Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000675

Physical Location & Seq

Genomic Coordinates Reverse (-)

56807505 .. 56808303

Gene Structure 799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004163

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGATTCCAATAGAACAGAAGAATTATCATCCAGCTGAACCATCAAATCCATCTGAGTGGGCGGACATTAACTTTGGTGTTCAGCTGCGGTGGGACGAGCCTGATTGTCGTTATTGTGAGTCAGTTAATAAAGCTTGTGGGGTTGTTCAGACGGGTACAGAATGTCCGGAAGTCGGGTGCCAAATTAGCTCTTCAAGAGCTGCAAAGATTGCCACAGTGATAGGGGTGGTAATGTCAGGGATATTGTGGTTGGTTGGGCTTGCATTGAGACTGACAAGGAATAATAGTCGTGAACATTCTACTGCAGAGTTGTCGATTTTAACTATTGATGAACAACTTCCGGTGGGCGTAATGGGGGGCCTTGATCATGCAACGATCGATTCATATCCAAAGACTCAACTCGGTGAGAGTCGGGAATTGCCCTACTCCGGTGACAACACCTGTCCAATATGTTTAGGAGAGTATCAGGCCAAGGAAACAGTAAGGACTATACCCGAATGCAAACATTATTTCCATGCTAATTGTGTAGACAAGTGGCTTAGAAGGAACCCAACGTGCCCACTTTGTCGAAATCCACCGGAAGGAGGACGAGATAAGCCATTGATTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind zf-RING_2

Protein Analysis

204

Amino Acids

22.51

Weight (kDa)

5.56

Isoelectric Point (pI)

55.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	145 - 190	7.7e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	146 - 190	2.9e-15	Ring finger domain
zf-C3HC4_2	PF13923	148 - 189	7.6e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	148 - 176	1e-08	RING-like zinc finger
zf-C3HC4	PF00097	148 - 189	6.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	148 - 187	5.5e-06	RING-type zinc-finger
zf-RING_5	PF14634	148 - 190	2.7e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000675)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04540 FvH4_5g04550 FvH4_5g04551 FvH4_5g04552 FvH4_5g04554 FvH4_5g29040
malus_domestica	MD06G1106600.v1.1 MD14G1128600.v1.1 MD14G1128700.v1.1
prunus_persica	Prupe.5G118700_v2.0.a1 Prupe.5G118800_v2.0.a1 Prupe.5G119000_v2.0.a1 Prupe.5G119300_v2.0.a1 Prupe.5G119500_v2.0.a1 Prupe.5G119600_v2.0.a1 Prupe.5G119700_v2.0.a1 Prupe.5G119800_v2.0.a1 Prupe.5G119900_v2.0.a1
pyrus_communis	pycom06g10070 pycom06g10090
rosa_chinensis	RchiOBHm_Chr7g0194821 RchiOBHm_Chr7g0194841 RchiOBHm_Chr7g0194851 RchiOBHm_Chr7g0194861 RchiOBHm_Chr7g0194871 RchiOBHm_Chr7g0226371
rosa_laevigata	RLG00000001745 RLG00000004159 RLG00000004160 RLG00000004162 RLG00000004163 RLG00000004166 RLG00000013439
rosa_multiflora	Rmu_co8140360.1_g000001 Rmu_co8197174.1_g000001 Rmu_co8260763.1_g000001 Rmu_co8287607.1_g000001 Rmu_co8453499.1_g000001 Rmu_sc0011834.1_g000004 Rmu_sc0017428.1_g000003 Rmu_sc0040407.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260910 Rroxscaffold_3G00260920
rosa_rugosa	Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0236700
rosa_samantha	Rh7AG146400 Rh7AG146500 Rh7AG146600 Rh7AG383700 Rh7BG146300 Rh7BG146400 Rh7BG146500 Rh7BG146600 Rh7BG146900 Rh7BG147100 Rh7BG147200 Rh7BG147300 Rh7BG370800 Rh7CG150400 Rh7CG150500 Rh7CG150600 Rh7CG403300 Rh7DG147600 Rh7DG147700 Rh7DG147800 Rh7DG382100 Rh7DG482500
rosa_wichuraiana	Rw7G012490 Rw7G012500 Rw7G012510 Rw7G032160 Rw7G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	177
AccI	GTMKAC	1 cut(s)	528
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	2 cut(s)	62, 88
AfaI	GTAC	1 cut(s)	157
AfiI	CCNNNNNNNGG	4 cut(s)	173, 428, 581, 584
AgsI	TTSAA	1 cut(s)	195
AluBI	AGCT	5 cut(s)	35, 85, 134, 189, 200
AluI	AGCT	5 cut(s)	35, 85, 134, 189, 200
Alw26I	GTCTC	1 cut(s)	262
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	2 cut(s)	358, 468
ApeKI	GCWGC	2 cut(s)	85, 200
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AseI	ATTAAT	1 cut(s)	606
Asp700I	GAANNNNTTC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	2 cut(s)	416, 443
BaeGI	GKGCMC	1 cut(s)	560
BanI	GGYRCC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	72, 187
BccI	CCATC	2 cut(s)	49, 58
BcgI	CGANNNNNNTGC	2 cut(s)	294, 328
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	262
BfmI	CTRYAG	1 cut(s)	303
BisI	GCNGC	2 cut(s)	86, 201
BlsI	GCNGC	2 cut(s)	87, 202
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	3 cut(s)	179, 359, 548
Bsa29I	ATCGAT	1 cut(s)	378
BsaBI	GATNNNNATC	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	471
BsaWI	WCCGGW	4 cut(s)	166, 340, 428, 577
Bsc4I	CCNNNNNNNGG	4 cut(s)	173, 428, 581, 584
Bse8I	GATNNNNATC	1 cut(s)	384
BseAI	TCCGGA	1 cut(s)	166
BseCI	ATCGAT	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	1 cut(s)	28
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	4 cut(s)	173, 428, 581, 584
BseMII	CTCAG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	560
BseXI	GCAGC	2 cut(s)	72, 187
Bsh1285I	CGRYCG	1 cut(s)	378
BshFI	GGCC	2 cut(s)	360, 470
BshNI	GGYRCC	1 cut(s)	177
BshVI	ATCGAT	1 cut(s)	378
BsiEI	CGRYCG	1 cut(s)	378
BsiSI	CCGG	4 cut(s)	167, 341, 429, 578
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	4 cut(s)	173, 428, 581, 584
BsmAI	GTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	503
BsnI	GGCC	2 cut(s)	360, 470
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	364, 375
BspACI	CCGC	2 cut(s)	62, 88
BspANI	GGCC	2 cut(s)	360, 470
BspCNI	CTCAG	1 cut(s)	46
BspDI	ATCGAT	1 cut(s)	378
BspEI	TCCGGA	1 cut(s)	166
BspLI	GGNNCC	3 cut(s)	179, 359, 548
BspMAI	CTGCAG	1 cut(s)	307
BspQI	GCTCTTC	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	2 cut(s)	364, 375
BssT1I	CCWWGG	1 cut(s)	471
Bst4CI	ACNGT	2 cut(s)	217, 481
Bst6I	CTCTTC	1 cut(s)	196
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	2 cut(s)	54, 539
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	367, 378
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	2 cut(s)	364, 375
BstMCI	CGRYCG	1 cut(s)	378
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 209
BstSFI	CTRYAG	1 cut(s)	303
BstSLI	GKGCMC	1 cut(s)	560
BstV1I	GCAGC	2 cut(s)	72, 187
BstXI	CCANNNNNNTGG	1 cut(s)	57
Bsu15I	ATCGAT	1 cut(s)	378
BsuRI	GGCC	2 cut(s)	360, 470
BsuTUI	ATCGAT	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	358
ClaI	ATCGAT	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	2 cut(s)	368, 515
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	2 cut(s)	54, 539
DpnI	GATC	2 cut(s)	366, 377
DpnII	GATC	2 cut(s)	364, 375
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	471
EcoO109I	RGGNCCY	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	2 cut(s)	371, 518
FaiI	YATR	5 cut(s)	369, 385, 451, 491, 516
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	2 cut(s)	367, 514
FbaI	TGATCA	1 cut(s)	364
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	2 cut(s)	86, 201
FokI	GGATG	1 cut(s)	15
Fsp4HI	GCNGC	2 cut(s)	86, 201
GluI	GCNGC	2 cut(s)	86, 201
HaeIII	GGCC	2 cut(s)	360, 470
HapII	CCGG	4 cut(s)	167, 341, 429, 578
Hin1II	CATG	2 cut(s)	371, 518
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	5 cut(s)	4, 119, 380, 394, 409
HpaII	CCGG	4 cut(s)	167, 341, 429, 578
HphI	GGTGA	2 cut(s)	416, 443
Hpy166II	GTNNAC	2 cut(s)	293, 529
Hpy188I	TCNGA	2 cut(s)	55, 150
Hpy188III	TCNNGA	4 cut(s)	167, 195, 290, 413
Hpy8I	GTNNAC	2 cut(s)	293, 529
HpyAV	CCTTC	2 cut(s)	537, 575
HpyCH4III	ACNGT	2 cut(s)	217, 481
HpyCH4IV	ACGT	1 cut(s)	554
HpyCH4V	TGCA	5 cut(s)	203, 263, 305, 371, 501
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 209
HpyF3I	CTNAG	2 cut(s)	54, 539
HpySE526I	ACGT	1 cut(s)	554
Hsp92II	CATG	2 cut(s)	371, 518
Kpn2I	TCCGGA	1 cut(s)	166
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	364, 375
LguI	GCTCTTC	1 cut(s)	196
LpnPI	CCDG	9 cut(s)	45, 114, 180, 222, 354, 442, 452, 454, 591
Lsp1109I	GCAGC	2 cut(s)	72, 187
MaeII	ACGT	1 cut(s)	554
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	2 cut(s)	366, 377
MboI	GATC	2 cut(s)	364, 375
MboII	GAAGA	2 cut(s)	31, 183
MhlI	GDGCHC	1 cut(s)	560
MluCI	AATT	5 cut(s)	22, 183, 416, 520, 607
MlyI	GAGTC	3 cut(s)	128, 388, 418
MnlI	CCTC	1 cut(s)	578
MroI	TCCGGA	1 cut(s)	166
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	4 cut(s)	69, 126, 320, 606
MslI	CAYNNNNRTG	1 cut(s)	55
MspA1I	CMGCKG	2 cut(s)	35, 85
MspI	CCGG	4 cut(s)	167, 341, 429, 578
Mva1269I	GAATGC	1 cut(s)	503
MwoI	GCNNNNNNNGC	2 cut(s)	186, 209
NdeII	GATC	2 cut(s)	364, 375
NlaIII	CATG	2 cut(s)	371, 518
NlaIV	GGNNCC	3 cut(s)	179, 359, 548
NmuCI	GTSAC	1 cut(s)	431
PciSI	GCTCTTC	1 cut(s)	196
PctI	GAATGC	1 cut(s)	503
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	4, 380
PkrI	GCNGC	2 cut(s)	87, 202
Ple19I	CGATCG	1 cut(s)	378
PleI	GAGTC	3 cut(s)	127, 388, 417
PpsI	GAGTC	3 cut(s)	127, 388, 417
PshBI	ATTAAT	1 cut(s)	606
PspN4I	GGNNCC	3 cut(s)	179, 359, 548
PspPI	GGNCC	1 cut(s)	358
PstI	CTGCAG	1 cut(s)	307
PvuI	CGATCG	1 cut(s)	378
PvuII	CAGCTG	2 cut(s)	35, 85
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	55
SapI	GCTCTTC	1 cut(s)	196
SaqAI	TTAA	4 cut(s)	69, 126, 320, 606
SatI	GCNGC	2 cut(s)	86, 201
Sau3AI	GATC	2 cut(s)	364, 375
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	3 cut(s)	128, 388, 418
SduI	GDGCHC	1 cut(s)	560
SetI	ASST	7 cut(s)	37, 87, 136, 191, 202, 443, 557
SfcI	CTRYAG	1 cut(s)	303
SmiMI	CAYNNNNRTG	1 cut(s)	55
Sse9I	AATT	5 cut(s)	22, 183, 416, 520, 607
SsiI	CCGC	2 cut(s)	62, 88
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	217, 481
TaiI	ACGT	1 cut(s)	557
TaqI	TCGA	3 cut(s)	314, 378, 568
TasI	AATT	5 cut(s)	22, 183, 416, 520, 607
TfiI	GAWTC	2 cut(s)	4, 380
Tru1I	TTAA	4 cut(s)	69, 126, 320, 606
Tru9I	TTAA	4 cut(s)	69, 126, 320, 606
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	431
TseI	GCWGC	2 cut(s)	85, 200
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	2 cut(s)	345, 372
TspRI	CASTG	1 cut(s)	222
VspI	ATTAAT	1 cut(s)	606
XmiI	GTMKAC	1 cut(s)	528
XmnI	GAANNNNTTC	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.