Rh7AG146500

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000675
Physical Location & Seq
Forward (+)
11882380 .. 11883087
708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG146500.1

Sequence Viewer

Length: 708 bp
ATGGCAACCATAATCACATTACTGCTATTGTTCTTCTCCTTCTTCTTCTTCTTCCTTCCTCACATAGCAGCTACAACCTGCGGCGCATCAGCATGCGCTGCCAGCGGCCCGTCAGTTCGATTCCCATTCCGGCTAACTGATCGCCAGCAAACGGGTTGTGGGTATTCCGGTAAGTTTGGTGTATCGTGCAACGGACACAAACAAACCATTCCTAACCTCCCATATTCCGGAAACTTCACGGTTGAGAGCATCAGTTACAAGGACCAACTCGTGTGGATCAACGGCCTCGACAACTGCATCTTCAAGCGGTTTCTTGACAAGGACTTCAGTCTCATAGGTTCACCCTTCCAGTACGCGCTTGACCTTCAAGAGTACACCTTCTACAAATGTTCGCCCCAACTTGTGCCACTGTGGTCTCCCATCTCCTGTCTCAGCAGTGACAACTATGAGGTCATTGGCGTCGCGAGCTGGTCAACGTTATCGAGATCACCTTCTCCCTATTGTGATGTGATTACCAGAGCTTTGGTTCCAGCAGAAAGTTATGAGTTGGGGAATTCTGACTTTGGTGTGGGGCTGACTTGGAAGGAGCCTGATTGTCGTTCTTGTGAAGCGAGTGGTAAGGTTTGTGGGTTTCAGAATGGTTCACAGTCGAAAATTCACTGCTCTAGTACTCTATCTTATGGTATGACTTGTTCTCAGCTTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

235

Amino Acids

25.86

Weight (kDa)

6.27

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 27 - 94 2.2e-13 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 86
AccII CGCG 2 cut(s) 356, 464
AccIII TCCGGA 1 cut(s) 227
AciI CCGC 3 cut(s) 81, 105, 307
AclI AACGTT 1 cut(s) 476
AclWI GGATC 1 cut(s) 284
AcsI RAATTY 2 cut(s) 553, 654
AcuI CTGAAG 1 cut(s) 310
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 3 cut(s) 353, 374, 670
AfiI CCNNNNNNNGG 2 cut(s) 151, 227
AgsI TTSAA 2 cut(s) 304, 368
AluBI AGCT 4 cut(s) 71, 468, 521, 700
AluI AGCT 4 cut(s) 71, 468, 521, 700
Alw26I GTCTC 3 cut(s) 335, 420, 434
AlwI GGATC 1 cut(s) 284
Aor13HI TCCGGA 1 cut(s) 227
AoxI GGCC 2 cut(s) 106, 283
ApeKI GCWGC 2 cut(s) 68, 98
ApoI RAATTY 2 cut(s) 553, 654
AspLEI GCGC 3 cut(s) 86, 98, 358
AspS9I GGNCC 2 cut(s) 107, 262
AsuHPI GGTGA 2 cut(s) 333, 480
AvaII GGWCC 1 cut(s) 262
BauI CACGAG 1 cut(s) 269
BbvI GCAGC 2 cut(s) 80, 85
BccI CCATC 1 cut(s) 428
BceAI ACGGC 1 cut(s) 298
BcoDI GTCTC 3 cut(s) 335, 420, 434
BfaI CTAG 1 cut(s) 666
BfuAI ACCTGC 1 cut(s) 86
BisI GCNGC 4 cut(s) 69, 82, 99, 106
BlsI GCNGC 4 cut(s) 70, 83, 100, 107
BmcAI AGTACT 1 cut(s) 670
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 2 cut(s) 107, 262
BmiI GGNNCC 2 cut(s) 528, 588
BmsI GCATC 3 cut(s) 95, 258, 306
BoxI GACNNNNGTC 1 cut(s) 327
BsaHI GRCGYC 1 cut(s) 459
BsaI GGTCTC 1 cut(s) 420
BsaWI WCCGGW 2 cut(s) 167, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 227
Bse1I ACTGG 1 cut(s) 349
BseAI TCCGGA 1 cut(s) 227
BseLI CCNNNNNNNGG 2 cut(s) 151, 227
BseMII CTCAG 1 cut(s) 445
BseNI ACTGG 1 cut(s) 349
BseXI GCAGC 2 cut(s) 80, 85
Bsh1236I CGCG 2 cut(s) 356, 464
BshFI GGCC 2 cut(s) 108, 285
BsiSI CCGG 3 cut(s) 130, 168, 228
BslI CCNNNNNNNGG 2 cut(s) 151, 227
BsmAI GTCTC 3 cut(s) 335, 420, 434
BsnI GGCC 2 cut(s) 108, 285
Bso31I GGTCTC 1 cut(s) 420
Bsp13I TCCGGA 1 cut(s) 227
Bsp143I GATC 3 cut(s) 139, 276, 485
Bsp68I TCGCGA 1 cut(s) 464
BspACI CCGC 3 cut(s) 81, 105, 307
BspANI GGCC 2 cut(s) 108, 285
BspCNI CTCAG 1 cut(s) 444
BspEI TCCGGA 1 cut(s) 227
BspFNI CGCG 2 cut(s) 356, 464
BspLI GGNNCC 2 cut(s) 528, 588
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 420
BsrI ACTGG 1 cut(s) 349
BssMI GATC 3 cut(s) 139, 276, 485
BssNI GRCGYC 1 cut(s) 459
BssSI CACGAG 1 cut(s) 269
Bst2BI CACGAG 1 cut(s) 269
Bst4CI ACNGT 3 cut(s) 241, 411, 648
BstACI GRCGYC 1 cut(s) 459
BstAPI GCANNNNNTGC 1 cut(s) 98
BstC8I GCNNGC 4 cut(s) 94, 103, 146, 466
BstDEI CTNAG 2 cut(s) 431, 696
BstFNI CGCG 2 cut(s) 356, 464
BstHHI GCGC 3 cut(s) 86, 98, 358
BstKTI GATC 3 cut(s) 142, 279, 488
BstMAI GTCTC 3 cut(s) 335, 420, 434
BstMBI GATC 3 cut(s) 139, 276, 485
BstMWI GCNNNNNNNGC 3 cut(s) 98, 102, 465
BstNSI RCATGY 1 cut(s) 96
BstPAI GACNNNNGTC 1 cut(s) 327
BstUI CGCG 2 cut(s) 356, 464
BstV1I GCAGC 2 cut(s) 80, 85
BstXI CCANNNNNNTGG 1 cut(s) 523
BsuRI GGCC 2 cut(s) 108, 285
BtsI GCAGTG 2 cut(s) 442, 658
BtsIMutI CAGTG 3 cut(s) 407, 442, 658
BtuMI TCGCGA 1 cut(s) 464
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 4 cut(s) 94, 103, 146, 466
CfoI GCGC 3 cut(s) 86, 98, 358
Cfr13I GGNCC 2 cut(s) 107, 262
CseI GACGC 1 cut(s) 448
Csp6I GTAC 3 cut(s) 352, 373, 669
CspCI CAANNNNNGTGG 2 cut(s) 254, 289
CviAII CATG 1 cut(s) 93
CviJI RGCY 9 cut(s) 71, 108, 133, 285, 468, 521, 574, 589, 700
CviKI_1 RGCY 9 cut(s) 71, 108, 133, 285, 468, 521, 574, 589, 700
CviQI GTAC 3 cut(s) 352, 373, 669
DdeI CTNAG 2 cut(s) 431, 696
DpnI GATC 3 cut(s) 141, 278, 487
DpnII GATC 3 cut(s) 139, 276, 485
Eco31I GGTCTC 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 310
EcoRI GAATTC 1 cut(s) 553
FaeI CATG 1 cut(s) 96
FatI CATG 1 cut(s) 92
Fnu4HI GCNGC 4 cut(s) 69, 82, 99, 106
Fsp4HI GCNGC 4 cut(s) 69, 82, 99, 106
FspBI CTAG 1 cut(s) 666
GlaI GCGC 3 cut(s) 85, 97, 357
GluI GCNGC 4 cut(s) 69, 82, 99, 106
HaeIII GGCC 2 cut(s) 108, 285
HapII CCGG 3 cut(s) 130, 168, 228
HgaI GACGC 1 cut(s) 448
HhaI GCGC 3 cut(s) 86, 98, 358
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 1 cut(s) 96
Hin6I GCGC 3 cut(s) 84, 96, 356
HinP1I GCGC 3 cut(s) 84, 96, 356
HincII GTYRAC 1 cut(s) 474
HindII GTYRAC 1 cut(s) 474
HinfI GANTC 1 cut(s) 120
HpaII CCGG 3 cut(s) 130, 168, 228
HphI GGTGA 2 cut(s) 333, 480
Hpy166II GTNNAC 4 cut(s) 341, 375, 474, 644
Hpy188I TCNGA 2 cut(s) 559, 636
Hpy188III TCNNGA 5 cut(s) 228, 314, 368, 463, 483
Hpy8I GTNNAC 4 cut(s) 341, 375, 474, 644
Hpy99I CGWCG 1 cut(s) 464
HpyAV CCTTC 7 cut(s) 49, 65, 355, 374, 388, 501, 577
HpyCH4III ACNGT 3 cut(s) 241, 411, 648
HpyCH4IV ACGT 1 cut(s) 476
HpyCH4V TGCA 2 cut(s) 189, 297
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 102, 465
HpyF3I CTNAG 2 cut(s) 431, 696
HpySE526I ACGT 1 cut(s) 476
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 1 cut(s) 96
HspAI GCGC 3 cut(s) 84, 96, 356
Kpn2I TCCGGA 1 cut(s) 227
Kzo9I GATC 3 cut(s) 139, 276, 485
LmnI GCTCC 1 cut(s) 586
Lsp1109I GCAGC 2 cut(s) 80, 85
LweI GCATC 3 cut(s) 95, 258, 306
MaeI CTAG 1 cut(s) 666
MaeII ACGT 1 cut(s) 476
MaeIII GTNAC 2 cut(s) 254, 437
MalI GATC 3 cut(s) 141, 278, 487
MboI GATC 3 cut(s) 139, 276, 485
MboII GAAGA 6 cut(s) 25, 34, 37, 40, 43, 292
MluCI AATT 2 cut(s) 553, 654
MnlI CCTC 4 cut(s) 69, 227, 296, 442
MroI TCCGGA 1 cut(s) 227
MslI CAYNNNNRTG 1 cut(s) 91
MspA1I CMGCKG 1 cut(s) 105
MspI CCGG 3 cut(s) 130, 168, 228
MvnI CGCG 2 cut(s) 356, 464
MwoI GCNNNNNNNGC 3 cut(s) 98, 102, 465
NdeII GATC 3 cut(s) 139, 276, 485
NlaIII CATG 1 cut(s) 96
NlaIV GGNNCC 2 cut(s) 528, 588
NmuCI GTSAC 1 cut(s) 437
NruI TCGCGA 1 cut(s) 464
NspI RCATGY 1 cut(s) 96
PaeI GCATGC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 120
PkrI GCNGC 4 cut(s) 70, 83, 100, 107
PshAI GACNNNNGTC 1 cut(s) 327
Psp1406I AACGTT 1 cut(s) 476
PspN4I GGNNCC 2 cut(s) 528, 588
PspPI GGNCC 2 cut(s) 107, 262
PsrI GAACNNNNNNTAC 2 cut(s) 676, 708
RruI TCGCGA 1 cut(s) 464
RsaI GTAC 3 cut(s) 353, 374, 670
RsaNI GTAC 3 cut(s) 352, 373, 669
RseI CAYNNNNRTG 1 cut(s) 91
SatI GCNGC 4 cut(s) 69, 82, 99, 106
Sau3AI GATC 3 cut(s) 139, 276, 485
Sau96I GGNCC 2 cut(s) 107, 262
ScaI AGTACT 1 cut(s) 670
SfaNI GCATC 3 cut(s) 95, 258, 306
SinI GGWCC 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 91
SphI GCATGC 1 cut(s) 96
Sse9I AATT 2 cut(s) 553, 654
SsiI CCGC 3 cut(s) 81, 105, 307
SspMI CTAG 1 cut(s) 666
TaaI ACNGT 3 cut(s) 241, 411, 648
TaiI ACGT 1 cut(s) 479
TaqI TCGA 4 cut(s) 118, 288, 482, 650
TasI AATT 2 cut(s) 553, 654
TatI WGTACW 2 cut(s) 372, 668
TauI GCSGC 2 cut(s) 84, 108
TfiI GAWTC 1 cut(s) 120
TscAI CASTG 3 cut(s) 414, 442, 665
TseFI GTSAC 1 cut(s) 437
TseI GCWGC 2 cut(s) 68, 98
Tsp45I GTSAC 1 cut(s) 437
TspGWI ACGGA 1 cut(s) 207
TspRI CASTG 3 cut(s) 414, 442, 665
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 2 cut(s) 553, 654
XceI RCATGY 1 cut(s) 96
XspI CTAG 1 cut(s) 666
ZrmI AGTACT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.