
BstFNI	CGCG	1 cut(s)	106
BstKTI	GATC	4 cut(s)	30, 253, 387, 439
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	4 cut(s)	27, 250, 384, 436
BstMCI	CGRYCG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 112
BstSCI	CCNGG	1 cut(s)	335
BstUI	CGCG	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BstZI	CGGCCG	1 cut(s)	107
Bsu15I	ATCGAT	1 cut(s)	155
BsuRI	GGCC	2 cut(s)	109, 219
BsuTUI	ATCGAT	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	21, 500
CciI	TCATGA	1 cut(s)	466
CciNI	GCGGCCGC	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	218
Cfr42I	CCGCGG	1 cut(s)	107
ClaI	ATCGAT	1 cut(s)	155
CviAII	CATG	2 cut(s)	294, 467
CviJI	RGCY	7 cut(s)	23, 88, 109, 151, 166, 219, 244
CviKI_1	RGCY	7 cut(s)	23, 88, 109, 151, 166, 219, 244
DdeI	CTNAG	3 cut(s)	75, 162, 245
DpnI	GATC	4 cut(s)	29, 252, 386, 438
DpnII	GATC	4 cut(s)	27, 250, 384, 436
EaeI	YGGCCR	1 cut(s)	107
EagI	CGGCCG	1 cut(s)	107
EclXI	CGGCCG	1 cut(s)	107
Eco31I	GGTCTC	1 cut(s)	139
Eco52I	CGGCCG	1 cut(s)	107
FaeI	CATG	2 cut(s)	297, 470
FaiI	YATR	2 cut(s)	295, 468
FatI	CATG	2 cut(s)	293, 466
FauI	CCCGC	2 cut(s)	48, 263
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	4 cut(s)	104, 107, 110, 113
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	4 cut(s)	104, 107, 110, 113
GluI	GCNGC	4 cut(s)	104, 107, 110, 113
HaeIII	GGCC	2 cut(s)	109, 219
HapII	CCGG	1 cut(s)	336
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	297, 470
HincII	GTYRAC	2 cut(s)	126, 352
HindII	GTYRAC	2 cut(s)	126, 352
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	2 cut(s)	209, 231
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	3 cut(s)	48, 126, 352
Hpy188I	TCNGA	2 cut(s)	78, 214
Hpy188III	TCNNGA	3 cut(s)	170, 188, 467
Hpy8I	GTNNAC	3 cut(s)	48, 126, 352
Hpy99I	CGWCG	4 cut(s)	43, 46, 218, 353
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	4 cut(s)	194, 297, 370, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 112
HpyF3I	CTNAG	3 cut(s)	75, 162, 245
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	297, 470
KspI	CCGCGG	1 cut(s)	107
Kzo9I	GATC	4 cut(s)	27, 250, 384, 436
LpnPI	CCDG	5 cut(s)	5, 98, 201, 226, 349
Lsp1109I	GCAGC	1 cut(s)	99
LweI	GCATC	2 cut(s)	6, 181
MaeII	ACGT	1 cut(s)	41
MalI	GATC	4 cut(s)	29, 252, 386, 438
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	4 cut(s)	27, 250, 384, 436
MboII	GAAGA	2 cut(s)	324, 481
MfeI	CAATTG	1 cut(s)	493
MflI	RGATCY	1 cut(s)	436
MluCI	AATT	3 cut(s)	199, 361, 493
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	4 cut(s)	82, 138, 271, 416
MseI	TTAA	2 cut(s)	285, 360
MspA1I	CMGCKG	2 cut(s)	106, 112
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	1 cut(s)	337
MunI	CAATTG	1 cut(s)	493
MvnI	CGCG	1 cut(s)	106
MwoI	GCNNNNNNNGC	2 cut(s)	109, 112
NciI	CCSGG	1 cut(s)	337
NdeII	GATC	4 cut(s)	27, 250, 384, 436
NlaIII	CATG	2 cut(s)	297, 470
NlaIV	GGNNCC	1 cut(s)	419
NotI	GCGGCCGC	1 cut(s)	107
PagI	TCATGA	1 cut(s)	466
PfeI	GAWTC	2 cut(s)	209, 231
PflFI	GACNNNGTC	1 cut(s)	40
PkrI	GCNGC	4 cut(s)	105, 108, 111, 114
PshBI	ATTAAT	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	419
PspPI	GGNCC	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	436
PsyI	GACNNNGTC	1 cut(s)	40
SacII	CCGCGG	1 cut(s)	107
SalI	GTCGAC	1 cut(s)	350
SaqAI	TTAA	2 cut(s)	285, 360
SatI	GCNGC	4 cut(s)	104, 107, 110, 113
Sau3AI	GATC	4 cut(s)	27, 250, 384, 436
Sau96I	GGNCC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	337
SetI	ASST	7 cut(s)	44, 90, 135, 153, 168, 454, 465
SfaNI	GCATC	2 cut(s)	6, 181
Sfr303I	CCGCGG	1 cut(s)	107
SgrBI	CCGCGG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
Sse9I	AATT	3 cut(s)	199, 361, 493
SsiI	CCGC	6 cut(s)	55, 104, 106, 110, 270, 415
StyD4I	CCNGG	1 cut(s)	335
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	5 cut(s)	8, 30, 155, 229, 351
TasI	AATT	3 cut(s)	199, 361, 493
TauI	GCSGC	3 cut(s)	106, 109, 112
TfiI	GAWTC	2 cut(s)	209, 231
Tru1I	TTAA	2 cut(s)	285, 360
Tru9I	TTAA	2 cut(s)	285, 360
TseI	GCWGC	1 cut(s)	112
TspDTI	ATGAA	4 cut(s)	17, 334, 444, 455
Tth111I	GACNNNGTC	1 cut(s)	40
VspI	ATTAAT	1 cut(s)	360
XapI	RAATTY	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	351
ZraI	GACGTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.