Rw7G012490

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000675
Physical Location & Seq
Forward (+)
11829371 .. 11830725
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G012490.1

Sequence Viewer

Length: 1167 bp
ATGGCTTGCTTGGAAATCTTCACCTTCTTATTCTTCTTCTCCTTCCTTCCTCATCTAGCATCCACCACCTGCCGCGGTAAATGCAGTTCCGACGGCCCAACTGTTCGATTCCCATTCTGGCTAAGAGATCACCACTCCTCGCATTGCGGGTGGTTAGGGTTTAATCTCTCATGCAACAACCAAAAGCAAACCATTCTTACTTTCCCATCTTCCGGGGATTTCATCGTCGACAACATTAATTACTTGGACCAAATCCTAACGATCAAAGACCCCAATAACTGCCTCATCAAGCGGTTCCTTGACGATGAAATGGATCTCTTGCCTTTACCTTTCTCCTACCTTCATGACTTTGCAAACTACACATTCTTCAATTGCTCGCCCAAAGCAAAACAACTAGATTGGTATCCAACCCTCTCTTGCCTCAGCAGTGACAACTACAAGGTCACTGCTGTGCCAACGACTTATTTACTTCATGCTGTCCCTGTTACTACTCCCCCATCGACGTCATCGCCGCAGGCTCCATCACCGTCTGATCCTTGCTCTGTGATTTCAACAGATATGATTCCAATAGAACAGAAGAATTATCATCCAGAACCATCAAATCCATCTGAGTGGGAGGACATTAACTTTCGTGTTCAGCTGCGGTGGGACGAGCCTGATTGTCGTTTTTGTGAGTCAGTTAATAAAGCTTGTGGGATTGTTCAGATGGGTATACAGGGCCCGGAAGTCGGGTGCCAAAATGGCTCTTCAAGAGCTGCAAAGATTGCCACAGTGATAGGGGTGGTAATGTCAGGGATATTGTGGTTGGTTGGGCTTGCATTGAGACTGACAAGGAATGATAGTCGTGAACAATCTACCGCAGAGTTGTCGATTTTACCTATTGATGAACAACTTCCGGTGGGCGTAATGGGGGGCCTTGATCATGCAACGATCGATTCATATCCAAAGACTCAACTCGGTGAGAGTCGGGAATTGCCCTACTCCGGTGACAACACCTGCCCAATATGTTTAGGAGAGTATCAGGCCAAGGAAACAATAAGGACTATACCCGAATGCAACCATTATTTCCATGCTAATTGTGTAGACAAGTGGCTTAGAAGGAACCCAACTTGCCCACTTTGTCGAAATCCACCGGAGGGAGGACGAGATAAGCCATTGATTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

388

Amino Acids

43.48

Weight (kDa)

5.37

Isoelectric Point (pI)

57.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 24 - 90 2.4e-17 Wall-associated receptor kinase galacturonan-binding
zf-rbx1 PF12678 330 - 375 9.5e-10 RING-H2 zinc finger domain
zf-RING_2 PF13639 331 - 375 9.3e-15 Ring finger domain
zf-C3HC4_2 PF13923 333 - 374 4.7e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 333 - 374 4.4e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 333 - 361 3.5e-08 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 77, 1004
AatII GACGTC 1 cut(s) 506
Acc36I ACCTGC 2 cut(s) 77, 1004
AccB1I GGYRCC 1 cut(s) 732
AccI GTMKAC 3 cut(s) 228, 712, 1083
AccII CGCG 1 cut(s) 75
AciI CCGC 7 cut(s) 73, 75, 147, 292, 512, 643, 858
AclWI GGATC 2 cut(s) 321, 527
AcyI GRCGYC 1 cut(s) 503
AfiI CCNNNNNNNGG 5 cut(s) 212, 728, 983, 1136, 1139
AgsI TTSAA 3 cut(s) 370, 552, 750
AleI CACNNNNGTG 1 cut(s) 449
AluBI AGCT 3 cut(s) 640, 689, 755
AluI AGCT 3 cut(s) 640, 689, 755
Alw26I GTCTC 1 cut(s) 817
AlwI GGATC 2 cut(s) 321, 527
AoxI GGCC 4 cut(s) 94, 718, 913, 1023
ApaI GGGCCC 1 cut(s) 722
ApeKI GCWGC 2 cut(s) 640, 755
AseI ATTAAT 2 cut(s) 237, 1161
Asp700I GAANNNNTTC 1 cut(s) 891
AspS9I GGNCC 5 cut(s) 95, 247, 718, 719, 913
AsuC2I CCSGG 2 cut(s) 214, 722
AsuHPI GGTGA 5 cut(s) 13, 122, 516, 971, 998
AvaII GGWCC 1 cut(s) 247
BaeGI GKGCMC 1 cut(s) 722
BanI GGYRCC 1 cut(s) 732
BanII GRGCYC 1 cut(s) 722
BbvCI CCTCAGC 1 cut(s) 422
BbvI GCAGC 2 cut(s) 627, 742
BccI CCATC 6 cut(s) 214, 505, 529, 604, 613, 700
BceAI ACGGC 1 cut(s) 109
BcgI CGANNNNNNTGC 2 cut(s) 849, 883
BciVI GTATCC 1 cut(s) 414
BclI TGATCA 1 cut(s) 919
BcnI CCSGG 2 cut(s) 214, 722
BcoDI GTCTC 1 cut(s) 817
BfaI CTAG 2 cut(s) 56, 395
BfuAI ACCTGC 2 cut(s) 77, 1004
BfuI GTATCC 1 cut(s) 414
BglI GCCNNNNNGGC 1 cut(s) 741
BisI GCNGC 4 cut(s) 73, 512, 641, 756
BlsI GCNGC 4 cut(s) 74, 513, 642, 757
Bme1390I CCNGG 2 cut(s) 214, 722
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 5 cut(s) 95, 247, 718, 719, 913
BmiI GGNNCC 6 cut(s) 296, 519, 720, 734, 914, 1103
BmrFI CCNGG 2 cut(s) 214, 722
BmsI GCATC 1 cut(s) 68
Bpu10I CCTNAGC 1 cut(s) 422
BpuMI CCSGG 2 cut(s) 214, 722
Bsa29I ATCGAT 1 cut(s) 933
BsaBI GATNNNNATC 2 cut(s) 402, 939
BsaHI GRCGYC 1 cut(s) 503
BsaJI CCNNGG 3 cut(s) 73, 213, 1026
BsaWI WCCGGW 3 cut(s) 895, 983, 1132
Bsc4I CCNNNNNNNGG 5 cut(s) 212, 728, 983, 1136, 1139
Bse3DI GCAATG 1 cut(s) 142
Bse8I GATNNNNATC 2 cut(s) 402, 939
BseCI ATCGAT 1 cut(s) 933
BseDI CCNNGG 3 cut(s) 73, 213, 1026
BseGI GGATG 2 cut(s) 59, 586
BseJI GATNNNNATC 2 cut(s) 402, 939
BseLI CCNNNNNNNGG 5 cut(s) 212, 728, 983, 1136, 1139
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 2 cut(s) 436, 600
BseRI GAGGAG 1 cut(s) 127
BseSI GKGCMC 1 cut(s) 722
BseXI GCAGC 2 cut(s) 627, 742
Bsh1236I CGCG 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 933
BshFI GGCC 4 cut(s) 96, 720, 915, 1025
BshNI GGYRCC 1 cut(s) 732
BshVI ATCGAT 1 cut(s) 933
BsiEI CGRYCG 1 cut(s) 933
BsiSI CCGG 5 cut(s) 213, 722, 896, 984, 1133
BslFI GGGAC 2 cut(s) 464, 662
BslI CCNNNNNNNGG 5 cut(s) 212, 728, 983, 1136, 1139
BsmAI GTCTC 1 cut(s) 817
BsmFI GGGAC 2 cut(s) 464, 662
BsmI GAATGC 1 cut(s) 1058
BsnI GGCC 4 cut(s) 96, 720, 915, 1025
Bsp120I GGGCCC 1 cut(s) 718
Bsp1286I GDGCHC 1 cut(s) 722
Bsp143I GATC 6 cut(s) 127, 261, 313, 532, 919, 930
BspACI CCGC 7 cut(s) 73, 75, 147, 292, 512, 643, 858
BspANI GGCC 4 cut(s) 96, 720, 915, 1025
BspCNI CTCAG 2 cut(s) 435, 601
BspDI ATCGAT 1 cut(s) 933
BspFNI CGCG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 343
BspLI GGNNCC 6 cut(s) 296, 519, 720, 734, 914, 1103
BspMI ACCTGC 2 cut(s) 77, 1004
BspPI GGATC 2 cut(s) 321, 527
BspQI GCTCTTC 1 cut(s) 751
BspT107I GGYRCC 1 cut(s) 732
BsrDI GCAATG 1 cut(s) 142
BssECI CCNNGG 3 cut(s) 73, 213, 1026
BssMI GATC 6 cut(s) 127, 261, 313, 532, 919, 930
BssNAI GTATAC 1 cut(s) 713
BssNI GRCGYC 1 cut(s) 503
BssT1I CCWWGG 1 cut(s) 1026
Bst1107I GTATAC 1 cut(s) 713
Bst4CI ACNGT 3 cut(s) 103, 528, 772
Bst6I CTCTTC 1 cut(s) 751
BstACI GRCGYC 1 cut(s) 503
BstAPI GCANNNNNTGC 1 cut(s) 764
BstC8I GCNNGC 4 cut(s) 7, 377, 516, 816
BstDEI CTNAG 4 cut(s) 122, 422, 609, 1094
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 2 cut(s) 59, 586
BstFNI CGCG 1 cut(s) 75
BstKTI GATC 6 cut(s) 130, 264, 316, 535, 922, 933
BstMAI GTCTC 1 cut(s) 817
BstMBI GATC 6 cut(s) 127, 261, 313, 532, 919, 930
BstMCI CGRYCG 1 cut(s) 933
BstMWI GCNNNNNNNGC 3 cut(s) 81, 741, 764
BstSCI CCNGG 2 cut(s) 212, 720
BstSLI GKGCMC 1 cut(s) 722
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 627, 742
BstX2I RGATCY 1 cut(s) 313
BstXI CCANNNNNNTGG 1 cut(s) 612
BstYI RGATCY 1 cut(s) 313
BstZ17I GTATAC 1 cut(s) 713
Bsu15I ATCGAT 1 cut(s) 933
BsuI GTATCC 1 cut(s) 414
BsuRI GGCC 4 cut(s) 96, 720, 915, 1025
BsuTUI ATCGAT 1 cut(s) 933
BtgI CCRYGG 1 cut(s) 73
BtgZI GCGATG 1 cut(s) 492
BtsCI GGATG 2 cut(s) 59, 586
BtsI GCAGTG 2 cut(s) 433, 444
BtsIMutI CAGTG 3 cut(s) 433, 444, 777
BveI ACCTGC 2 cut(s) 77, 1004
Cac8I GCNNGC 4 cut(s) 7, 377, 516, 816
CciI TCATGA 1 cut(s) 343
Cfr13I GGNCC 5 cut(s) 95, 247, 718, 719, 913
Cfr42I CCGCGG 1 cut(s) 76
ClaI ATCGAT 1 cut(s) 933
CviAII CATG 5 cut(s) 171, 344, 473, 923, 1070
DdeI CTNAG 4 cut(s) 122, 422, 609, 1094
DpnI GATC 6 cut(s) 129, 263, 315, 534, 921, 932
DpnII GATC 6 cut(s) 127, 261, 313, 532, 919, 930
Eam1104I CTCTTC 1 cut(s) 751
EarI CTCTTC 1 cut(s) 751
Eco130I CCWWGG 1 cut(s) 1026
Eco24I GRGCYC 1 cut(s) 722
Eco47I GGWCC 1 cut(s) 247
EcoO109I RGGNCCY 2 cut(s) 718, 913
EcoT14I CCWWGG 1 cut(s) 1026
EcoT38I GRGCYC 1 cut(s) 722
ErhI CCWWGG 1 cut(s) 1026
FaeI CATG 5 cut(s) 174, 347, 476, 926, 1073
FaqI GGGAC 2 cut(s) 464, 662
FatI CATG 5 cut(s) 170, 343, 472, 922, 1069
FauI CCCGC 1 cut(s) 140
FbaI TGATCA 1 cut(s) 919
FblI GTMKAC 3 cut(s) 228, 712, 1083
Fnu4HI GCNGC 4 cut(s) 73, 512, 641, 756
FokI GGATG 2 cut(s) 46, 573
FriOI GRGCYC 1 cut(s) 722
Fsp4HI GCNGC 4 cut(s) 73, 512, 641, 756
FspBI CTAG 2 cut(s) 56, 395
GluI GCNGC 4 cut(s) 73, 512, 641, 756
HaeIII GGCC 4 cut(s) 96, 720, 915, 1025
HapII CCGG 5 cut(s) 213, 722, 896, 984, 1133
Hin1I GRCGYC 1 cut(s) 503
Hin1II CATG 5 cut(s) 174, 347, 476, 926, 1073
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 687
HinfI GANTC 6 cut(s) 108, 562, 674, 935, 949, 964
HpaII CCGG 5 cut(s) 213, 722, 896, 984, 1133
HphI GGTGA 5 cut(s) 13, 122, 516, 971, 998
Hpy166II GTNNAC 4 cut(s) 229, 713, 848, 1084
Hpy188I TCNGA 4 cut(s) 91, 532, 610, 705
Hpy188III TCNNGA 5 cut(s) 344, 590, 750, 845, 968
Hpy8I GTNNAC 4 cut(s) 229, 713, 848, 1084
Hpy99I CGWCG 3 cut(s) 95, 230, 505
HpyAV CCTTC 5 cut(s) 34, 52, 56, 350, 1092
HpyCH4III ACNGT 3 cut(s) 103, 528, 772
HpyCH4IV ACGT 1 cut(s) 503
HpyCH4V TGCA 7 cut(s) 84, 174, 353, 758, 818, 926, 1056
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 741, 764
HpyF3I CTNAG 4 cut(s) 122, 422, 609, 1094
HpySE526I ACGT 1 cut(s) 503
Hsp92I GRCGYC 1 cut(s) 503
Hsp92II CATG 5 cut(s) 174, 347, 476, 926, 1073
Ksp22I TGATCA 1 cut(s) 919
KspI CCGCGG 1 cut(s) 76
Kzo9I GATC 6 cut(s) 127, 261, 313, 532, 919, 930
LguI GCTCTTC 1 cut(s) 751
LmnI GCTCC 1 cut(s) 523
Lsp1109I GCAGC 2 cut(s) 627, 742
LweI GCATC 1 cut(s) 68
MaeI CTAG 2 cut(s) 56, 395
MaeII ACGT 1 cut(s) 503
MaeIII GTNAC 4 cut(s) 428, 442, 484, 986
MalI GATC 6 cut(s) 129, 263, 315, 534, 921, 932
MboI GATC 6 cut(s) 127, 261, 313, 532, 919, 930
MboII GAAGA 7 cut(s) 10, 25, 28, 201, 358, 589, 738
MfeI CAATTG 1 cut(s) 370
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 1 cut(s) 722
MluCI AATT 6 cut(s) 238, 370, 580, 971, 1075, 1162
MlyI GAGTC 3 cut(s) 683, 943, 973
MmeI TCCRAC 2 cut(s) 114, 431
MnlI CCTC 8 cut(s) 60, 148, 293, 422, 431, 610, 1129, 1133
MroXI GAANNNNTTC 1 cut(s) 891
MseI TTAA 5 cut(s) 162, 237, 624, 681, 1161
MslI CAYNNNNRTG 2 cut(s) 449, 610
MspA1I CMGCKG 2 cut(s) 75, 640
MspI CCGG 5 cut(s) 213, 722, 896, 984, 1133
MspR9I CCNGG 2 cut(s) 214, 722
MunI CAATTG 1 cut(s) 370
Mva1269I GAATGC 1 cut(s) 1058
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 3 cut(s) 81, 741, 764
NciI CCSGG 2 cut(s) 214, 722
NdeII GATC 6 cut(s) 127, 261, 313, 532, 919, 930
NlaIII CATG 5 cut(s) 174, 347, 476, 926, 1073
NlaIV GGNNCC 6 cut(s) 296, 519, 720, 734, 914, 1103
NmuCI GTSAC 3 cut(s) 428, 442, 986
OliI CACNNNNGTG 1 cut(s) 449
PagI TCATGA 1 cut(s) 343
PaqCI CACCTGC 2 cut(s) 77, 1004
PciSI GCTCTTC 1 cut(s) 751
PctI GAATGC 1 cut(s) 1058
PdmI GAANNNNTTC 1 cut(s) 891
PfeI GAWTC 3 cut(s) 108, 562, 935
PkrI GCNGC 4 cut(s) 74, 513, 642, 757
Ple19I CGATCG 1 cut(s) 933
PleI GAGTC 3 cut(s) 682, 943, 972
PpsI GAGTC 3 cut(s) 682, 943, 972
PshBI ATTAAT 2 cut(s) 237, 1161
PspN4I GGNNCC 6 cut(s) 296, 519, 720, 734, 914, 1103
PspOMI GGGCCC 1 cut(s) 718
PspPI GGNCC 5 cut(s) 95, 247, 718, 719, 913
PsrI GAACNNNNNNTAC 2 cut(s) 70, 102
PsuI RGATCY 1 cut(s) 313
PvuI CGATCG 1 cut(s) 933
PvuII CAGCTG 1 cut(s) 640
RseI CAYNNNNRTG 2 cut(s) 449, 610
SacII CCGCGG 1 cut(s) 76
SalI GTCGAC 1 cut(s) 227
SapI GCTCTTC 1 cut(s) 751
SaqAI TTAA 5 cut(s) 162, 237, 624, 681, 1161
SatI GCNGC 4 cut(s) 73, 512, 641, 756
Sau3AI GATC 6 cut(s) 127, 261, 313, 532, 919, 930
Sau96I GGNCC 5 cut(s) 95, 247, 718, 719, 913
SchI GAGTC 3 cut(s) 683, 943, 973
ScrFI CCNGG 2 cut(s) 214, 722
SduI GDGCHC 1 cut(s) 722
SfaNI GCATC 1 cut(s) 68
Sfr303I CCGCGG 1 cut(s) 76
SgrBI CCGCGG 1 cut(s) 76
SinI GGWCC 1 cut(s) 247
SmiMI CAYNNNNRTG 2 cut(s) 449, 610
Sse9I AATT 6 cut(s) 238, 370, 580, 971, 1075, 1162
SsiI CCGC 7 cut(s) 73, 75, 147, 292, 512, 643, 858
SspMI CTAG 2 cut(s) 56, 395
StyD4I CCNGG 2 cut(s) 212, 720
StyI CCWWGG 1 cut(s) 1026
TaaI ACNGT 3 cut(s) 103, 528, 772
TaiI ACGT 1 cut(s) 506
TaqI TCGA 6 cut(s) 106, 228, 500, 869, 933, 1123
TasI AATT 6 cut(s) 238, 370, 580, 971, 1075, 1162
TauI GCSGC 2 cut(s) 75, 514
TfiI GAWTC 3 cut(s) 108, 562, 935
Tru1I TTAA 5 cut(s) 162, 237, 624, 681, 1161
Tru9I TTAA 5 cut(s) 162, 237, 624, 681, 1161
TscAI CASTG 3 cut(s) 433, 451, 777
TseFI GTSAC 3 cut(s) 428, 442, 986
TseI GCWGC 2 cut(s) 640, 755
Tsp45I GTSAC 3 cut(s) 428, 442, 986
TspDTI ATGAA 6 cut(s) 211, 321, 332, 461, 900, 927
TspRI CASTG 3 cut(s) 433, 451, 777
VpaK11BI GGWCC 1 cut(s) 247
VspI ATTAAT 2 cut(s) 237, 1161
XmiI GTMKAC 3 cut(s) 228, 712, 1083
XmnI GAANNNNTTC 1 cut(s) 891
XspI CTAG 2 cut(s) 56, 395
ZraI GACGTC 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.