Prupe.5G119800_v2.0.a1

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000675
Physical Location & Seq
Reverse (-)
11998522 .. 12000287
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G119800.1

Sequence Viewer

Length: 951 bp
AATTGTGGATATGCAGGGTTTGATCTCTCATGCAACAACCAAAGTCAAACTATTATCACTTTCCCATCTTCTGGGGACTTCATCGTCCAGTGGATCAACTACAGAGAGCAAACCCTATTTATCAACGGCACCGATAACTGCATCCCTAAACGCAGGTCGCTCCGCAGCTGTTCAAGGGGTCGTCCATGGAGTCCACAACCAAATTTCAGGCATTCCAAGGGGTCGTTAGACCCCTCTTGTCCCAACGTGCGTCCGCCTCTGCCTAAACGGTTCCTCCACCGTGACTTCAGTTTTAAAGACACACCCTTCTTTTACTACTCGAGTCATGACAGCACTACAAACTACACGTTCTTCAACTGCTCTCCCGATCAAGTAATATATTGGCCTTCACGCATTGTGTCTTGCCTAGGTACGGAGAACTACACGGTCCTTGCTTTGCCAACAACTTGGACTCTGCCACACCATGAGATATCGTTGCCTAATTGCACTGTAATTTCGACAACTTTGGCTCCAAAATCATTTGAGTGGGAGGAAATTAACCACGGTTTCGAGCTGGCATGGGACGTCCCTGCTTGTCGTTATTGTGAAGTAAGGGGTCAGGCTTGTGGGTTGAAGAAGGGCAAAAGTTTGACAAGTCGATGCTTTCGTACTTGTCAAAGCCACCATCCCATCGCAGAATTATCCACCCTAACCAGCCAACAACCTTCCACCATCGTAACGGGGCTTGATGCTTCGACCATCGAATCATATCCCAAGACTCTGCTGGGTGAGAGTTGGGAATTGCCCAAGTCGAATGACAACAGTTGCCCAATTTGTTTGTCCGAGTACAAATCCAAGGAAACACTAAGGACTATACCAGAATGCAACCATTATTTCCATGCTAGTGGTGTAGACGAGTGGCTTAGAATGAATGCAACCTGCCCACTTTGTCGAAATCCACAGGAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

317

Amino Acids

36.0

Weight (kDa)

7.88

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
AatII GACGTC 1 cut(s) 567
Acc36I ACCTGC 2 cut(s) 144, 926
AccB1I GGYRCC 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 71
AccI GTMKAC 1 cut(s) 891
AciI CCGC 2 cut(s) 163, 254
AclWI GGATC 1 cut(s) 101
AcsI RAATTY 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 271
AcyI GRCGYC 1 cut(s) 564
AfaI GTAC 3 cut(s) 412, 649, 827
AfiI CCNNNNNNNGG 2 cut(s) 71, 412
AflIII ACRYGT 1 cut(s) 345
AgsI TTSAA 3 cut(s) 174, 355, 613
AluBI AGCT 2 cut(s) 168, 553
AluI AGCT 2 cut(s) 168, 553
AlwI GGATC 1 cut(s) 101
Ama87I CYCGRG 1 cut(s) 319
AoxI GGCC 1 cut(s) 383
ApeKI GCWGC 1 cut(s) 165
ApoI RAATTY 1 cut(s) 202
AspA2I CCTAGG 1 cut(s) 406
AspS9I GGNCC 1 cut(s) 427
AsuHPI GGTGA 1 cut(s) 779
AvaI CYCGRG 1 cut(s) 319
AvaII GGWCC 1 cut(s) 427
AvrII CCTAGG 1 cut(s) 406
BanI GGYRCC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 177
BccI CCATC 5 cut(s) 73, 672, 677, 719, 746
BceAI ACGGC 1 cut(s) 142
BfaI CTAG 2 cut(s) 407, 882
BfmI CTRYAG 1 cut(s) 100
BfuAI ACCTGC 2 cut(s) 144, 926
BisI GCNGC 1 cut(s) 166
BlnI CCTAGG 1 cut(s) 406
BlsI GCNGC 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 427
BmeT110I CYCGRG 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 427
BmiI GGNNCC 3 cut(s) 130, 272, 510
BmsI GCATC 3 cut(s) 150, 629, 718
BsaHI GRCGYC 1 cut(s) 564
BsaJI CCNNGG 5 cut(s) 185, 216, 406, 541, 834
BsaXI ACNNNNNCTCC 4 cut(s) 258, 288, 493, 523
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 412
Bse1I ACTGG 1 cut(s) 88
BseDI CCNNGG 5 cut(s) 185, 216, 406, 541, 834
BseGI GGATG 2 cut(s) 141, 664
BseLI CCNNNNNNNGG 2 cut(s) 71, 412
BseNI ACTGG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 177
BseYI CCCAGC 1 cut(s) 763
BshFI GGCC 1 cut(s) 385
BshNI GGYRCC 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 319
BslFI GGGAC 4 cut(s) 89, 225, 551, 575
BslI CCNNNNNNNGG 2 cut(s) 71, 412
BsmFI GGGAC 4 cut(s) 89, 225, 551, 575
BsmI GAATGC 3 cut(s) 211, 866, 916
BsnI GGCC 1 cut(s) 385
BsoBI CYCGRG 1 cut(s) 319
Bsp143I GATC 3 cut(s) 22, 93, 367
Bsp19I CCATGG 1 cut(s) 185
BspACI CCGC 2 cut(s) 163, 254
BspANI GGCC 1 cut(s) 385
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 130, 272, 510
BspMI ACCTGC 2 cut(s) 144, 926
BspPI GGATC 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 128
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 5 cut(s) 185, 216, 406, 541, 834
BssMI GATC 3 cut(s) 22, 93, 367
BssNI GRCGYC 1 cut(s) 564
BssT1I CCWWGG 4 cut(s) 185, 216, 406, 834
Bst4CI ACNGT 6 cut(s) 270, 281, 427, 490, 545, 803
BstACI GRCGYC 1 cut(s) 564
BstC8I GCNNGC 1 cut(s) 555
BstDEI CTNAG 2 cut(s) 845, 902
BstDSI CCRYGG 2 cut(s) 185, 541
BstF5I GGATG 2 cut(s) 141, 664
BstKTI GATC 3 cut(s) 25, 96, 370
BstMBI GATC 3 cut(s) 22, 93, 367
BstSFI CTRYAG 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 177
BstXI CCANNNNNNTGG 2 cut(s) 447, 884
BsuRI GGCC 1 cut(s) 385
BtgI CCRYGG 2 cut(s) 185, 541
BtgZI GCGATG 1 cut(s) 655
BtsCI GGATG 2 cut(s) 141, 664
BtsIMutI CAGTG 2 cut(s) 95, 486
BveI ACCTGC 2 cut(s) 144, 926
Cac8I GCNNGC 1 cut(s) 555
CciI TCATGA 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 427
CseI GACGC 1 cut(s) 239
Csp6I GTAC 3 cut(s) 411, 648, 826
CviAII CATG 6 cut(s) 30, 186, 326, 464, 558, 878
CviJI RGCY 9 cut(s) 168, 385, 509, 553, 602, 660, 696, 724, 901
CviKI_1 RGCY 9 cut(s) 168, 385, 509, 553, 602, 660, 696, 724, 901
CviQI GTAC 3 cut(s) 411, 648, 826
DdeI CTNAG 2 cut(s) 845, 902
DpnI GATC 3 cut(s) 24, 95, 369
DpnII GATC 3 cut(s) 22, 93, 367
DraI TTTAAA 1 cut(s) 295
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
EciI GGCGGA 1 cut(s) 243
Eco130I CCWWGG 4 cut(s) 185, 216, 406, 834
Eco32I GATATC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 319
EcoRV GATATC 1 cut(s) 471
EcoT14I CCWWGG 4 cut(s) 185, 216, 406, 834
ErhI CCWWGG 4 cut(s) 185, 216, 406, 834
FaeI CATG 6 cut(s) 33, 189, 329, 467, 561, 881
FaqI GGGAC 4 cut(s) 89, 225, 551, 575
FatI CATG 6 cut(s) 29, 185, 325, 463, 557, 877
FblI GTMKAC 1 cut(s) 891
Fnu4HI GCNGC 1 cut(s) 166
FokI GGATG 2 cut(s) 128, 651
Fsp4HI GCNGC 1 cut(s) 166
FspBI CTAG 2 cut(s) 407, 882
GluI GCNGC 1 cut(s) 166
GsaI CCCAGC 1 cut(s) 767
HaeIII GGCC 1 cut(s) 385
HgaI GACGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 564
Hin1II CATG 6 cut(s) 33, 189, 329, 467, 561, 881
HinfI GANTC 5 cut(s) 190, 322, 451, 743, 757
HphI GGTGA 1 cut(s) 779
Hpy166II GTNNAC 2 cut(s) 194, 892
Hpy188I TCNGA 1 cut(s) 823
Hpy188III TCNNGA 2 cut(s) 326, 365
Hpy8I GTNNAC 2 cut(s) 194, 892
HpyAV CCTTC 4 cut(s) 316, 396, 610, 714
HpyCH4III ACNGT 6 cut(s) 270, 281, 427, 490, 545, 803
HpyCH4IV ACGT 3 cut(s) 246, 347, 564
HpyCH4V TGCA 6 cut(s) 14, 33, 141, 486, 864, 914
HpyF3I CTNAG 2 cut(s) 845, 902
HpySE526I ACGT 3 cut(s) 246, 347, 564
Hsp92I GRCGYC 1 cut(s) 564
Hsp92II CATG 6 cut(s) 33, 189, 329, 467, 561, 881
Kzo9I GATC 3 cut(s) 22, 93, 367
LmnI GCTCC 2 cut(s) 165, 514
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 3 cut(s) 150, 629, 718
MaeI CTAG 2 cut(s) 407, 882
MaeII ACGT 3 cut(s) 246, 347, 564
MaeIII GTNAC 2 cut(s) 281, 715
MalI GATC 3 cut(s) 24, 95, 369
MboI GATC 3 cut(s) 22, 93, 367
MboII GAAGA 3 cut(s) 60, 343, 625
MluCI AATT 7 cut(s) 202, 481, 492, 534, 677, 779, 810
MlyI GAGTC 4 cut(s) 199, 331, 445, 751
MnlI CCTC 4 cut(s) 244, 267, 284, 523
MseI TTAA 2 cut(s) 294, 537
MslI CAYNNNNRTG 2 cut(s) 523, 882
MspA1I CMGCKG 1 cut(s) 168
Mva1269I GAATGC 3 cut(s) 211, 866, 916
NcoI CCATGG 1 cut(s) 185
NdeII GATC 3 cut(s) 22, 93, 367
NlaIII CATG 6 cut(s) 33, 189, 329, 467, 561, 881
NlaIV GGNNCC 3 cut(s) 130, 272, 510
NmuCI GTSAC 1 cut(s) 281
PaeR7I CTCGAG 1 cut(s) 319
PagI TCATGA 1 cut(s) 325
PcsI WCGNNNNNNNCGW 1 cut(s) 643
PctI GAATGC 3 cut(s) 211, 866, 916
PfeI GAWTC 1 cut(s) 743
PflMI CCANNNNNTGG 1 cut(s) 71
PkrI GCNGC 1 cut(s) 167
PleI GAGTC 4 cut(s) 198, 330, 445, 751
PpsI GAGTC 4 cut(s) 198, 330, 445, 751
PspFI CCCAGC 1 cut(s) 763
PspN4I GGNNCC 3 cut(s) 130, 272, 510
PspPI GGNCC 1 cut(s) 427
PspXI VCTCGAGB 1 cut(s) 319
PvuII CAGCTG 1 cut(s) 168
RsaI GTAC 3 cut(s) 412, 649, 827
RsaNI GTAC 3 cut(s) 411, 648, 826
RseI CAYNNNNRTG 2 cut(s) 523, 882
SaqAI TTAA 2 cut(s) 294, 537
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 3 cut(s) 22, 93, 367
Sau96I GGNCC 1 cut(s) 427
SchI GAGTC 4 cut(s) 199, 331, 445, 751
SetI ASST 9 cut(s) 158, 170, 249, 350, 412, 555, 567, 706, 920
SfaNI GCATC 3 cut(s) 150, 629, 718
SfcI CTRYAG 1 cut(s) 100
Sfr274I CTCGAG 1 cut(s) 319
SinI GGWCC 1 cut(s) 427
SlaI CTCGAG 1 cut(s) 319
SmiMI CAYNNNNRTG 2 cut(s) 523, 882
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 7 cut(s) 202, 481, 492, 534, 677, 779, 810
SsiI CCGC 2 cut(s) 163, 254
SspMI CTAG 2 cut(s) 407, 882
StyI CCWWGG 4 cut(s) 185, 216, 406, 834
TaaI ACNGT 6 cut(s) 270, 281, 427, 490, 545, 803
TaiI ACGT 3 cut(s) 249, 350, 567
TaqI TCGA 8 cut(s) 320, 497, 549, 637, 734, 741, 791, 931
TasI AATT 7 cut(s) 202, 481, 492, 534, 677, 779, 810
TatI WGTACW 1 cut(s) 825
TfiI GAWTC 1 cut(s) 743
Tru1I TTAA 2 cut(s) 294, 537
Tru9I TTAA 2 cut(s) 294, 537
TscAI CASTG 2 cut(s) 95, 493
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 1 cut(s) 165
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 2 cut(s) 70, 923
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 2 cut(s) 95, 493
Van91I CCANNNNNTGG 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 427
XapI RAATTY 1 cut(s) 202
XcmI CCANNNNNNNNNTGG 1 cut(s) 760
XhoI CTCGAG 1 cut(s) 319
XmaJI CCTAGG 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 891
XspI CTAG 2 cut(s) 407, 882
ZraI GACGTC 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.