Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000675

Physical Location & Seq

Genomic Coordinates Reverse (-)

24560334 .. 24560783

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1106600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTATTTCACGGAATGCAATTGAATTTTTGCAATTTTGCCTCAGGTCTATCAAGGGCTGCAATTTATTGCAGAATGATAAGAGTGGGAATTTCAGTATTGTTAATTGTGGGAGTTGCAATTCATGTTCGGGACAAAAAGAGGGCTAGCGATGAGCCCCGCCAACCCAATATGGAATTGTCCATCATAACCGATCAACAACCTTCAGTACTCACAATGGGTCTCGATCGTCCGACCATCGAATTGTATCCCAAGATTCAACTTGGTGAGAGGTCGGAATTTCCAAAACAGCTCACCGACAACACATGCCCAATATGTTTGGGTGAGTACCGGCCAAATGAAACCCTGAGGACTATACCACAATGCAACCATTATTTCCATGCTAATTGCATAGATGAATGGCTTGGAAGGAATGCAACATGCCCACTTTGTCGACTTCCGCCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

150

Amino Acids

16.97

Weight (kDa)

8.46

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	98 - 145	1.7e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	101 - 145	1.1e-14	Ring finger domain
zf-RING_11	PF17123	103 - 131	9.2e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	103 - 144	1.4e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	103 - 144	1.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	103 - 142	4e-07	RING-type zinc-finger
zf-RING_5	PF14634	103 - 145	4.6e-07	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000675)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04540 FvH4_5g04550 FvH4_5g04551 FvH4_5g04552 FvH4_5g04554 FvH4_5g29040
malus_domestica	MD06G1106600.v1.1 MD14G1128600.v1.1 MD14G1128700.v1.1
prunus_persica	Prupe.5G118700_v2.0.a1 Prupe.5G118800_v2.0.a1 Prupe.5G119000_v2.0.a1 Prupe.5G119300_v2.0.a1 Prupe.5G119500_v2.0.a1 Prupe.5G119600_v2.0.a1 Prupe.5G119700_v2.0.a1 Prupe.5G119800_v2.0.a1 Prupe.5G119900_v2.0.a1
pyrus_communis	pycom06g10070 pycom06g10090
rosa_chinensis	RchiOBHm_Chr7g0194821 RchiOBHm_Chr7g0194841 RchiOBHm_Chr7g0194851 RchiOBHm_Chr7g0194861 RchiOBHm_Chr7g0194871 RchiOBHm_Chr7g0226371
rosa_laevigata	RLG00000001745 RLG00000004159 RLG00000004160 RLG00000004162 RLG00000004163 RLG00000004166 RLG00000013439
rosa_multiflora	Rmu_co8140360.1_g000001 Rmu_co8197174.1_g000001 Rmu_co8260763.1_g000001 Rmu_co8287607.1_g000001 Rmu_co8453499.1_g000001 Rmu_sc0011834.1_g000004 Rmu_sc0017428.1_g000003 Rmu_sc0040407.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260910 Rroxscaffold_3G00260920
rosa_rugosa	Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0236700
rosa_samantha	Rh7AG146400 Rh7AG146500 Rh7AG146600 Rh7AG383700 Rh7BG146300 Rh7BG146400 Rh7BG146500 Rh7BG146600 Rh7BG146900 Rh7BG147100 Rh7BG147200 Rh7BG147300 Rh7BG370800 Rh7CG150400 Rh7CG150500 Rh7CG150600 Rh7CG403300 Rh7DG147600 Rh7DG147700 Rh7DG147800 Rh7DG382100 Rh7DG482500
rosa_wichuraiana	Rw7G012490 Rw7G012500 Rw7G012510 Rw7G032160 Rw7G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	433
AciI	CCGC	2 cut(s)	160, 440
AcoI	YGGCCR	1 cut(s)	332
AcsI	RAATTY	3 cut(s)	25, 90, 278
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	2 cut(s)	210, 329
AgsI	TTSAA	2 cut(s)	25, 260
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	227
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	3 cut(s)	25, 90, 278
AsuHPI	GGTGA	3 cut(s)	278, 286, 335
AsuNHI	GCTAGC	1 cut(s)	146
AxyI	CCTNAGG	2 cut(s)	43, 347
BanII	GRGCYC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	2 cut(s)	191, 245
BciVI	GTATCC	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	1 cut(s)	147
BfuI	GTATCC	1 cut(s)	258
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
BmcAI	AGTACT	1 cut(s)	210
BmtI	GCTAGC	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	227
Bse118I	RCCGGY	1 cut(s)	330
Bse21I	CCTNAGG	2 cut(s)	43, 347
BseMII	CTCAG	2 cut(s)	57, 338
BseXI	GCAGC	1 cut(s)	46
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	1 cut(s)	334
BsiEI	CGRYCG	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	331
BslFI	GGGAC	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	2 cut(s)	21, 418
BsnI	GGCC	1 cut(s)	334
Bso31I	GGTCTC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	193, 226
BspACI	CCGC	2 cut(s)	160, 440
BspANI	GGCC	1 cut(s)	334
BspCNI	CTCAG	2 cut(s)	56, 339
BspOI	GCTAGC	1 cut(s)	150
BspTNI	GGTCTC	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	330
BssAI	RCCGGY	1 cut(s)	330
BssMI	GATC	2 cut(s)	193, 226
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	2 cut(s)	43, 347
BstKTI	GATC	2 cut(s)	196, 229
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	2 cut(s)	193, 226
BstMCI	CGRYCG	1 cut(s)	229
BstNSI	RCATGY	2 cut(s)	309, 423
BstV1I	GCAGC	1 cut(s)	46
Bsu36I	CCTNAGG	2 cut(s)	43, 347
BsuI	GTATCC	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	334
BtgZI	GCGATG	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	148
Cfr10I	RCCGGY	1 cut(s)	330
Csp6I	GTAC	2 cut(s)	209, 328
CviAII	CATG	4 cut(s)	125, 306, 380, 420
CviJI	RGCY	6 cut(s)	59, 146, 157, 292, 334, 403
CviKI_1	RGCY	6 cut(s)	59, 146, 157, 292, 334, 403
CviQI	GTAC	2 cut(s)	209, 328
DdeI	CTNAG	2 cut(s)	43, 347
DpnI	GATC	2 cut(s)	195, 228
DpnII	GATC	2 cut(s)	193, 226
EaeI	YGGCCR	1 cut(s)	332
EciI	GGCGGA	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	189
Eco81I	CCTNAGG	2 cut(s)	43, 347
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	4 cut(s)	128, 309, 383, 423
FaiI	YATR	9 cut(s)	126, 173, 188, 307, 316, 356, 381, 392, 421
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	4 cut(s)	124, 305, 379, 419
FauI	CCCGC	1 cut(s)	167
FblI	GTMKAC	1 cut(s)	433
Fnu4HI	GCNGC	1 cut(s)	60
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	334
HapII	CCGG	1 cut(s)	331
Hin1II	CATG	4 cut(s)	128, 309, 383, 423
HincII	GTYRAC	1 cut(s)	434
HindII	GTYRAC	1 cut(s)	434
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	1 cut(s)	331
HphI	GGTGA	3 cut(s)	278, 286, 335
Hpy166II	GTNNAC	1 cut(s)	434
Hpy188I	TCNGA	2 cut(s)	234, 277
Hpy188III	TCNNGA	2 cut(s)	131, 224
Hpy8I	GTNNAC	1 cut(s)	434
HpyAV	CCTTC	2 cut(s)	213, 402
HpyCH4V	TGCA	8 cut(s)	19, 33, 62, 72, 119, 366, 390, 416
HpyF3I	CTNAG	2 cut(s)	43, 347
Hsp92II	CATG	4 cut(s)	128, 309, 383, 423
Kzo9I	GATC	2 cut(s)	193, 226
LpnPI	CCDG	3 cut(s)	30, 344, 359
Lsp1109I	GCAGC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	147
MalI	GATC	2 cut(s)	195, 228
MboI	GATC	2 cut(s)	193, 226
MfeI	CAATTG	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	159
MmeI	TCCRAC	2 cut(s)	255, 257
MnlI	CCTC	4 cut(s)	52, 135, 264, 342
MseI	TTAA	1 cut(s)	104
MspI	CCGG	1 cut(s)	331
MunI	CAATTG	1 cut(s)	20
Mva1269I	GAATGC	2 cut(s)	21, 418
NdeII	GATC	2 cut(s)	193, 226
NheI	GCTAGC	1 cut(s)	146
NlaIII	CATG	4 cut(s)	128, 309, 383, 423
NspI	RCATGY	2 cut(s)	309, 423
PctI	GAATGC	2 cut(s)	21, 418
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	61
Ple19I	CGATCG	1 cut(s)	229
PvuI	CGATCG	1 cut(s)	229
RsaI	GTAC	2 cut(s)	210, 329
RsaNI	GTAC	2 cut(s)	209, 328
SalI	GTCGAC	1 cut(s)	432
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	2 cut(s)	193, 226
ScaI	AGTACT	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	4 cut(s)	49, 205, 275, 294
SsiI	CCGC	2 cut(s)	160, 440
SspMI	CTAG	1 cut(s)	147
TaqI	TCGA	3 cut(s)	225, 240, 433
TatI	WGTACW	1 cut(s)	208
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	3 cut(s)	113, 354, 411
TspGWI	ACGGA	1 cut(s)	27
XapI	RAATTY	3 cut(s)	25, 90, 278
XceI	RCATGY	2 cut(s)	309, 423
XmiI	GTMKAC	1 cut(s)	433
XspI	CTAG	1 cut(s)	147
ZrmI	AGTACT	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.