Prupe.5G119500_v2.0.a1

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000675
Physical Location & Seq
Reverse (-)
11989079 .. 11991373
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G119500.1

Sequence Viewer

Length: 1122 bp
ATGGCTATGGCTACCTTAAAAATCTTCACCTTCTTCTTCTTCTTTCCTCTTGTAGTACCAAGCACTACCACCTGCGTTGGATCGACATGCCCCGCCGGCGGTCCATTGGTTCGATTCCCTTTCCTGCTCAGAGACCACCAAGCCTCAAGTTGTGGGCACCCAGGGTTTAATCTCTCGTGCAACAACAAAAATCAAACCATTCTCACTCTGCCATCTTCTTCCGGGGACTTCATCGTCCAAAGCATCGACTATAAGTACCAAACCCTAACGATCAACGACCCCGATAACTGCCTCCCAAGACGGTTCCTCCACCATGACATCAATCTTAACAATTCACCCTTTTTATACGCATACCCCCCTGAAAACTACACCTTCGTTGGCTGCTCGTCCCAAAAAGCATCTTGGCCATGGAATTCAGCACCCGCAATCCCTTGCCTCACCGAGCACCACTACAAGGTCATTTACGTTGTACAAACCAGTTCGCTTTTGCAGCCGGATCGTATACTTTTTCCGCCGGTTCGGAAACCTTTGCCGGCTGGTTGCTCTAAAATTTCGACAGCTTTGGTTCCATTTTTATTTAACTTTGGTGCTCAGTTGACTTGGGACAGTCCTAATTGTCGTTCTTGTGAAGCTAAGGGTCGTGTTTGTGGGCTGGAAAATGGTACTACAACTTCTCAAATTCGGTGCTTTGGTTCTTCCGGCTTTTCAAGTCTGCCAAGAGCTGCAAGGTATGGCGTAGTGATAAGCGTGGGAATTCCAGGGCTACTGTGCATCATAGGGCTTGCAGGTTATGTTTGTAACAAGACGAGGGCTCGTGGTCAGATTCACCAGCCCACCATCGCACAATTGTTATCCACCATACCCGATCGACGACCTTCGACAGTCAGAATTGGCCTTGATGATCCGACCATCAAATCATATCCCGAGATTCAACTTGGTGAGAGCTGGGAATTGTCAAAACTCAATGACAACACTTGCCCAATATGTTTGTCTGAGTACCAGCCCAAAGAAACACTAAGGACCATACCAGAATGCGGCCATTATTTCCATGCTAATTGCATAGATGAATGGCTTAGAATGAATGCAACTTGCCCAGTTTGTAGAAACCCACAAAAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

374

Amino Acids

41.39

Weight (kDa)

8.71

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 80
AasI GACNNNNNNGTC 1 cut(s) 233
Acc36I ACCTGC 2 cut(s) 80, 776
AccB1I GGYRCC 1 cut(s) 156
AccI GTMKAC 1 cut(s) 502
AciI CCGC 5 cut(s) 93, 99, 423, 512, 1035
AclWI GGATC 3 cut(s) 88, 504, 896
AcoI YGGCCR 2 cut(s) 404, 1036
AcsI RAATTY 4 cut(s) 412, 549, 678, 753
AfaI GTAC 5 cut(s) 57, 257, 471, 664, 998
AfiI CCNNNNNNNGG 3 cut(s) 98, 454, 1034
AgsI TTSAA 2 cut(s) 708, 932
AjnI CCWGG 2 cut(s) 160, 757
AluBI AGCT 4 cut(s) 560, 632, 722, 945
AluI AGCT 4 cut(s) 560, 632, 722, 945
Alw21I GWGCWC 2 cut(s) 447, 592
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 3 cut(s) 88, 504, 896
Ama87I CYCGRG 1 cut(s) 923
AoxI GGCC 3 cut(s) 404, 892, 1036
ApeKI GCWGC 3 cut(s) 381, 490, 722
ApoI RAATTY 4 cut(s) 412, 549, 678, 753
AspS9I GGNCC 2 cut(s) 101, 1020
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 5 cut(s) 19, 327, 430, 818, 950
AvaI CYCGRG 1 cut(s) 923
AvaII GGWCC 2 cut(s) 101, 1020
BaeGI GKGCMC 1 cut(s) 159
BalI TGGCCA 1 cut(s) 406
BanI GGYRCC 1 cut(s) 156
BanII GRGCYC 1 cut(s) 814
BarI GAAGNNNNNNTAC 2 cut(s) 655, 687
BauI CACGAG 2 cut(s) 175, 813
Bbv12I GWGCWC 2 cut(s) 447, 592
BbvI GCAGC 3 cut(s) 368, 502, 709
BccI CCATC 3 cut(s) 220, 845, 917
BcgI CGANNNNNNTGC 2 cut(s) 479, 513
BciT130I CCWGG 2 cut(s) 162, 759
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 126
BfuAI ACCTGC 2 cut(s) 80, 776
BglI GCCNNNNNGGC 1 cut(s) 96
BisI GCNGC 4 cut(s) 382, 491, 723, 1036
BlsI GCNGC 4 cut(s) 383, 492, 724, 1037
Bme1390I CCNGG 3 cut(s) 162, 223, 759
Bme18I GGWCC 2 cut(s) 101, 1020
BmeT110I CYCGRG 1 cut(s) 923
BmgT120I GGNCC 2 cut(s) 101, 1020
BmiI GGNNCC 3 cut(s) 158, 305, 567
BmrFI CCNGG 3 cut(s) 162, 223, 759
BmrI ACTGGG 1 cut(s) 1088
BmsI GCATC 3 cut(s) 252, 407, 780
BmuI ACTGGG 1 cut(s) 1088
Bpu10I CCTNAGC 1 cut(s) 633
BpuEI CTTGAG 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 223
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 5 cut(s) 160, 161, 222, 407, 758
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 454, 1034
Bse118I RCCGGY 3 cut(s) 95, 514, 532
Bse1I ACTGG 2 cut(s) 477, 1094
BseBI CCWGG 2 cut(s) 162, 759
BseDI CCNNGG 5 cut(s) 160, 161, 222, 407, 758
BseLI CCNNNNNNNGG 3 cut(s) 98, 454, 1034
BseMII CTCAG 3 cut(s) 142, 605, 984
BseNI ACTGG 2 cut(s) 477, 1094
BseSI GKGCMC 1 cut(s) 159
BseXI GCAGC 3 cut(s) 368, 502, 709
BseYI CCCAGC 1 cut(s) 945
Bsh1285I CGRYCG 1 cut(s) 868
BshFI GGCC 3 cut(s) 406, 894, 1038
BshNI GGYRCC 1 cut(s) 156
BsiEI CGRYCG 1 cut(s) 868
BsiHKAI GWGCWC 2 cut(s) 447, 592
BsiHKCI CYCGRG 1 cut(s) 923
BsiSI CCGG 6 cut(s) 96, 222, 494, 515, 533, 699
BslFI GGGAC 3 cut(s) 239, 373, 617
BslI CCNNNNNNNGG 3 cut(s) 98, 454, 1034
BsmAI GTCTC 1 cut(s) 126
BsmFI GGGAC 3 cut(s) 239, 373, 617
BsmI GAATGC 2 cut(s) 1037, 1087
BsnI GGCC 3 cut(s) 406, 894, 1038
Bso31I GGTCTC 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 923
Bsp1286I GDGCHC 4 cut(s) 159, 447, 592, 814
Bsp1407I TGTACA 1 cut(s) 469
Bsp143I GATC 5 cut(s) 80, 270, 496, 865, 901
Bsp19I CCATGG 1 cut(s) 407
BspACI CCGC 5 cut(s) 93, 99, 423, 512, 1035
BspANI GGCC 3 cut(s) 406, 894, 1038
BspCNI CTCAG 3 cut(s) 141, 604, 985
BspLI GGNNCC 3 cut(s) 158, 305, 567
BspMI ACCTGC 2 cut(s) 80, 776
BspPI GGATC 3 cut(s) 88, 504, 896
BspT107I GGYRCC 1 cut(s) 156
BspTNI GGTCTC 1 cut(s) 126
BsrFI RCCGGY 3 cut(s) 95, 514, 532
BsrGI TGTACA 1 cut(s) 469
BsrI ACTGG 2 cut(s) 477, 1094
BssAI RCCGGY 3 cut(s) 95, 514, 532
BssECI CCNNGG 5 cut(s) 160, 161, 222, 407, 758
BssMI GATC 5 cut(s) 80, 270, 496, 865, 901
BssNAI GTATAC 1 cut(s) 503
BssSI CACGAG 2 cut(s) 175, 813
BssT1I CCWWGG 1 cut(s) 407
Bst1107I GTATAC 1 cut(s) 503
Bst2BI CACGAG 2 cut(s) 175, 813
Bst2UI CCWGG 2 cut(s) 162, 759
Bst4CI ACNGT 4 cut(s) 303, 608, 768, 883
BstAUI TGTACA 1 cut(s) 469
BstC8I GCNNGC 3 cut(s) 97, 534, 783
BstDEI CTNAG 6 cut(s) 128, 591, 633, 993, 1016, 1073
BstDSI CCRYGG 1 cut(s) 407
BstKTI GATC 5 cut(s) 83, 273, 499, 868, 904
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 5 cut(s) 80, 270, 496, 865, 901
BstMCI CGRYCG 1 cut(s) 868
BstMWI GCNNNNNNNGC 2 cut(s) 96, 490
BstNI CCWGG 2 cut(s) 162, 759
BstNSI RCATGY 1 cut(s) 90
BstSCI CCNGG 3 cut(s) 160, 221, 757
BstSLI GKGCMC 1 cut(s) 159
BstV1I GCAGC 3 cut(s) 368, 502, 709
BstZ17I GTATAC 1 cut(s) 503
BsuRI GGCC 3 cut(s) 406, 894, 1038
BtgI CCRYGG 1 cut(s) 407
BtgZI GCGATG 1 cut(s) 823
BveI ACCTGC 2 cut(s) 80, 776
Cac8I GCNNGC 3 cut(s) 97, 534, 783
Cfr10I RCCGGY 3 cut(s) 95, 514, 532
Cfr13I GGNCC 2 cut(s) 101, 1020
Csp6I GTAC 5 cut(s) 56, 256, 470, 663, 997
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 4 cut(s) 87, 314, 408, 1049
CviQI GTAC 5 cut(s) 56, 256, 470, 663, 997
DdeI CTNAG 6 cut(s) 128, 591, 633, 993, 1016, 1073
DpnI GATC 5 cut(s) 82, 272, 498, 867, 903
DpnII GATC 5 cut(s) 80, 270, 496, 865, 901
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
EaeI YGGCCR 2 cut(s) 404, 1036
EciI GGCGGA 1 cut(s) 501
Eco130I CCWWGG 1 cut(s) 407
Eco24I GRGCYC 1 cut(s) 814
Eco31I GGTCTC 1 cut(s) 126
Eco47I GGWCC 2 cut(s) 101, 1020
Eco88I CYCGRG 1 cut(s) 923
EcoRI GAATTC 2 cut(s) 412, 753
EcoRII CCWGG 2 cut(s) 160, 757
EcoT14I CCWWGG 1 cut(s) 407
EcoT38I GRGCYC 1 cut(s) 814
ErhI CCWWGG 1 cut(s) 407
FaeI CATG 4 cut(s) 90, 317, 411, 1052
FaqI GGGAC 3 cut(s) 239, 373, 617
FatI CATG 4 cut(s) 86, 313, 407, 1048
FauI CCCGC 2 cut(s) 100, 430
FblI GTMKAC 1 cut(s) 502
Fnu4HI GCNGC 4 cut(s) 382, 491, 723, 1036
FriOI GRGCYC 1 cut(s) 814
Fsp4HI GCNGC 4 cut(s) 382, 491, 723, 1036
GluI GCNGC 4 cut(s) 382, 491, 723, 1036
GsaI CCCAGC 1 cut(s) 949
HaeIII GGCC 3 cut(s) 406, 894, 1038
HapII CCGG 6 cut(s) 96, 222, 494, 515, 533, 699
Hin1II CATG 4 cut(s) 90, 317, 411, 1052
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HinfI GANTC 3 cut(s) 114, 823, 928
HpaII CCGG 6 cut(s) 96, 222, 494, 515, 533, 699
HphI GGTGA 5 cut(s) 19, 327, 430, 818, 950
Hpy166II GTNNAC 2 cut(s) 503, 597
Hpy188I TCNGA 6 cut(s) 131, 522, 822, 887, 906, 994
Hpy188III TCNNGA 1 cut(s) 923
Hpy8I GTNNAC 2 cut(s) 503, 597
Hpy99I CGWCG 1 cut(s) 873
HpyAV CCTTC 3 cut(s) 40, 382, 885
HpyCH4III ACNGT 4 cut(s) 303, 608, 768, 883
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 7 cut(s) 180, 490, 725, 771, 785, 1059, 1085
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 490
HpyF3I CTNAG 6 cut(s) 128, 591, 633, 993, 1016, 1073
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 4 cut(s) 90, 317, 411, 1052
KroI GCCGGC 2 cut(s) 95, 532
KroNI GCCGGC 2 cut(s) 97, 534
Kzo9I GATC 5 cut(s) 80, 270, 496, 865, 901
Lsp1109I GCAGC 3 cut(s) 368, 502, 709
LweI GCATC 3 cut(s) 252, 407, 780
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 1 cut(s) 797
MalI GATC 5 cut(s) 82, 272, 498, 867, 903
MboI GATC 5 cut(s) 80, 270, 496, 865, 901
MboII GAAGA 7 cut(s) 16, 25, 28, 31, 207, 210, 687
MfeI CAATTG 1 cut(s) 845
MhlI GDGCHC 4 cut(s) 159, 447, 592, 814
MlsI TGGCCA 1 cut(s) 406
MluNI TGGCCA 1 cut(s) 406
MmeI TCCRAC 2 cut(s) 58, 929
MnlI CCTC 6 cut(s) 57, 154, 302, 317, 446, 801
Mox20I TGGCCA 1 cut(s) 406
MreI CGCCGGCG 1 cut(s) 95
MroNI GCCGGC 2 cut(s) 95, 532
MscI TGGCCA 1 cut(s) 406
MseI TTAA 4 cut(s) 17, 168, 327, 579
Msp20I TGGCCA 1 cut(s) 406
MspI CCGG 6 cut(s) 96, 222, 494, 515, 533, 699
MspR9I CCNGG 3 cut(s) 162, 223, 759
MunI CAATTG 1 cut(s) 845
Mva1269I GAATGC 2 cut(s) 1037, 1087
MvaI CCWGG 2 cut(s) 162, 759
MwoI GCNNNNNNNGC 2 cut(s) 96, 490
NaeI GCCGGC 2 cut(s) 97, 534
NciI CCSGG 1 cut(s) 223
NcoI CCATGG 1 cut(s) 407
NdeII GATC 5 cut(s) 80, 270, 496, 865, 901
NgoMIV GCCGGC 2 cut(s) 95, 532
NlaIII CATG 4 cut(s) 90, 317, 411, 1052
NlaIV GGNNCC 3 cut(s) 158, 305, 567
NspI RCATGY 1 cut(s) 90
PaqCI CACCTGC 1 cut(s) 80
PasI CCCWGGG 1 cut(s) 161
PctI GAATGC 2 cut(s) 1037, 1087
PdiI GCCGGC 2 cut(s) 97, 534
PfeI GAWTC 3 cut(s) 114, 823, 928
PkrI GCNGC 4 cut(s) 383, 492, 724, 1037
Ple19I CGATCG 1 cut(s) 868
Psp6I CCWGG 2 cut(s) 160, 757
PspFI CCCAGC 1 cut(s) 945
PspGI CCWGG 2 cut(s) 160, 757
PspN4I GGNNCC 3 cut(s) 158, 305, 567
PspPI GGNCC 2 cut(s) 101, 1020
PvuI CGATCG 1 cut(s) 868
RsaI GTAC 5 cut(s) 57, 257, 471, 664, 998
RsaNI GTAC 5 cut(s) 56, 256, 470, 663, 997
SaqAI TTAA 4 cut(s) 17, 168, 327, 579
SatI GCNGC 4 cut(s) 382, 491, 723, 1036
Sau3AI GATC 5 cut(s) 80, 270, 496, 865, 901
Sau96I GGNCC 2 cut(s) 101, 1020
ScrFI CCNGG 3 cut(s) 162, 223, 759
SduI GDGCHC 4 cut(s) 159, 447, 592, 814
SfaNI GCATC 3 cut(s) 252, 407, 780
SgrAI CRCCGGYG 1 cut(s) 95
SinI GGWCC 2 cut(s) 101, 1020
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
SsiI CCGC 5 cut(s) 93, 99, 423, 512, 1035
StyD4I CCNGG 3 cut(s) 160, 221, 757
StyI CCWWGG 1 cut(s) 407
TaaI ACNGT 4 cut(s) 303, 608, 768, 883
TaiI ACGT 1 cut(s) 468
TaqI TCGA 6 cut(s) 83, 112, 246, 554, 868, 878
TatI WGTACW 1 cut(s) 469
TauI GCSGC 1 cut(s) 1038
TfiI GAWTC 3 cut(s) 114, 823, 928
Tru1I TTAA 4 cut(s) 17, 168, 327, 579
Tru9I TTAA 4 cut(s) 17, 168, 327, 579
TseI GCWGC 3 cut(s) 381, 490, 722
TspDTI ATGAA 3 cut(s) 220, 1080, 1094
VpaK11BI GGWCC 2 cut(s) 101, 1020
XapI RAATTY 4 cut(s) 412, 549, 678, 753
XceI RCATGY 1 cut(s) 90
XmiI GTMKAC 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.