Rh7BG147200

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000675
Physical Location & Seq
Forward (+)
10949953 .. 10952581
2629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG147200.1

Sequence Viewer

Length: 912 bp
ATGTTCGCACTTTATATTTACACCTTAATCAGGGACCGTGGTCGCATCAATGAACCCATCACAGAATTATCCAGTGTGACCATTCCACAGATTCATGTCGTTATAACGGGCCTTAATGATCTAACCATTGAATCATATCCGAAGACTCAACTTGGCGAGAAATGGGAATTTCCAAGTCCCGAGGACAGCACTTGCCCAATATGTTTGTGCGAGTACCAACCCGAGGAAACTATAAGGACAATACCTGAATGCAATCATCATTTTCATGCCAGTTGCATTGATGAGTGGCTCAGAAAGAATCCTACGTGCCCAGTTTGTCGAAAAGTTCCGCAGGAGGATAACAAAACAACTGCCACATGCCCTCGATTGGCATGCACTTCCCACAGCCCATCCATTCAATTCCCTTTCCGACTAGCAAATCGACAACTCTCAAGCTGTGGGTATGCAGGGTTTGATCTCTCATGCAATAACCAAAAGCAAACCATCCTCACTCTCCCATCTTCCGGGAACTTCATTGTCCAAAACATCAACTACAAAGAACAAATCGTAACGATCAACGACCCTGAGAACTGCCTCCCAAAAAGGTTCCTCAACGGTGACCACTTCAACCTCACTGATTCACCCTTTACATTCTGGACTGACACCAGAAACTACACGTTCCTCAACTGCTCAGCTAAAGATGGAACGTTGGCTGCATCCATCTCTTGCCTCAGCAGTGACTACTACAAGGTCCTTCTTGTGCCTACATCAGATTGGCCAACGTCATGGTATCCTTGCTCTATCATCTCCACAGCTTTGGTTCCAATATATTCATTTCAGTGGAGAGATCTTAATGACGTCCTTGATATTCGTTTGTCATGGAACAAGCCTGATTGTCGTTCTTGTGAAGCAGGAGGCCGGTCCACGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

303

Amino Acids

34.46

Weight (kDa)

5.55

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 63 - 107 8.3e-09 RING-H2 zinc finger domain
zf-RING_2 PF13639 64 - 107 5.2e-15 Ring finger domain
zf-RING_11 PF17123 65 - 93 3e-07 RING-like zinc finger
zf-C3HC4_2 PF13923 65 - 106 3.2e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 65 - 106 1.6e-06 Zinc finger, C3HC4 type (RING finger)
GUB_WAK_bind PF13947 120 - 187 3e-18 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 104
AatII GACGTC 1 cut(s) 840
AciI CCGC 1 cut(s) 329
AclI AACGTT 1 cut(s) 686
AcoI YGGCCR 1 cut(s) 755
AcsI RAATTY 1 cut(s) 167
AcyI GRCGYC 1 cut(s) 837
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 4 cut(s) 30, 223, 367, 503
AflIII ACRYGT 1 cut(s) 654
AgsI TTSAA 3 cut(s) 131, 398, 607
AluBI AGCT 3 cut(s) 435, 674, 794
AluI AGCT 3 cut(s) 435, 674, 794
Ama87I CYCGRG 2 cut(s) 179, 221
AoxI GGCC 3 cut(s) 109, 755, 895
ApeKI GCWGC 1 cut(s) 692
ApoI RAATTY 1 cut(s) 167
AspS9I GGNCC 4 cut(s) 34, 109, 730, 900
AsuC2I CCSGG 1 cut(s) 505
AsuHPI GGTGA 2 cut(s) 608, 612
AvaI CYCGRG 2 cut(s) 179, 221
AvaII GGWCC 3 cut(s) 34, 730, 900
BaeGI GKGCMC 1 cut(s) 311
BalI TGGCCA 1 cut(s) 757
BbsI GAAGAC 1 cut(s) 149
BbvCI CCTCAGC 1 cut(s) 710
BbvI GCAGC 1 cut(s) 679
BccI CCATC 6 cut(s) 65, 397, 491, 505, 674, 707
BcgI CGANNNNNNTGC 2 cut(s) 354, 388
BciVI GTATCC 1 cut(s) 780
BcnI CCSGG 1 cut(s) 505
BfaI CTAG 1 cut(s) 413
BfuI GTATCC 1 cut(s) 780
BglII AGATCT 1 cut(s) 826
BisI GCNGC 1 cut(s) 693
BlpI GCTNAGC 1 cut(s) 670
BlsI GCNGC 1 cut(s) 694
Bme1390I CCNGG 1 cut(s) 505
Bme18I GGWCC 3 cut(s) 34, 730, 900
BmeT110I CYCGRG 2 cut(s) 179, 221
BmgT120I GGNCC 4 cut(s) 34, 109, 730, 900
BmiI GGNNCC 3 cut(s) 35, 587, 801
BmrFI CCNGG 1 cut(s) 505
BmrI ACTGGG 1 cut(s) 305
BmsI GCATC 2 cut(s) 54, 704
BmuI ACTGGG 1 cut(s) 305
BoxI GACNNNNGTC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 710
Bpu1102I GCTNAGC 1 cut(s) 670
BpuEI CTTGAG 1 cut(s) 415
BpuMI CCSGG 1 cut(s) 505
BsaAI YACGTR 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 837
BsaJI CCNNGG 3 cut(s) 37, 180, 222
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 223, 367, 503
Bse118I RCCGGY 1 cut(s) 897
Bse1I ACTGG 3 cut(s) 72, 270, 311
BseDI CCNNGG 3 cut(s) 37, 180, 222
BseGI GGATG 3 cut(s) 389, 483, 695
BseLI CCNNNNNNNGG 4 cut(s) 30, 223, 367, 503
BseMII CTCAG 4 cut(s) 304, 555, 684, 724
BseNI ACTGG 3 cut(s) 72, 270, 311
BseSI GKGCMC 1 cut(s) 311
BseXI GCAGC 1 cut(s) 679
BshFI GGCC 3 cut(s) 111, 757, 897
BsiHKCI CYCGRG 2 cut(s) 179, 221
BsiSI CCGG 2 cut(s) 504, 898
BslFI GGGAC 2 cut(s) 47, 162
BslI CCNNNNNNNGG 4 cut(s) 30, 223, 367, 503
BsmFI GGGAC 2 cut(s) 47, 162
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 3 cut(s) 111, 757, 897
BsoBI CYCGRG 2 cut(s) 179, 221
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 4 cut(s) 118, 454, 552, 826
Bsp1720I GCTNAGC 1 cut(s) 670
BspACI CCGC 1 cut(s) 329
BspANI GGCC 3 cut(s) 111, 757, 897
BspCNI CTCAG 4 cut(s) 303, 556, 683, 723
BspLI GGNNCC 3 cut(s) 35, 587, 801
BsrFI RCCGGY 1 cut(s) 897
BsrI ACTGG 3 cut(s) 72, 270, 311
BssAI RCCGGY 1 cut(s) 897
BssECI CCNNGG 3 cut(s) 37, 180, 222
BssMI GATC 4 cut(s) 118, 454, 552, 826
BssNI GRCGYC 1 cut(s) 837
Bst4CI ACNGT 2 cut(s) 38, 596
BstACI GRCGYC 1 cut(s) 837
BstBAI YACGTR 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 4 cut(s) 290, 564, 670, 710
BstDSI CCRYGG 1 cut(s) 37
BstEII GGTNACC 1 cut(s) 596
BstENI CCTNNNNNAGG 1 cut(s) 28
BstF5I GGATG 3 cut(s) 389, 483, 695
BstKTI GATC 4 cut(s) 121, 457, 555, 829
BstMBI GATC 4 cut(s) 118, 454, 552, 826
BstNSI RCATGY 2 cut(s) 360, 375
BstPAI GACNNNNGTC 1 cut(s) 39
BstPI GGTNACC 1 cut(s) 596
BstSCI CCNGG 1 cut(s) 503
BstSLI GKGCMC 1 cut(s) 311
BstV1I GCAGC 1 cut(s) 679
BstV2I GAAGAC 1 cut(s) 149
BstX2I RGATCY 1 cut(s) 826
BstXI CCANNNNNNTGG 2 cut(s) 765, 796
BstYI RGATCY 1 cut(s) 826
BsuI GTATCC 1 cut(s) 780
BsuRI GGCC 3 cut(s) 111, 757, 897
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 3 cut(s) 389, 483, 695
BtsI GCAGTG 1 cut(s) 721
BtsIMutI CAGTG 4 cut(s) 79, 612, 721, 824
Cac8I GCNNGC 1 cut(s) 373
Cfr10I RCCGGY 1 cut(s) 897
Cfr13I GGNCC 4 cut(s) 34, 109, 730, 900
Csp6I GTAC 1 cut(s) 214
CviAII CATG 7 cut(s) 95, 266, 357, 372, 462, 765, 858
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 4 cut(s) 290, 564, 670, 710
DpnI GATC 4 cut(s) 120, 456, 554, 828
DpnII GATC 4 cut(s) 118, 454, 552, 826
EaeI YGGCCR 1 cut(s) 755
Eco47I GGWCC 3 cut(s) 34, 730, 900
Eco88I CYCGRG 2 cut(s) 179, 221
Eco91I GGTNACC 1 cut(s) 596
EcoNI CCTNNNNNAGG 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 730
EcoO65I GGTNACC 1 cut(s) 596
FaeI CATG 7 cut(s) 98, 269, 360, 375, 465, 768, 861
FaqI GGGAC 2 cut(s) 47, 162
FatI CATG 7 cut(s) 94, 265, 356, 371, 461, 764, 857
Fnu4HI GCNGC 1 cut(s) 693
FokI GGATG 3 cut(s) 376, 470, 682
Fsp4HI GCNGC 1 cut(s) 693
FspBI CTAG 1 cut(s) 413
GluI GCNGC 1 cut(s) 693
HaeIII GGCC 3 cut(s) 111, 757, 897
HapII CCGG 2 cut(s) 504, 898
Hin1I GRCGYC 1 cut(s) 837
Hin1II CATG 7 cut(s) 98, 269, 360, 375, 465, 768, 861
HinfI GANTC 5 cut(s) 91, 131, 145, 298, 617
HpaII CCGG 2 cut(s) 504, 898
HphI GGTGA 2 cut(s) 608, 612
Hpy166II GTNNAC 1 cut(s) 903
Hpy188I TCNGA 4 cut(s) 141, 293, 410, 751
Hpy188III TCNNGA 2 cut(s) 179, 634
Hpy8I GTNNAC 1 cut(s) 903
HpyAV CCTTC 1 cut(s) 743
HpyCH4III ACNGT 2 cut(s) 38, 596
HpyCH4IV ACGT 6 cut(s) 305, 656, 686, 761, 837, 905
HpyCH4V TGCA 6 cut(s) 252, 276, 375, 446, 465, 695
HpyF3I CTNAG 4 cut(s) 290, 564, 670, 710
HpySE526I ACGT 6 cut(s) 305, 656, 686, 761, 837, 905
Hsp92I GRCGYC 1 cut(s) 837
Hsp92II CATG 7 cut(s) 98, 269, 360, 375, 465, 768, 861
Kzo9I GATC 4 cut(s) 118, 454, 552, 826
Lsp1109I GCAGC 1 cut(s) 679
LweI GCATC 2 cut(s) 54, 704
MaeI CTAG 1 cut(s) 413
MaeII ACGT 6 cut(s) 305, 656, 686, 761, 837, 905
MaeIII GTNAC 4 cut(s) 76, 547, 596, 716
MalI GATC 4 cut(s) 120, 456, 554, 828
MboI GATC 4 cut(s) 118, 454, 552, 826
MboII GAAGA 2 cut(s) 154, 492
MflI RGATCY 1 cut(s) 826
MhlI GDGCHC 1 cut(s) 311
MlsI TGGCCA 1 cut(s) 757
MluCI AATT 3 cut(s) 65, 167, 398
MluNI TGGCCA 1 cut(s) 757
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 433
Mox20I TGGCCA 1 cut(s) 757
MscI TGGCCA 1 cut(s) 757
MseI TTAA 3 cut(s) 26, 114, 831
MslI CAYNNNNRTG 2 cut(s) 264, 817
Msp20I TGGCCA 1 cut(s) 757
MspI CCGG 2 cut(s) 504, 898
MspR9I CCNGG 1 cut(s) 505
Mva1269I GAATGC 1 cut(s) 254
NciI CCSGG 1 cut(s) 505
NdeII GATC 4 cut(s) 118, 454, 552, 826
NlaIII CATG 7 cut(s) 98, 269, 360, 375, 465, 768, 861
NlaIV GGNNCC 3 cut(s) 35, 587, 801
NmuCI GTSAC 3 cut(s) 76, 596, 716
NspI RCATGY 2 cut(s) 360, 375
PaeI GCATGC 1 cut(s) 375
PctI GAATGC 1 cut(s) 254
PfeI GAWTC 4 cut(s) 91, 131, 298, 617
PfoI TCCNGGA 1 cut(s) 503
PkrI GCNGC 1 cut(s) 694
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Ppu21I YACGTR 1 cut(s) 306
PpuMI RGGWCCY 1 cut(s) 730
PshAI GACNNNNGTC 1 cut(s) 39
PsiI TTATAA 1 cut(s) 104
Psp1406I AACGTT 1 cut(s) 686
Psp5II RGGWCCY 1 cut(s) 730
PspEI GGTNACC 1 cut(s) 596
PspN4I GGNNCC 3 cut(s) 35, 587, 801
PspPI GGNCC 4 cut(s) 34, 109, 730, 900
PspPPI RGGWCCY 1 cut(s) 730
PsuI RGATCY 1 cut(s) 826
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 2 cut(s) 264, 817
SaqAI TTAA 3 cut(s) 26, 114, 831
SatI GCNGC 1 cut(s) 693
Sau3AI GATC 4 cut(s) 118, 454, 552, 826
Sau96I GGNCC 4 cut(s) 34, 109, 730, 900
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 505
SduI GDGCHC 1 cut(s) 311
SfaNI GCATC 2 cut(s) 54, 704
SinI GGWCC 3 cut(s) 34, 730, 900
SmiMI CAYNNNNRTG 2 cut(s) 264, 817
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
SphI GCATGC 1 cut(s) 375
Sse9I AATT 3 cut(s) 65, 167, 398
SsiI CCGC 1 cut(s) 329
SspMI CTAG 1 cut(s) 413
StyD4I CCNGG 1 cut(s) 503
TaaI ACNGT 2 cut(s) 38, 596
TaiI ACGT 6 cut(s) 308, 659, 689, 764, 840, 908
TaqI TCGA 3 cut(s) 319, 364, 421
TasI AATT 3 cut(s) 65, 167, 398
TfiI GAWTC 4 cut(s) 91, 131, 298, 617
Tru1I TTAA 3 cut(s) 26, 114, 831
Tru9I TTAA 3 cut(s) 26, 114, 831
TscAI CASTG 4 cut(s) 79, 619, 721, 824
TseFI GTSAC 3 cut(s) 76, 596, 716
TseI GCWGC 1 cut(s) 692
Tsp45I GTSAC 3 cut(s) 76, 596, 716
TspDTI ATGAA 5 cut(s) 66, 83, 254, 502, 801
TspRI CASTG 4 cut(s) 79, 619, 721, 824
VpaK11BI GGWCC 3 cut(s) 34, 730, 900
XagI CCTNNNNNAGG 1 cut(s) 28
XapI RAATTY 1 cut(s) 167
XceI RCATGY 2 cut(s) 360, 375
XspI CTAG 1 cut(s) 413
ZraI GACGTC 1 cut(s) 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.