Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8287607.1

Orthogroup ID

OG0000675

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 681

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8287607.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

agtggtaaggtttgtgggtttcagaatggttcacagtcgaaaattcactgctctagtactctatcttatggtctctcaaaagctacgaagtatggcatagcgattggcgtattaattccagggctattatccattacctgttgtgcactttatgtctcagccccgagaagggatcatggtcgaatccaagaatctaccaccgaattatccggtactgtaactaatcgtcaacctcaagtattcatagcaggccttgatggtcagacaattgagtcatatcccaagactcaactcggcgagaggttggaattgcctgaccctaatgacaaaacttgtccaatatgtctgggtgagtaccaaccgaaggaaactctgaggactataccagaatgtaaccattatttccatgctaattgcattgacgaatggcttagaaaaaatccgacatgcccgctttgtcgcaatctacccggtctttgtcgaaatccactggaggtgtcatcagtgagaccacgtgatgattatgctatatattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

178

Amino Acids

19.69

Weight (kDa)

7.99

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000675)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04540 FvH4_5g04550 FvH4_5g04551 FvH4_5g04552 FvH4_5g04554 FvH4_5g29040
malus_domestica	MD06G1106600.v1.1 MD14G1128600.v1.1 MD14G1128700.v1.1
prunus_persica	Prupe.5G118700_v2.0.a1 Prupe.5G118800_v2.0.a1 Prupe.5G119000_v2.0.a1 Prupe.5G119300_v2.0.a1 Prupe.5G119500_v2.0.a1 Prupe.5G119600_v2.0.a1 Prupe.5G119700_v2.0.a1 Prupe.5G119800_v2.0.a1 Prupe.5G119900_v2.0.a1
pyrus_communis	pycom06g10070 pycom06g10090
rosa_chinensis	RchiOBHm_Chr7g0194821 RchiOBHm_Chr7g0194841 RchiOBHm_Chr7g0194851 RchiOBHm_Chr7g0194861 RchiOBHm_Chr7g0194871 RchiOBHm_Chr7g0226371
rosa_laevigata	RLG00000001745 RLG00000004159 RLG00000004160 RLG00000004162 RLG00000004163 RLG00000004166 RLG00000013439
rosa_multiflora	Rmu_co8140360.1_g000001 Rmu_co8197174.1_g000001 Rmu_co8260763.1_g000001 Rmu_co8287607.1_g000001 Rmu_co8453499.1_g000001 Rmu_sc0011834.1_g000004 Rmu_sc0017428.1_g000003 Rmu_sc0040407.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260910 Rroxscaffold_3G00260920
rosa_rugosa	Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0236700
rosa_samantha	Rh7AG146400 Rh7AG146500 Rh7AG146600 Rh7AG383700 Rh7BG146300 Rh7BG146400 Rh7BG146500 Rh7BG146600 Rh7BG146900 Rh7BG147100 Rh7BG147200 Rh7BG147300 Rh7BG370800 Rh7CG150400 Rh7CG150500 Rh7CG150600 Rh7CG403300 Rh7DG147600 Rh7DG147700 Rh7DG147800 Rh7DG382100 Rh7DG482500
rosa_wichuraiana	Rw7G012490 Rw7G012500 Rw7G012510 Rw7G032160 Rw7G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	271
AciI	CCGC	1 cut(s)	452
AclWI	GGATC	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	42
AcvI	CACGTG	1 cut(s)	515
AfaI	GTAC	3 cut(s)	58, 214, 356
AfiI	CCNNNNNNNGG	3 cut(s)	168, 169, 364
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	3 cut(s)	77, 160, 502
Alw44I	GTGCAC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	180
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	1 cut(s)	250
ApaLI	GTGCAC	1 cut(s)	144
ApoI	RAATTY	1 cut(s)	42
AseI	ATTAAT	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	471
AsuHPI	GGTGA	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	148
BbrPI	CACGTG	1 cut(s)	515
Bbv12I	GWGCWC	1 cut(s)	148
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	471
BcoDI	GTCTC	3 cut(s)	77, 160, 502
BfaI	CTAG	1 cut(s)	54
BmcAI	AGTACT	1 cut(s)	58
Bme1390I	CCNGG	2 cut(s)	120, 471
BmeT110I	CYCGRG	1 cut(s)	163
BmrFI	CCNGG	2 cut(s)	120, 471
BpmI	CTGGAG	1 cut(s)	512
BpuEI	CTTGAG	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	471
BsaAI	YACGTR	1 cut(s)	515
BsaI	GGTCTC	2 cut(s)	77, 502
BsaJI	CCNNGG	1 cut(s)	119
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 169, 364
Bse1I	ACTGG	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	119
BseLI	CCNNNNNNNGG	3 cut(s)	168, 169, 364
BseMII	CTCAG	2 cut(s)	171, 365
BseNI	ACTGG	1 cut(s)	495
BseSI	GKGCMC	1 cut(s)	148
BshFI	GGCC	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	2 cut(s)	210, 471
BslI	CCNNNNNNNGG	3 cut(s)	168, 169, 364
BsmAI	GTCTC	3 cut(s)	77, 160, 502
BsnI	GGCC	1 cut(s)	252
Bso31I	GGTCTC	2 cut(s)	77, 502
BsoBI	CYCGRG	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	1 cut(s)	452
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	2 cut(s)	170, 366
BspPI	GGATC	1 cut(s)	180
BspTNI	GGTCTC	2 cut(s)	77, 502
BsrI	ACTGG	1 cut(s)	495
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	36, 217
BstBAI	YACGTR	1 cut(s)	515
BstC8I	GCNNGC	2 cut(s)	250, 452
BstDEI	CTNAG	3 cut(s)	157, 374, 431
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	3 cut(s)	77, 160, 502
BstMBI	GATC	1 cut(s)	172
BstNI	CCWGG	1 cut(s)	120
BstNSI	RCATGY	1 cut(s)	450
BstSCI	CCNGG	2 cut(s)	118, 469
BstSLI	GKGCMC	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	252
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	3 cut(s)	46, 488, 510
Cac8I	GCNNGC	2 cut(s)	250, 452
Csp6I	GTAC	3 cut(s)	57, 213, 355
CviAII	CATG	3 cut(s)	176, 407, 447
CviJI	RGCY	5 cut(s)	83, 124, 161, 252, 430
CviKI_1	RGCY	5 cut(s)	83, 124, 161, 252, 430
CviQI	GTAC	3 cut(s)	57, 213, 355
DdeI	CTNAG	3 cut(s)	157, 374, 431
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
DrdI	GACNNNNNNGTC	1 cut(s)	271
DseDI	GACNNNNNNGTC	1 cut(s)	271
Eco147I	AGGCCT	1 cut(s)	252
Eco31I	GGTCTC	2 cut(s)	77, 502
Eco72I	CACGTG	1 cut(s)	515
Eco88I	CYCGRG	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	118
FaeI	CATG	3 cut(s)	179, 410, 450
FatI	CATG	3 cut(s)	175, 406, 446
FauI	CCCGC	1 cut(s)	459
FspBI	CTAG	1 cut(s)	54
GsuI	CTGGAG	1 cut(s)	512
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	2 cut(s)	210, 471
Hin1II	CATG	3 cut(s)	179, 410, 450
HincII	GTYRAC	1 cut(s)	230
HindII	GTYRAC	1 cut(s)	230
HinfI	GANTC	4 cut(s)	183, 191, 272, 286
HpaII	CCGG	2 cut(s)	210, 471
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	3 cut(s)	32, 146, 230
Hpy188I	TCNGA	4 cut(s)	24, 264, 375, 444
Hpy8I	GTNNAC	3 cut(s)	32, 146, 230
HpyAV	CCTTC	2 cut(s)	162, 358
HpyCH4III	ACNGT	2 cut(s)	36, 217
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	2 cut(s)	146, 417
HpyF3I	CTNAG	3 cut(s)	157, 374, 431
HpySE526I	ACGT	1 cut(s)	514
Hsp92II	CATG	3 cut(s)	179, 410, 450
Kzo9I	GATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	2 cut(s)	217, 392
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MfeI	CAATTG	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	6 cut(s)	42, 114, 203, 267, 308, 412
MlyI	GAGTC	2 cut(s)	280, 281
MmeI	TCCRAC	2 cut(s)	285, 467
MnlI	CCTC	4 cut(s)	243, 294, 369, 487
MseI	TTAA	2 cut(s)	113, 535
MspI	CCGG	2 cut(s)	210, 471
MspR9I	CCNGG	2 cut(s)	120, 471
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	120
NciI	CCSGG	1 cut(s)	471
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	3 cut(s)	179, 410, 450
NmeAIII	GCCGAG	1 cut(s)	273
NspI	RCATGY	1 cut(s)	450
PceI	AGGCCT	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	183, 191
PleI	GAGTC	2 cut(s)	280, 280
PmaCI	CACGTG	1 cut(s)	515
PmlI	CACGTG	1 cut(s)	515
PpsI	GAGTC	2 cut(s)	280, 280
Ppu21I	YACGTR	1 cut(s)	515
PshBI	ATTAAT	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	118
PspCI	CACGTG	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	118
RsaI	GTAC	3 cut(s)	58, 214, 356
RsaNI	GTAC	3 cut(s)	57, 213, 355
SaqAI	TTAA	2 cut(s)	113, 535
Sau3AI	GATC	1 cut(s)	172
ScaI	AGTACT	1 cut(s)	58
SchI	GAGTC	2 cut(s)	280, 281
ScrFI	CCNGG	2 cut(s)	120, 471
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	7 cut(s)	12, 85, 140, 235, 305, 498, 517
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
Sse9I	AATT	6 cut(s)	42, 114, 203, 267, 308, 412
SseBI	AGGCCT	1 cut(s)	252
SsiI	CCGC	1 cut(s)	452
SspMI	CTAG	1 cut(s)	54
StuI	AGGCCT	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	118, 469
TaaI	ACNGT	2 cut(s)	36, 217
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	3 cut(s)	38, 181, 481
TasI	AATT	6 cut(s)	42, 114, 203, 267, 308, 412
TatI	WGTACW	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	183, 191
Tru1I	TTAA	2 cut(s)	113, 535
Tru9I	TTAA	2 cut(s)	113, 535
TscAI	CASTG	3 cut(s)	53, 495, 510
TspDTI	ATGAA	1 cut(s)	232
TspRI	CASTG	3 cut(s)	53, 495, 510
VneI	GTGCAC	1 cut(s)	144
VspI	ATTAAT	1 cut(s)	113
XapI	RAATTY	1 cut(s)	42
XceI	RCATGY	1 cut(s)	450
XspI	CTAG	1 cut(s)	54
ZrmI	AGTACT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.