Rh7AG383700

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000675
Physical Location & Seq
Forward (+)
50247029 .. 50248553
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG383700.1

Sequence Viewer

Length: 1194 bp
ATGTTGGTCTTTGGCCAAATAGTACGTACTGGTTTTAGTTTTCATATGGCAACCTCAGACATATTATTCTCATTCTTCTTCTTCTTCTTCACCTTCTTACTTCCTCAGATAGCAGATAGCAGATGTGGTGGTTCAACATGCTATGGGAGCGGCCCACTGATTCGATTCCCTTTCCGGCTAAGATACCGCCAACCGCTAAATTGTGGGTATTCCATTCATTTTGACCTTTCATGCAACAGTACACAAAAAAACACCATTCTCACCCTCCCTTCTTCAGGAGACTTCGAGGTCGAGAGCATCCATTACAGTGACCAAACCATGTGGATCAACGACCTAAACTGGTGCATGCACAAAAGATTCCTTGACAAAGACTTCAGTCTTGTAGGCACGCCTTTCCATTTCTGGCATAGCCTGGAAAACTATACCTACTTCAAGTGCCCGTCCAAAGTTGTGGCTATTGGGTCTTTTGCACCAATCTCTTGCCTTGGCGATTACAATTACAACGTCATTGCTGTCCCGTCGAGTTGGTCAACGACTGAGAAACCACCTCCTCAGTCTCTTTGTCGTGCAATTTCCACAGCTTTGCTTCCGGCGAGTTTTGGGTGGGGGGAGTTTGCTGTAAAGTTGACTTGGGGCGTTCCCGATTGTCGTTCTTGTGAAGCAAATGGTAGAGTTTGTAAGCCTAATGTGACAAGTTCGCACATTGAGTGCTCAACTGATGGTATCCCAATATCCTCAAAGACCGGCATAGCAATTAGCGTGTTGATTCCGGCAGGGCTGTTGTGCATTGTTGGATACGCACTCTATGTTGCGGGCAGGAGGGATGATGGTCGGGTCCAAGAAACAAACAGGCGTGGTCAGCTTCAAGAACTCATTGAAGCCAATGGACAACCTCAAGTAGTTACAGCGGGTCTTGATGCTCAGACTATTGAGTCATATTTGAAGACTCAACTTGGTGAGAGTTTAGAATTACCTGACCCTAATAACAAAACTTGCTCGATATGTTTGGGTGAGTACCAGTCCAAGGAAATGCTAAGGACTATACCAGAATGCAATCATTATTTTCATGTTGGTTGCATAGACGAGTGGCTTAGAAAGAACCCAACATGTCCACTTTGTCGAAATCTTCCTCGAACACCCGAAGTGTCATTAGTGAGACCTCAATCACCTCATGATGATCATTCTATGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

397

Amino Acids

44.46

Weight (kDa)

6.41

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 42 - 111 4.4e-15 Wall-associated receptor kinase galacturonan-binding
zf-rbx1 PF12678 330 - 374 7.6e-10 RING-H2 zinc finger domain
zf-RING_2 PF13639 331 - 374 3.7e-14 Ring finger domain
zf-RING_11 PF17123 332 - 360 7.4e-09 RING-like zinc finger
zf-C3HC4 PF00097 332 - 373 9e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 332 - 373 9.9e-08 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 287, 931
AccBSI CCGCTC 1 cut(s) 150
AciI CCGC 5 cut(s) 150, 187, 194, 812, 908
AclWI GGATC 1 cut(s) 332
AcoI YGGCCR 1 cut(s) 13
AcuI CTGAAG 2 cut(s) 258, 358
AfaI GTAC 4 cut(s) 24, 28, 241, 1016
AfiI CCNNNNNNNGG 2 cut(s) 275, 1024
AflIII ACRYGT 1 cut(s) 1106
AgsI TTSAA 5 cut(s) 135, 433, 866, 878, 943
AjnI CCWGG 1 cut(s) 411
AluBI AGCT 2 cut(s) 581, 862
AluI AGCT 2 cut(s) 581, 862
Alw21I GWGCWC 1 cut(s) 713
Alw26I GTCTC 3 cut(s) 273, 561, 1150
AlwI GGATC 1 cut(s) 332
AoxI GGCC 2 cut(s) 13, 151
AspS9I GGNCC 2 cut(s) 152, 835
AsuHPI GGTGA 5 cut(s) 82, 253, 968, 1022, 1158
AvaII GGWCC 1 cut(s) 835
BaeGI GKGCMC 1 cut(s) 440
BalI TGGCCA 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 950
Bbv12I GWGCWC 1 cut(s) 713
BccI CCATC 2 cut(s) 713, 821
BciT130I CCWGG 1 cut(s) 413
BciVI GTATCC 2 cut(s) 734, 788
BclI TGATCA 1 cut(s) 1177
BcoDI GTCTC 3 cut(s) 273, 561, 1150
BfuI GTATCC 2 cut(s) 734, 788
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 413
Bme18I GGWCC 1 cut(s) 835
BmgT120I GGNCC 2 cut(s) 152, 835
BmiI GGNNCC 1 cut(s) 836
BmrFI CCNGG 1 cut(s) 413
BmsI GCATC 2 cut(s) 306, 907
BoxI GACNNNNGTC 1 cut(s) 375
BpiI GAAGAC 1 cut(s) 950
Bpu10I CCTNAGC 1 cut(s) 1034
BpuEI CTTGAG 1 cut(s) 879
BsaAI YACGTR 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 1150
BsaJI CCNNGG 2 cut(s) 484, 1023
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 1024
Bse118I RCCGGY 1 cut(s) 743
Bse1I ACTGG 3 cut(s) 34, 344, 1018
Bse3DI GCAATG 1 cut(s) 507
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 2 cut(s) 484, 1023
BseGI GGATG 2 cut(s) 297, 829
BseLI CCNNNNNNNGG 2 cut(s) 275, 1024
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 5 cut(s) 69, 119, 528, 566, 935
BseNI ACTGG 3 cut(s) 34, 344, 1018
BseRI GAGGAG 1 cut(s) 540
BseSI GKGCMC 1 cut(s) 440
BshFI GGCC 2 cut(s) 15, 153
BsiHKAI GWGCWC 1 cut(s) 713
BsiSI CCGG 4 cut(s) 175, 590, 744, 770
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 2 cut(s) 275, 1024
BsmAI GTCTC 3 cut(s) 273, 561, 1150
BsmFI GGGAC 1 cut(s) 500
BsmI GAATGC 1 cut(s) 1055
BsnI GGCC 2 cut(s) 15, 153
Bso31I GGTCTC 1 cut(s) 1150
Bsp1286I GDGCHC 2 cut(s) 440, 713
Bsp143I GATC 2 cut(s) 324, 1177
BspACI CCGC 5 cut(s) 150, 187, 194, 812, 908
BspANI GGCC 2 cut(s) 15, 153
BspCNI CTCAG 5 cut(s) 68, 118, 529, 565, 934
BspHI TCATGA 1 cut(s) 1171
BspLI GGNNCC 1 cut(s) 836
BspPI GGATC 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 1150
BsrBI CCGCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 507
BsrFI RCCGGY 1 cut(s) 743
BsrI ACTGG 3 cut(s) 34, 344, 1018
BssAI RCCGGY 1 cut(s) 743
BssECI CCNNGG 2 cut(s) 484, 1023
BssMI GATC 2 cut(s) 324, 1177
BssT1I CCWWGG 2 cut(s) 484, 1023
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 2 cut(s) 239, 308
BstBAI YACGTR 1 cut(s) 26
BstC8I GCNNGC 3 cut(s) 347, 389, 814
BstDEI CTNAG 8 cut(s) 55, 105, 179, 537, 552, 921, 1034, 1091
BstENI CCTNNNNNAGG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 297, 829
BstKTI GATC 2 cut(s) 327, 1180
BstMAI GTCTC 3 cut(s) 273, 561, 1150
BstMBI GATC 2 cut(s) 324, 1177
BstMWI GCNNNNNNNGC 2 cut(s) 147, 859
BstNI CCWGG 1 cut(s) 413
BstNSI RCATGY 3 cut(s) 141, 349, 1110
BstPAI GACNNNNGTC 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 411
BstSLI GKGCMC 1 cut(s) 440
BstSNI TACGTA 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 950
BstXI CCANNNNNNTGG 1 cut(s) 451
BsuI GTATCC 2 cut(s) 734, 788
BsuRI GGCC 2 cut(s) 15, 153
BtsCI GGATG 2 cut(s) 297, 829
BtsIMutI CAGTG 2 cut(s) 155, 313
Cac8I GCNNGC 3 cut(s) 347, 389, 814
CciI TCATGA 1 cut(s) 1171
Cfr10I RCCGGY 1 cut(s) 743
Cfr13I GGNCC 2 cut(s) 152, 835
Csp6I GTAC 4 cut(s) 23, 27, 240, 1015
CspCI CAANNNNNGTGG 2 cut(s) 302, 337
CviAII CATG 7 cut(s) 138, 231, 319, 346, 1067, 1107, 1172
CviQI GTAC 4 cut(s) 23, 27, 240, 1015
DdeI CTNAG 8 cut(s) 55, 105, 179, 537, 552, 921, 1034, 1091
DpnI GATC 2 cut(s) 326, 1179
DpnII GATC 2 cut(s) 324, 1177
DrdI GACNNNNNNGTC 2 cut(s) 287, 931
DseDI GACNNNNNNGTC 2 cut(s) 287, 931
EaeI YGGCCR 1 cut(s) 13
Eco105I TACGTA 1 cut(s) 26
Eco130I CCWWGG 2 cut(s) 484, 1023
Eco31I GGTCTC 1 cut(s) 1150
Eco47I GGWCC 1 cut(s) 835
Eco57I CTGAAG 2 cut(s) 258, 358
EcoNI CCTNNNNNAGG 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 411
EcoT14I CCWWGG 2 cut(s) 484, 1023
ErhI CCWWGG 2 cut(s) 484, 1023
FaeI CATG 7 cut(s) 141, 234, 322, 349, 1070, 1110, 1175
FaqI GGGAC 1 cut(s) 500
FatI CATG 7 cut(s) 137, 230, 318, 345, 1066, 1106, 1171
FauI CCCGC 2 cut(s) 805, 901
FauNDI CATATG 1 cut(s) 45
FbaI TGATCA 1 cut(s) 1177
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 2 cut(s) 284, 836
Fsp4HI GCNGC 1 cut(s) 151
GluI GCNGC 1 cut(s) 151
HaeIII GGCC 2 cut(s) 15, 153
HapII CCGG 4 cut(s) 175, 590, 744, 770
Hin1II CATG 7 cut(s) 141, 234, 322, 349, 1070, 1110, 1175
HincII GTYRAC 2 cut(s) 531, 627
HindII GTYRAC 2 cut(s) 531, 627
HinfI GANTC 6 cut(s) 160, 165, 357, 766, 932, 946
HpaII CCGG 4 cut(s) 175, 590, 744, 770
HphI GGTGA 5 cut(s) 82, 253, 968, 1022, 1158
Hpy166II GTNNAC 4 cut(s) 242, 531, 627, 1112
Hpy188I TCNGA 3 cut(s) 58, 108, 924
Hpy188III TCNNGA 6 cut(s) 276, 292, 641, 866, 914, 1172
Hpy8I GTNNAC 4 cut(s) 242, 531, 627, 1112
Hpy99I CGWCG 1 cut(s) 523
HpyAV CCTTC 2 cut(s) 103, 279
HpyCH4III ACNGT 2 cut(s) 239, 308
HpyCH4IV ACGT 2 cut(s) 25, 504
HpyCH4V TGCA 8 cut(s) 234, 345, 349, 470, 569, 786, 1053, 1077
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 859
HpyF3I CTNAG 8 cut(s) 55, 105, 179, 537, 552, 921, 1034, 1091
HpySE526I ACGT 2 cut(s) 25, 504
Hsp92II CATG 7 cut(s) 141, 234, 322, 349, 1070, 1110, 1175
Ksp22I TGATCA 1 cut(s) 1177
Kzo9I GATC 2 cut(s) 324, 1177
LmnI GCTCC 1 cut(s) 147
LweI GCATC 2 cut(s) 306, 907
MaeII ACGT 2 cut(s) 25, 504
MaeIII GTNAC 3 cut(s) 308, 688, 901
MalI GATC 2 cut(s) 326, 1179
MbiI CCGCTC 1 cut(s) 150
MboI GATC 2 cut(s) 324, 1177
MboII GAAGA 8 cut(s) 67, 70, 73, 76, 79, 264, 955, 1118
MhlI GDGCHC 2 cut(s) 440, 713
MlsI TGGCCA 1 cut(s) 15
MluCI AATT 5 cut(s) 199, 496, 570, 753, 968
MluNI TGGCCA 1 cut(s) 15
MlyI GAGTC 2 cut(s) 940, 941
MmeI TCCRAC 1 cut(s) 772
Mox20I TGGCCA 1 cut(s) 15
MscI TGGCCA 1 cut(s) 15
MseI TTAA 1 cut(s) 1192
MslI CAYNNNNRTG 1 cut(s) 306
Msp20I TGGCCA 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 908
MspI CCGG 4 cut(s) 175, 590, 744, 770
MspR9I CCNGG 1 cut(s) 413
Mva1269I GAATGC 1 cut(s) 1055
MvaI CCWGG 1 cut(s) 413
MwoI GCNNNNNNNGC 2 cut(s) 147, 859
NdeI CATATG 1 cut(s) 45
NdeII GATC 2 cut(s) 324, 1177
NlaIII CATG 7 cut(s) 141, 234, 322, 349, 1070, 1110, 1175
NlaIV GGNNCC 1 cut(s) 836
NmuCI GTSAC 2 cut(s) 308, 688
NspI RCATGY 3 cut(s) 141, 349, 1110
PaeI GCATGC 1 cut(s) 349
PagI TCATGA 1 cut(s) 1171
PciI ACATGT 1 cut(s) 1106
PctI GAATGC 1 cut(s) 1055
PfeI GAWTC 4 cut(s) 160, 165, 357, 766
PkrI GCNGC 1 cut(s) 152
PleI GAGTC 2 cut(s) 940, 940
PpsI GAGTC 2 cut(s) 940, 940
Ppu21I YACGTR 1 cut(s) 26
PscI ACATGT 1 cut(s) 1106
PshAI GACNNNNGTC 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 1 cut(s) 836
PspPI GGNCC 2 cut(s) 152, 835
RsaI GTAC 4 cut(s) 24, 28, 241, 1016
RsaNI GTAC 4 cut(s) 23, 27, 240, 1015
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 1 cut(s) 1192
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 2 cut(s) 324, 1177
Sau96I GGNCC 2 cut(s) 152, 835
SchI GAGTC 2 cut(s) 940, 941
ScrFI CCNGG 1 cut(s) 413
SduI GDGCHC 2 cut(s) 440, 713
SfaNI GCATC 2 cut(s) 306, 907
SinI GGWCC 1 cut(s) 835
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 894
SmoI CTYRAG 1 cut(s) 894
SnaBI TACGTA 1 cut(s) 26
SphI GCATGC 1 cut(s) 349
Sse9I AATT 5 cut(s) 199, 496, 570, 753, 968
SsiI CCGC 5 cut(s) 150, 187, 194, 812, 908
StyD4I CCNGG 1 cut(s) 411
StyI CCWWGG 2 cut(s) 484, 1023
TaaI ACNGT 2 cut(s) 239, 308
TaiI ACGT 2 cut(s) 28, 507
TaqI TCGA 7 cut(s) 163, 285, 291, 521, 998, 1120, 1132
TasI AATT 5 cut(s) 199, 496, 570, 753, 968
TatI WGTACW 1 cut(s) 239
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 4 cut(s) 160, 165, 357, 766
Tru1I TTAA 1 cut(s) 1192
Tru9I TTAA 1 cut(s) 1192
TscAI CASTG 2 cut(s) 162, 313
TseFI GTSAC 2 cut(s) 308, 688
Tsp45I GTSAC 2 cut(s) 308, 688
TspDTI ATGAA 4 cut(s) 32, 206, 219, 1055
TspRI CASTG 2 cut(s) 162, 313
VpaK11BI GGWCC 1 cut(s) 835
XagI CCTNNNNNAGG 1 cut(s) 273
XceI RCATGY 3 cut(s) 141, 349, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.