Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000675

Physical Location & Seq

Genomic Coordinates Reverse (-)

68732715 .. 68733119

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG482500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGATCTTCATGATTATCTCAGGCCCAGCACCGTGGCGCCTACCGCCGCGACCACAGTCACCTCCGAACCTGTGGCAGAAGCCTCCACGCTCAACATCGGCGCCGCCTCCTCTTTCAACCATGAAGTCGAGGAAGACGCCAGCTTGGATTGAACAGACGGCGTCGTTTACCGAGCAGGATGGAGTTGTTGCCTCTCGGAACTTCCAGCTCCGCCATTGTTCGCCACGGCCGCTGTCGTTGTCGTCGACGAAGGTCTCAAGGACGAAGAAGACAACGATTTCTGAGCTTCACGAACGAACAGATAATCCAGATGCAGAGAATTTGAGAGCTCCGCCATTGTTCGCCACCGCCGCTGTCGTTGTCGTCGACGAAGGTCTCAAGGACGAAGAAGCCATCGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.9

Weight (kDa)

9.35

Isoelectric Point (pI)

62.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000675)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04540 FvH4_5g04550 FvH4_5g04551 FvH4_5g04552 FvH4_5g04554 FvH4_5g29040
malus_domestica	MD06G1106600.v1.1 MD14G1128600.v1.1 MD14G1128700.v1.1
prunus_persica	Prupe.5G118700_v2.0.a1 Prupe.5G118800_v2.0.a1 Prupe.5G119000_v2.0.a1 Prupe.5G119300_v2.0.a1 Prupe.5G119500_v2.0.a1 Prupe.5G119600_v2.0.a1 Prupe.5G119700_v2.0.a1 Prupe.5G119800_v2.0.a1 Prupe.5G119900_v2.0.a1
pyrus_communis	pycom06g10070 pycom06g10090
rosa_chinensis	RchiOBHm_Chr7g0194821 RchiOBHm_Chr7g0194841 RchiOBHm_Chr7g0194851 RchiOBHm_Chr7g0194861 RchiOBHm_Chr7g0194871 RchiOBHm_Chr7g0226371
rosa_laevigata	RLG00000001745 RLG00000004159 RLG00000004160 RLG00000004162 RLG00000004163 RLG00000004166 RLG00000013439
rosa_multiflora	Rmu_co8140360.1_g000001 Rmu_co8197174.1_g000001 Rmu_co8260763.1_g000001 Rmu_co8287607.1_g000001 Rmu_co8453499.1_g000001 Rmu_sc0011834.1_g000004 Rmu_sc0017428.1_g000003 Rmu_sc0040407.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260910 Rroxscaffold_3G00260920
rosa_rugosa	Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0018600 Rorug07G0236700
rosa_samantha	Rh7AG146400 Rh7AG146500 Rh7AG146600 Rh7AG383700 Rh7BG146300 Rh7BG146400 Rh7BG146500 Rh7BG146600 Rh7BG146900 Rh7BG147100 Rh7BG147200 Rh7BG147300 Rh7BG370800 Rh7CG150400 Rh7CG150500 Rh7CG150600 Rh7CG403300 Rh7DG147600 Rh7DG147700 Rh7DG147800 Rh7DG382100 Rh7DG482500
rosa_wichuraiana	Rw7G012490 Rw7G012500 Rw7G012510 Rw7G032160 Rw7G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	36, 100
AccI	GTMKAC	2 cut(s)	245, 366
AccII	CGCG	1 cut(s)	49
AciI	CCGC	8 cut(s)	44, 47, 104, 211, 230, 332, 348, 351
AcoI	YGGCCR	1 cut(s)	227
AcsI	RAATTY	1 cut(s)	319
AcyI	GRCGYC	4 cut(s)	37, 101, 137, 161
AgsI	TTSAA	2 cut(s)	117, 152
AloI	GAACNNNNNNTCC	2 cut(s)	289, 321
AluBI	AGCT	4 cut(s)	143, 208, 286, 329
AluI	AGCT	4 cut(s)	143, 208, 286, 329
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	2 cut(s)	259, 380
AoxI	GGCC	2 cut(s)	22, 227
ApoI	RAATTY	1 cut(s)	319
AspLEI	GCGC	2 cut(s)	39, 103
AspS9I	GGNCC	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	51
BanI	GGYRCC	2 cut(s)	36, 100
BanII	GRGCYC	1 cut(s)	331
BbsI	GAAGAC	2 cut(s)	140, 275
Bbv12I	GWGCWC	1 cut(s)	331
BccI	CCATC	2 cut(s)	173, 401
BceAI	ACGGC	2 cut(s)	174, 242
BcoDI	GTCTC	2 cut(s)	259, 380
BfoI	RGCGCY	2 cut(s)	40, 104
BisI	GCNGC	4 cut(s)	47, 104, 230, 351
BlsI	GCNGC	4 cut(s)	48, 105, 231, 352
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	2 cut(s)	38, 102
BmsI	GCATC	1 cut(s)	301
BoxI	GACNNNNGTC	3 cut(s)	55, 251, 372
BpiI	GAAGAC	2 cut(s)	140, 275
BpuEI	CTTGAG	2 cut(s)	241, 362
Bsa29I	ATCGAT	1 cut(s)	396
BsaHI	GRCGYC	4 cut(s)	37, 101, 137, 161
BsaI	GGTCTC	2 cut(s)	259, 380
BsaJI	CCNNGG	2 cut(s)	32, 224
BseCI	ATCGAT	1 cut(s)	396
BseDI	CCNNGG	2 cut(s)	32, 224
BseGI	GGATG	1 cut(s)	184
BseMII	CTCAG	2 cut(s)	33, 273
BseRI	GAGGAG	1 cut(s)	99
BseX3I	CGGCCG	1 cut(s)	227
BseYI	CCCAGC	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	49
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	2 cut(s)	24, 229
BshNI	GGYRCC	2 cut(s)	36, 100
BshVI	ATCGAT	1 cut(s)	396
BsiEI	CGRYCG	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	331
BsmAI	GTCTC	2 cut(s)	259, 380
BsnI	GGCC	2 cut(s)	24, 229
Bso31I	GGTCTC	2 cut(s)	259, 380
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	8 cut(s)	44, 47, 104, 211, 230, 332, 348, 351
BspANI	GGCC	2 cut(s)	24, 229
BspCNI	CTCAG	2 cut(s)	32, 274
BspDI	ATCGAT	1 cut(s)	396
BspFNI	CGCG	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	2 cut(s)	38, 102
BspT107I	GGYRCC	2 cut(s)	36, 100
BspTNI	GGTCTC	2 cut(s)	259, 380
BssECI	CCNNGG	2 cut(s)	32, 224
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	4 cut(s)	37, 101, 137, 161
Bst4CI	ACNGT	2 cut(s)	33, 57
BstACI	GRCGYC	4 cut(s)	37, 101, 137, 161
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	19, 282
BstDSI	CCRYGG	2 cut(s)	32, 224
BstF5I	GGATG	1 cut(s)	184
BstFNI	CGCG	1 cut(s)	49
BstH2I	RGCGCY	2 cut(s)	40, 104
BstHHI	GCGC	2 cut(s)	39, 103
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	2 cut(s)	259, 380
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 229, 350
BstPAI	GACNNNNGTC	3 cut(s)	55, 251, 372
BstUI	CGCG	1 cut(s)	49
BstV2I	GAAGAC	2 cut(s)	140, 275
BstXI	CCANNNNNNTGG	1 cut(s)	33
BstZI	CGGCCG	1 cut(s)	227
Bsu15I	ATCGAT	1 cut(s)	396
BsuRI	GGCC	2 cut(s)	24, 229
BsuTUI	ATCGAT	1 cut(s)	396
BtgI	CCRYGG	2 cut(s)	32, 224
BtsCI	GGATG	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	141
CciI	TCATGA	1 cut(s)	9
CfoI	GCGC	2 cut(s)	39, 103
Cfr13I	GGNCC	1 cut(s)	23
ClaI	ATCGAT	1 cut(s)	396
CseI	GACGC	2 cut(s)	145, 150
CviAII	CATG	2 cut(s)	10, 121
CviJI	RGCY	8 cut(s)	24, 82, 143, 208, 229, 286, 329, 392
CviKI_1	RGCY	8 cut(s)	24, 82, 143, 208, 229, 286, 329, 392
DdeI	CTNAG	2 cut(s)	19, 282
DinI	GGCGCC	2 cut(s)	38, 102
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	1 cut(s)	227
EagI	CGGCCG	1 cut(s)	227
EciI	GGCGGA	2 cut(s)	200, 321
Ecl136II	GAGCTC	1 cut(s)	329
EclXI	CGGCCG	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	331
Eco31I	GGTCTC	2 cut(s)	259, 380
Eco52I	CGGCCG	1 cut(s)	227
Eco53kI	GAGCTC	1 cut(s)	329
EcoICRI	GAGCTC	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	331
EgeI	GGCGCC	2 cut(s)	38, 102
EheI	GGCGCC	2 cut(s)	38, 102
FaeI	CATG	2 cut(s)	13, 124
FaiI	YATR	2 cut(s)	11, 122
FatI	CATG	2 cut(s)	9, 120
FblI	GTMKAC	2 cut(s)	245, 366
Fnu4HI	GCNGC	4 cut(s)	47, 104, 230, 351
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	4 cut(s)	47, 104, 230, 351
GlaI	GCGC	2 cut(s)	38, 102
GluI	GCNGC	4 cut(s)	47, 104, 230, 351
GsaI	CCCAGC	1 cut(s)	29
HaeII	RGCGCY	2 cut(s)	40, 104
HaeIII	GGCC	2 cut(s)	24, 229
HgaI	GACGC	2 cut(s)	145, 150
HhaI	GCGC	2 cut(s)	39, 103
Hin1I	GRCGYC	4 cut(s)	37, 101, 137, 161
Hin1II	CATG	2 cut(s)	13, 124
Hin6I	GCGC	2 cut(s)	37, 101
HinP1I	GCGC	2 cut(s)	37, 101
HincII	GTYRAC	2 cut(s)	246, 367
HindII	GTYRAC	2 cut(s)	246, 367
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	3 cut(s)	168, 246, 367
Hpy188I	TCNGA	4 cut(s)	66, 198, 283, 404
Hpy188III	TCNNGA	3 cut(s)	10, 290, 308
Hpy8I	GTNNAC	3 cut(s)	168, 246, 367
Hpy99I	CGWCG	5 cut(s)	166, 247, 250, 368, 371
HpyAV	CCTTC	2 cut(s)	244, 365
HpyCH4III	ACNGT	2 cut(s)	33, 57
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 229, 350
HpyF3I	CTNAG	2 cut(s)	19, 282
Hsp92I	GRCGYC	4 cut(s)	37, 101, 137, 161
Hsp92II	CATG	2 cut(s)	13, 124
HspAI	GCGC	2 cut(s)	37, 101
KasI	GGCGCC	2 cut(s)	36, 100
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	213, 334
LpnPI	CCDG	7 cut(s)	6, 39, 83, 153, 161, 218, 321
LweI	GCATC	1 cut(s)	301
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	4 cut(s)	145, 277, 280, 398
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	1 cut(s)	319
Mly113I	GGCGCC	2 cut(s)	37, 101
MnlI	CCTC	6 cut(s)	72, 93, 117, 120, 123, 202
MspA1I	CMGCKG	2 cut(s)	232, 353
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	3 cut(s)	43, 229, 350
NarI	GGCGCC	2 cut(s)	37, 101
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	13, 124
NlaIV	GGNNCC	2 cut(s)	38, 102
NmuCI	GTSAC	1 cut(s)	57
PagI	TCATGA	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	2 cut(s)	242, 363
PflFI	GACNNNGTC	1 cut(s)	160
PkrI	GCNGC	4 cut(s)	48, 105, 231, 352
PluTI	GGCGCC	2 cut(s)	40, 104
PshAI	GACNNNNGTC	3 cut(s)	55, 251, 372
Psp124BI	GAGCTC	1 cut(s)	331
PspFI	CCCAGC	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	38, 102
PspPI	GGNCC	1 cut(s)	23
PsyI	GACNNNGTC	1 cut(s)	160
SacI	GAGCTC	1 cut(s)	331
SalI	GTCGAC	2 cut(s)	244, 365
SatI	GCNGC	4 cut(s)	47, 104, 230, 351
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	8 cut(s)	64, 72, 145, 210, 255, 288, 331, 376
SfaNI	GCATC	1 cut(s)	301
SfoI	GGCGCC	2 cut(s)	38, 102
SgrDI	CGTCGACG	2 cut(s)	244, 365
SmlI	CTYRAG	2 cut(s)	256, 377
SmoI	CTYRAG	2 cut(s)	256, 377
Sse9I	AATT	1 cut(s)	319
SsiI	CCGC	8 cut(s)	44, 47, 104, 211, 230, 332, 348, 351
SspDI	GGCGCC	2 cut(s)	36, 100
SstI	GAGCTC	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	33, 57
TaqI	TCGA	4 cut(s)	128, 245, 366, 396
TasI	AATT	1 cut(s)	319
TauI	GCSGC	4 cut(s)	49, 106, 232, 353
TseFI	GTSAC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	1 cut(s)	137
Tth111I	GACNNNGTC	1 cut(s)	160
XapI	RAATTY	1 cut(s)	319
XmiI	GTMKAC	2 cut(s)	245, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.