Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8140360.1

Orthogroup ID

OG0000675

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 558

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8140360.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 430 bp

atggaccatgacttcagtcttgtggactcacccttctcatacttttacggcctcgaaagctacgtgttcctcaactgttcgtcgacgtcccgagaagagatactagcaccgtcttcaccaattgattgcctcagtagtgaggactacaaggtcatagctgtgcagtctacttggttctatgctgatcttaatacatcaagcacttcattgaggccactggctcagacatcgttatccagtctttgttccgtgatctccacagctatgattccactgtcaggttcatttgacgggtgggatcttaactttggtgttcggttggcatgggacatgcccgattgtcgtctatgcgaagcaagcgggagattatgtgggtttgatgttgctacaacttcgcaagttgttgtgtgctctggactttcaaattcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind zf-RING_2

Protein Analysis

143

Amino Acids

15.56

Weight (kDa)

4.08

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000675)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04540 FvH4_5g04550 FvH4_5g04551 FvH4_5g04552 FvH4_5g04554 FvH4_5g29040
malus_domestica	MD06G1106600.v1.1 MD14G1128600.v1.1 MD14G1128700.v1.1
prunus_persica	Prupe.5G118700_v2.0.a1 Prupe.5G118800_v2.0.a1 Prupe.5G119000_v2.0.a1 Prupe.5G119300_v2.0.a1 Prupe.5G119500_v2.0.a1 Prupe.5G119600_v2.0.a1 Prupe.5G119700_v2.0.a1 Prupe.5G119800_v2.0.a1 Prupe.5G119900_v2.0.a1
pyrus_communis	pycom06g10070 pycom06g10090
rosa_chinensis	RchiOBHm_Chr7g0194821 RchiOBHm_Chr7g0194841 RchiOBHm_Chr7g0194851 RchiOBHm_Chr7g0194861 RchiOBHm_Chr7g0194871 RchiOBHm_Chr7g0226371
rosa_laevigata	RLG00000001745 RLG00000004159 RLG00000004160 RLG00000004162 RLG00000004163 RLG00000004166 RLG00000013439
rosa_multiflora	Rmu_co8140360.1_g000001 Rmu_co8197174.1_g000001 Rmu_co8260763.1_g000001 Rmu_co8287607.1_g000001 Rmu_co8453499.1_g000001 Rmu_sc0011834.1_g000004 Rmu_sc0017428.1_g000003 Rmu_sc0040407.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260910 Rroxscaffold_3G00260920
rosa_rugosa	Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0236700
rosa_samantha	Rh7AG146400 Rh7AG146500 Rh7AG146600 Rh7AG383700 Rh7BG146300 Rh7BG146400 Rh7BG146500 Rh7BG146600 Rh7BG146900 Rh7BG147100 Rh7BG147200 Rh7BG147300 Rh7BG370800 Rh7CG150400 Rh7CG150500 Rh7CG150600 Rh7CG403300 Rh7DG147600 Rh7DG147700 Rh7DG147800 Rh7DG382100 Rh7DG482500
rosa_wichuraiana	Rw7G012490 Rw7G012500 Rw7G012510 Rw7G032160 Rw7G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	149
AatII	GACGTC	1 cut(s)	89
AccI	GTMKAC	2 cut(s)	83, 167
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	424
AcyI	GRCGYC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	423
AluBI	AGCT	3 cut(s)	60, 158, 263
AluI	AGCT	3 cut(s)	60, 158, 263
Alw21I	GWGCWC	1 cut(s)	413
AlwI	GGATC	1 cut(s)	306
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	2 cut(s)	49, 212
ApoI	RAATTY	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	21, 108
AvaI	CYCGRG	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	413
BceAI	ACGGC	1 cut(s)	64
BfaI	CTAG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	4
BoxI	GACNNNNGTC	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	64
BsaHI	GRCGYC	1 cut(s)	86
BsaXI	ACNNNNNCTCC	2 cut(s)	355, 385
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	2 cut(s)	222, 237
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMII	CTCAG	2 cut(s)	145, 236
BseNI	ACTGG	2 cut(s)	222, 237
BsgI	GTGCAG	1 cut(s)	182
BshFI	GGCC	2 cut(s)	51, 214
BsiHKAI	GWGCWC	1 cut(s)	413
BsiHKCI	CYCGRG	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	73, 341
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmFI	GGGAC	2 cut(s)	73, 341
BsnI	GGCC	2 cut(s)	51, 214
BsoBI	CYCGRG	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp143I	GATC	3 cut(s)	184, 252, 298
BspACI	CCGC	1 cut(s)	360
BspANI	GGCC	2 cut(s)	51, 214
BspCNI	CTCAG	2 cut(s)	144, 235
BspPI	GGATC	1 cut(s)	306
BsrI	ACTGG	2 cut(s)	222, 237
BssMI	GATC	3 cut(s)	184, 252, 298
BssNI	GRCGYC	1 cut(s)	86
Bst4CI	ACNGT	3 cut(s)	77, 111, 276
Bst6I	CTCTTC	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	86
BstBAI	YACGTR	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	2 cut(s)	131, 222
BstKTI	GATC	3 cut(s)	187, 255, 301
BstMBI	GATC	3 cut(s)	184, 252, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 357
BstNSI	RCATGY	1 cut(s)	334
BstPAI	GACNNNNGTC	1 cut(s)	15
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	51, 214
BtsIMutI	CAGTG	2 cut(s)	215, 272
Cac8I	GCNNGC	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	3 cut(s)	8, 324, 331
CviJI	RGCY	6 cut(s)	51, 60, 158, 214, 221, 263
CviKI_1	RGCY	6 cut(s)	51, 60, 158, 214, 221, 263
DdeI	CTNAG	2 cut(s)	131, 222
DpnI	GATC	3 cut(s)	186, 254, 300
DpnII	GATC	3 cut(s)	184, 252, 298
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	90
FaeI	CATG	3 cut(s)	11, 327, 334
FaiI	YATR	9 cut(s)	9, 40, 155, 180, 266, 325, 332, 349, 370
FaqI	GGGAC	2 cut(s)	73, 341
FatI	CATG	3 cut(s)	7, 323, 330
FauI	CCCGC	1 cut(s)	353
FblI	GTMKAC	2 cut(s)	83, 167
FspBI	CTAG	1 cut(s)	104
HaeIII	GGCC	2 cut(s)	51, 214
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	3 cut(s)	11, 327, 334
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	26, 268
HphI	GGTGA	2 cut(s)	21, 108
Hpy166II	GTNNAC	3 cut(s)	25, 84, 168
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	2 cut(s)	90, 414
Hpy8I	GTNNAC	3 cut(s)	25, 84, 168
Hpy99I	CGWCG	2 cut(s)	85, 88
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	3 cut(s)	77, 111, 276
HpyCH4IV	ACGT	2 cut(s)	63, 86
HpyCH4V	TGCA	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 357
HpyF3I	CTNAG	2 cut(s)	131, 222
HpySE526I	ACGT	2 cut(s)	63, 86
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	3 cut(s)	11, 327, 334
Kzo9I	GATC	3 cut(s)	184, 252, 298
LpnPI	CCDG	4 cut(s)	203, 250, 264, 399
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	2 cut(s)	63, 86
MalI	GATC	3 cut(s)	186, 254, 300
MboI	GATC	3 cut(s)	184, 252, 298
MboII	GAAGA	2 cut(s)	105, 107
MfeI	CAATTG	1 cut(s)	120
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	1 cut(s)	413
MluCI	AATT	2 cut(s)	120, 424
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	5 cut(s)	62, 80, 133, 140, 204
MseI	TTAA	2 cut(s)	189, 303
MslI	CAYNNNNRTG	2 cut(s)	158, 263
MunI	CAATTG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	57, 357
NdeII	GATC	3 cut(s)	184, 252, 298
NlaIII	CATG	3 cut(s)	11, 327, 334
NspI	RCATGY	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Ppu21I	YACGTR	1 cut(s)	64
PshAI	GACNNNNGTC	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	298
RseI	CAYNNNNRTG	2 cut(s)	158, 263
SalI	GTCGAC	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	189, 303
Sau3AI	GATC	3 cut(s)	184, 252, 298
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	413
SetI	ASST	7 cut(s)	62, 66, 89, 153, 160, 265, 283
SgrDI	CGTCGACG	1 cut(s)	82
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	158, 263
Sse9I	AATT	2 cut(s)	120, 424
SsiI	CCGC	1 cut(s)	360
SspMI	CTAG	1 cut(s)	104
TaaI	ACNGT	3 cut(s)	77, 111, 276
TaiI	ACGT	2 cut(s)	66, 89
TaqI	TCGA	2 cut(s)	54, 83
TasI	AATT	2 cut(s)	120, 424
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	2 cut(s)	189, 303
Tru9I	TTAA	2 cut(s)	189, 303
TscAI	CASTG	2 cut(s)	222, 279
TspDTI	ATGAA	2 cut(s)	195, 273
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	2 cut(s)	222, 279
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	424
XceI	RCATGY	1 cut(s)	334
XmiI	GTMKAC	2 cut(s)	83, 167
XspI	CTAG	1 cut(s)	104
ZraI	GACGTC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.