Rh7BG146900

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000675
Physical Location & Seq
Forward (+)
10927824 .. 10936411
8588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG146900.1

Sequence Viewer

Length: 867 bp
ATGTACGTGGTGGTTCATCATGCTATGGGACCGATTCGATTCCCTTTTAGGCTAAGATACCGCCAACCACTAAATGGTGGGTATTCCATTCATTTTGACCTCTCATGCGACACACAACAACACACCATTCTCACCCTCCCATCTTCAGGAGACTTCGAGGTCAAGAGCATCAGTTACAGTGACCAAACCTTCTGGATCAATGACCTAAACTGGTGCATGCACAAACCGTTCCTTGACAAAGAATTCAGTCTTGTAGGGGCGTCCTTCCATTTCTGGCATCGCCTGGAAAACTATACCTACTTCAAGTGCCCGTCCAAAGTTGTGGCTATTGGGCCATTTAAACCAATCTCTTGCCTTGGCGATTACAATTACAACGTCATTGCCGTCCCGTCAAGTTGGTCAACGACTGAGAACCCACCTCCTCAGTCTCTTTGTCGTGCAATTTCCACAACTTTGCTTCCGTCGGCGAGTTTTGAGTGGGGGGAGTTCTTTGCTGTAAGGTTGACTTGGGGCGTTCCCAATTGTAGTTCTTGTGAAGCAACTAATAGAGTTTGTGGGCTTAATGTCACAAGTTCGCAAATTGAGTGCTCTAGTTCAACGGATGTTAACGCCATAGCAATTGGCGTGTTAATCCCTGCAGGGCTGGTGTGTATTGTTGGTTACGCGCTCTATGTTTCGTGCACGAGGAGGGACGATGGTCAGCCCCAAGAAACAAATAGGCGTGCTCGGCTTCATGAACTCATCGCAGAATTATCCACTGTAGCCAATGGACAAACTCAAGTAATCACAGCGGGTCTTGATTCTCAAACTATTGAGTCATATCTGAAGACTCAACTTGGTGATCAGAGTTTAGAATTAATTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

288

Amino Acids

32.11

Weight (kDa)

5.88

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 12 - 68 4.6e-12 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AccB7I CCANNNNNTGG 1 cut(s) 74
AccII CGCG 1 cut(s) 665
AciI CCGC 2 cut(s) 61, 791
AclWI GGATC 1 cut(s) 203
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 2 cut(s) 129, 845
AcyI GRCGYC 1 cut(s) 260
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 74, 146
AgsI TTSAA 2 cut(s) 304, 597
AjnI CCWGG 1 cut(s) 282
Alw21I GWGCWC 3 cut(s) 590, 683, 727
Alw26I GTCTC 2 cut(s) 144, 432
Alw44I GTGCAC 1 cut(s) 679
AlwI GGATC 1 cut(s) 203
AoxI GGCC 1 cut(s) 332
ApaLI GTGCAC 1 cut(s) 679
ApoI RAATTY 1 cut(s) 242
AseI ATTAAT 1 cut(s) 857
AspLEI GCGC 1 cut(s) 667
AspS9I GGNCC 2 cut(s) 29, 332
AsuHPI GGTGA 2 cut(s) 124, 851
AvaII GGWCC 1 cut(s) 29
BaeGI GKGCMC 2 cut(s) 311, 683
BauI CACGAG 1 cut(s) 682
BbsI GAAGAC 1 cut(s) 833
Bbv12I GWGCWC 3 cut(s) 590, 683, 727
BccI CCATC 2 cut(s) 148, 689
BceAI ACGGC 1 cut(s) 368
BciT130I CCWGG 1 cut(s) 284
BclI TGATCA 1 cut(s) 841
BcoDI GTCTC 2 cut(s) 144, 432
BfaI CTAG 1 cut(s) 591
BfmI CTRYAG 2 cut(s) 636, 759
Bme1390I CCNGG 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 29
BmgT120I GGNCC 2 cut(s) 29, 332
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 284
BmsI GCATC 2 cut(s) 177, 286
BoxI GACNNNNGTC 1 cut(s) 696
BpiI GAAGAC 1 cut(s) 833
BpuEI CTTGAG 1 cut(s) 762
BsaAI YACGTR 1 cut(s) 7
BsaHI GRCGYC 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 146
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 378
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 607
BseLI CCNNNNNNNGG 2 cut(s) 74, 146
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 2 cut(s) 399, 437
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 2 cut(s) 411, 700
BseSI GKGCMC 2 cut(s) 311, 683
Bsh1236I CGCG 1 cut(s) 665
BshFI GGCC 1 cut(s) 334
BsiHKAI GWGCWC 3 cut(s) 590, 683, 727
BslFI GGGAC 3 cut(s) 42, 371, 704
BslI CCNNNNNNNGG 2 cut(s) 74, 146
BsmAI GTCTC 2 cut(s) 144, 432
BsmFI GGGAC 3 cut(s) 42, 371, 704
BsnI GGCC 1 cut(s) 334
Bsp1286I GDGCHC 4 cut(s) 311, 590, 683, 727
Bsp143I GATC 2 cut(s) 195, 841
BspACI CCGC 2 cut(s) 61, 791
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 2 cut(s) 400, 436
BspFNI CGCG 1 cut(s) 665
BspHI TCATGA 1 cut(s) 733
BspLI GGNNCC 1 cut(s) 30
BspMAI CTGCAG 1 cut(s) 640
BspPI GGATC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 378
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 2 cut(s) 195, 841
BssNI GRCGYC 1 cut(s) 260
BssSI CACGAG 1 cut(s) 682
BssT1I CCWWGG 1 cut(s) 355
Bst2BI CACGAG 1 cut(s) 682
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 3 cut(s) 179, 228, 760
BstACI GRCGYC 1 cut(s) 260
BstBAI YACGTR 1 cut(s) 7
BstC8I GCNNGC 2 cut(s) 218, 723
BstDEI CTNAG 3 cut(s) 53, 408, 423
BstF5I GGATG 1 cut(s) 607
BstFNI CGCG 1 cut(s) 665
BstHHI GCGC 1 cut(s) 667
BstKTI GATC 2 cut(s) 198, 844
BstMAI GTCTC 2 cut(s) 144, 432
BstMBI GATC 2 cut(s) 195, 841
BstMWI GCNNNNNNNGC 1 cut(s) 727
BstNI CCWGG 1 cut(s) 284
BstNSI RCATGY 1 cut(s) 220
BstPAI GACNNNNGTC 1 cut(s) 696
BstSCI CCNGG 1 cut(s) 282
BstSFI CTRYAG 2 cut(s) 636, 759
BstSLI GKGCMC 2 cut(s) 311, 683
BstUI CGCG 1 cut(s) 665
BstV2I GAAGAC 1 cut(s) 833
BstXI CCANNNNNNTGG 1 cut(s) 322
BsuRI GGCC 1 cut(s) 334
BtgZI GCGATG 2 cut(s) 263, 727
BtsCI GGATG 1 cut(s) 607
BtsIMutI CAGTG 2 cut(s) 184, 756
Cac8I GCNNGC 2 cut(s) 218, 723
CciI TCATGA 1 cut(s) 733
CfoI GCGC 1 cut(s) 667
Cfr13I GGNCC 2 cut(s) 29, 332
CseI GACGC 1 cut(s) 249
Csp6I GTAC 1 cut(s) 4
CviAII CATG 4 cut(s) 20, 105, 217, 734
CviJI RGCY 8 cut(s) 52, 326, 334, 559, 643, 703, 730, 764
CviKI_1 RGCY 8 cut(s) 52, 326, 334, 559, 643, 703, 730, 764
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 3 cut(s) 53, 408, 423
DpnI GATC 2 cut(s) 197, 843
DpnII GATC 2 cut(s) 195, 841
DraI TTTAAA 1 cut(s) 340
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 29
Eco57I CTGAAG 2 cut(s) 129, 845
EcoRI GAATTC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 4 cut(s) 23, 108, 220, 737
FaiI YATR 9 cut(s) 21, 26, 106, 218, 294, 614, 672, 735, 820
FalI AAGNNNNNCTT 2 cut(s) 490, 522
FaqI GGGAC 3 cut(s) 42, 371, 704
FatI CATG 4 cut(s) 19, 104, 216, 733
FauI CCCGC 1 cut(s) 784
FbaI TGATCA 1 cut(s) 841
FokI GGATG 1 cut(s) 614
FspBI CTAG 1 cut(s) 591
GlaI GCGC 1 cut(s) 666
HaeIII GGCC 1 cut(s) 334
HgaI GACGC 1 cut(s) 249
HhaI GCGC 1 cut(s) 667
Hin1I GRCGYC 1 cut(s) 260
Hin1II CATG 4 cut(s) 23, 108, 220, 737
Hin6I GCGC 1 cut(s) 665
HinP1I GCGC 1 cut(s) 665
HincII GTYRAC 3 cut(s) 402, 504, 607
HindII GTYRAC 3 cut(s) 402, 504, 607
HinfI GANTC 5 cut(s) 34, 39, 800, 815, 829
HpaI GTTAAC 1 cut(s) 607
HphI GGTGA 2 cut(s) 124, 851
Hpy166II GTNNAC 4 cut(s) 402, 504, 607, 681
Hpy188I TCNGA 2 cut(s) 825, 846
Hpy188III TCNNGA 5 cut(s) 147, 163, 193, 734, 797
Hpy8I GTNNAC 4 cut(s) 402, 504, 607, 681
Hpy99I CGWCG 1 cut(s) 466
HpyAV CCTTC 2 cut(s) 199, 274
HpyCH4III ACNGT 3 cut(s) 179, 228, 760
HpyCH4IV ACGT 2 cut(s) 6, 375
HpyCH4V TGCA 5 cut(s) 216, 220, 440, 638, 681
HpyF10VI GCNNNNNNNGC 1 cut(s) 727
HpyF3I CTNAG 3 cut(s) 53, 408, 423
HpySE526I ACGT 2 cut(s) 6, 375
Hsp92I GRCGYC 1 cut(s) 260
Hsp92II CATG 4 cut(s) 23, 108, 220, 737
HspAI GCGC 1 cut(s) 665
Ksp22I TGATCA 1 cut(s) 841
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 2 cut(s) 195, 841
LpnPI CCDG 9 cut(s) 132, 178, 196, 259, 269, 296, 624, 629, 648
LweI GCATC 2 cut(s) 177, 286
MaeI CTAG 1 cut(s) 591
MaeII ACGT 2 cut(s) 6, 375
MaeIII GTNAC 4 cut(s) 173, 179, 565, 659
MalI GATC 2 cut(s) 197, 843
MboI GATC 2 cut(s) 195, 841
MboII GAAGA 2 cut(s) 135, 838
MfeI CAATTG 2 cut(s) 520, 618
MhlI GDGCHC 4 cut(s) 311, 590, 683, 727
MluCI AATT 9 cut(s) 242, 367, 441, 520, 579, 618, 749, 854, 858
MlyI GAGTC 2 cut(s) 823, 824
MnlI CCTC 7 cut(s) 110, 146, 151, 429, 432, 678, 681
MseI TTAA 5 cut(s) 339, 561, 606, 629, 857
MspA1I CMGCKG 1 cut(s) 791
MspR9I CCNGG 1 cut(s) 284
MunI CAATTG 2 cut(s) 520, 618
MvaI CCWGG 1 cut(s) 284
MvnI CGCG 1 cut(s) 665
MwoI GCNNNNNNNGC 1 cut(s) 727
NdeII GATC 2 cut(s) 195, 841
NlaIII CATG 4 cut(s) 23, 108, 220, 737
NlaIV GGNNCC 1 cut(s) 30
NmeAIII GCCGAG 1 cut(s) 706
NmuCI GTSAC 2 cut(s) 179, 565
NspI RCATGY 1 cut(s) 220
PaeI GCATGC 1 cut(s) 220
PagI TCATGA 1 cut(s) 733
PcsI WCGNNNNNNNCGW 1 cut(s) 381
PfeI GAWTC 3 cut(s) 34, 39, 800
PflMI CCANNNNNTGG 1 cut(s) 74
PleI GAGTC 2 cut(s) 823, 823
PpsI GAGTC 2 cut(s) 823, 823
Ppu21I YACGTR 1 cut(s) 7
PshAI GACNNNNGTC 1 cut(s) 696
PshBI ATTAAT 1 cut(s) 857
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 2 cut(s) 29, 332
PstI CTGCAG 1 cut(s) 640
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 5 cut(s) 339, 561, 606, 629, 857
Sau3AI GATC 2 cut(s) 195, 841
Sau96I GGNCC 2 cut(s) 29, 332
SbfI CCTGCAGG 1 cut(s) 640
SchI GAGTC 2 cut(s) 823, 824
ScrFI CCNGG 1 cut(s) 284
SdaI CCTGCAGG 1 cut(s) 640
SduI GDGCHC 4 cut(s) 311, 590, 683, 727
SfaNI GCATC 2 cut(s) 177, 286
SfcI CTRYAG 2 cut(s) 636, 759
SinI GGWCC 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 777
SmoI CTYRAG 1 cut(s) 777
SphI GCATGC 1 cut(s) 220
Sse8387I CCTGCAGG 1 cut(s) 640
Sse9I AATT 9 cut(s) 242, 367, 441, 520, 579, 618, 749, 854, 858
SsiI CCGC 2 cut(s) 61, 791
SspMI CTAG 1 cut(s) 591
StyD4I CCNGG 1 cut(s) 282
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 3 cut(s) 179, 228, 760
TaiI ACGT 2 cut(s) 9, 378
TaqI TCGA 2 cut(s) 37, 156
TaqII GACCGA 1 cut(s) 46
TasI AATT 9 cut(s) 242, 367, 441, 520, 579, 618, 749, 854, 858
TfiI GAWTC 3 cut(s) 34, 39, 800
Tru1I TTAA 5 cut(s) 339, 561, 606, 629, 857
Tru9I TTAA 5 cut(s) 339, 561, 606, 629, 857
TscAI CASTG 2 cut(s) 184, 763
TseFI GTSAC 2 cut(s) 179, 565
Tsp45I GTSAC 2 cut(s) 179, 565
TspDTI ATGAA 4 cut(s) 5, 80, 722, 750
TspGWI ACGGA 2 cut(s) 450, 614
TspRI CASTG 2 cut(s) 184, 763
Van91I CCANNNNNTGG 1 cut(s) 74
VneI GTGCAC 1 cut(s) 679
VpaK11BI GGWCC 1 cut(s) 29
VspI ATTAAT 1 cut(s) 857
XapI RAATTY 1 cut(s) 242
XceI RCATGY 1 cut(s) 220
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
XspI CTAG 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.