Prupe.5G119700_v2.0.a1

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000675
Physical Location & Seq
Reverse (-)
11995279 .. 11997359
2081 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G119700.1

Sequence Viewer

Length: 1104 bp
ATGGCTACCTTAGAAATCTTCAACATCTCCATTTTATTCTTATTCTCCCTCTTCCTTCCTCACAGAGCTGCCACCCCTTGCAATGGCTCAACATGCTCCATTGACGGCCCTGTGGCTCGATTTCCTTTCCAAATAAGAAACAACCAAGTGTCAAGTAATTGTGGATATCCTGGGTTTGATCTCTCATGTAACAACCAAAGTCAAACTATTATCACTTTCCCATCTTCTGGGGACTTCATCGTCCAGAGCATCAGCTACCTAGCACAAATCCTATACATCAATGGCACCGATAACTGCATGCCTAAACGGTTCCTCCACCGCGACTTGAGTTTTGAAGACACACCCTTCTCTATCTACTTGGGTTTTGAGGGCACTAAAAACTACACGTTCTTCAACTGCTCTTCCGACCAAGAAATATATTGGCCTTCAAACATTATCTCTTGCATAAGCACAGAGTACTACAAGGTCCTTGCTTTGCCAACAAATTGGTCTCAGCCACGGTTAAAGTTGGCTAATTGCACTGTAATTTCGACAACTTTGGTTCCAAGTTCATTTGAGTGGCAGGAAATTAACCAGGGTTTCATGCTGACATGGGACGTCCCTGATTGTGGTTATTGTGAAGAAAGAGATCAGGCTTGTGGATTGACGAAGGGCAAAAGTTCGACAATTCAATGCTTACATACTGATAAAGTCTCTTCAGTTCTCTCAAAAGAGGCAAAGTTTGGCATAATGATGGGCGTGGGAATTCCTGGGCTATTGTTCTTCGTTTGGCTTGTACTTCATTTTTGTAACAGAACAGTTCAAGGTCAAAACCCCCAGCCCATCACAGAATTATCCACCCTAACCAGCCAACAACCTTCGACGGTCGTAACGGGGCTTTATGCTTCGACTATCGAATCATATCCCAAGACTCAGCTGGGTGAGAGTTGGGAATTGCCCAAGCCGAATGACAATAGTTGCCCAATTTGTTTGTCTGAGTACAAATCCAAGGAAACACTAAGGACTATACCAGAATGCAACCATTATTTCCATGCTAATTGTGTAGACGAGTGGCTTAGAATGAAGGCAACATGCCCACTTTGTCGAAATCCACAGGAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

368

Amino Acids

41.36

Weight (kDa)

5.57

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AatII GACGTC 1 cut(s) 600
AccB1I GGYRCC 1 cut(s) 284
AccB7I CCANNNNNTGG 1 cut(s) 227
AccI GTMKAC 1 cut(s) 1044
AccII CGCG 1 cut(s) 321
AciI CCGC 1 cut(s) 319
AcsI RAATTY 1 cut(s) 744
AcuI CTGAAG 1 cut(s) 681
AcyI GRCGYC 1 cut(s) 597
AfaI GTAC 3 cut(s) 458, 777, 980
AfiI CCNNNNNNNGG 3 cut(s) 83, 227, 608
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 6 cut(s) 22, 335, 394, 429, 671, 803
AjnI CCWGG 3 cut(s) 169, 573, 748
AluBI AGCT 3 cut(s) 68, 255, 916
AluI AGCT 3 cut(s) 68, 255, 916
Alw26I GTCTC 2 cut(s) 495, 697
AoxI GGCC 2 cut(s) 106, 422
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 744
ArsI GACNNNNNNTTYG 2 cut(s) 314, 346
AspS9I GGNCC 2 cut(s) 107, 466
AsuHPI GGTGA 1 cut(s) 932
AvaII GGWCC 1 cut(s) 466
BaeGI GKGCMC 1 cut(s) 374
BanI GGYRCC 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 342
BbvI GCAGC 1 cut(s) 55
BccI CCATC 3 cut(s) 229, 727, 830
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 3 cut(s) 171, 575, 750
BcoDI GTCTC 2 cut(s) 495, 697
BfaI CTAG 1 cut(s) 260
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmcAI AGTACT 1 cut(s) 458
Bme1390I CCNGG 3 cut(s) 171, 575, 750
Bme18I GGWCC 1 cut(s) 466
BmgT120I GGNCC 2 cut(s) 107, 466
BmiI GGNNCC 3 cut(s) 286, 311, 543
BmrFI CCNGG 3 cut(s) 171, 575, 750
BmsI GCATC 1 cut(s) 258
BpiI GAAGAC 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 346
BsaHI GRCGYC 1 cut(s) 597
BsaI GGTCTC 1 cut(s) 495
BsaJI CCNNGG 5 cut(s) 170, 497, 574, 749, 987
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 227, 608
Bse3DI GCAATG 1 cut(s) 88
BseBI CCWGG 3 cut(s) 171, 575, 750
BseDI CCNNGG 5 cut(s) 170, 497, 574, 749, 987
BseLI CCNNNNNNNGG 3 cut(s) 83, 227, 608
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 3 cut(s) 506, 926, 966
BseSI GKGCMC 1 cut(s) 374
BseXI GCAGC 1 cut(s) 55
BseYI CCCAGC 2 cut(s) 816, 916
Bsh1236I CGCG 1 cut(s) 321
Bsh1285I CGRYCG 1 cut(s) 867
BshFI GGCC 2 cut(s) 108, 424
BshNI GGYRCC 1 cut(s) 284
BsiEI CGRYCG 1 cut(s) 867
BslFI GGGAC 3 cut(s) 245, 584, 608
BslI CCNNNNNNNGG 3 cut(s) 83, 227, 608
BsmAI GTCTC 2 cut(s) 495, 697
BsmFI GGGAC 3 cut(s) 245, 584, 608
BsmI GAATGC 1 cut(s) 1019
BsnI GGCC 2 cut(s) 108, 424
Bso31I GGTCTC 1 cut(s) 495
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 2 cut(s) 178, 628
BspACI CCGC 1 cut(s) 319
BspANI GGCC 2 cut(s) 108, 424
BspCNI CTCAG 3 cut(s) 505, 925, 967
BspFNI CGCG 1 cut(s) 321
BspLI GGNNCC 3 cut(s) 286, 311, 543
BspQI GCTCTTC 1 cut(s) 406
BspT107I GGYRCC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 495
BsrDI GCAATG 1 cut(s) 88
BssECI CCNNGG 5 cut(s) 170, 497, 574, 749, 987
BssMI GATC 2 cut(s) 178, 628
BssNI GRCGYC 1 cut(s) 597
BssT1I CCWWGG 1 cut(s) 987
Bst2UI CCWGG 3 cut(s) 171, 575, 750
Bst4CI ACNGT 5 cut(s) 309, 501, 523, 799, 865
Bst6I CTCTTC 3 cut(s) 56, 406, 700
BstACI GRCGYC 1 cut(s) 597
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 6 cut(s) 10, 492, 912, 975, 998, 1055
BstDSI CCRYGG 1 cut(s) 497
BstFNI CGCG 1 cut(s) 321
BstKTI GATC 2 cut(s) 181, 631
BstMAI GTCTC 2 cut(s) 495, 697
BstMBI GATC 2 cut(s) 178, 628
BstMCI CGRYCG 1 cut(s) 867
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstNI CCWGG 3 cut(s) 171, 575, 750
BstNSI RCATGY 3 cut(s) 96, 301, 1074
BstSCI CCNGG 3 cut(s) 169, 573, 748
BstSLI GKGCMC 1 cut(s) 374
BstUI CGCG 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 342
BstXI CCANNNNNNTGG 1 cut(s) 486
BsuRI GGCC 2 cut(s) 108, 424
BtgI CCRYGG 1 cut(s) 497
BtsIMutI CAGTG 1 cut(s) 519
Cac8I GCNNGC 1 cut(s) 299
Cfr13I GGNCC 2 cut(s) 107, 466
Csp6I GTAC 3 cut(s) 457, 776, 979
CviAII CATG 7 cut(s) 93, 186, 298, 583, 591, 1031, 1071
CviQI GTAC 3 cut(s) 457, 776, 979
DdeI CTNAG 6 cut(s) 10, 492, 912, 975, 998, 1055
DpnI GATC 2 cut(s) 180, 630
DpnII GATC 2 cut(s) 178, 628
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eam1104I CTCTTC 3 cut(s) 56, 406, 700
EarI CTCTTC 3 cut(s) 56, 406, 700
Eco130I CCWWGG 1 cut(s) 987
Eco31I GGTCTC 1 cut(s) 495
Eco32I GATATC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 466
Eco57I CTGAAG 1 cut(s) 681
EcoO109I RGGNCCY 1 cut(s) 466
EcoRI GAATTC 1 cut(s) 744
EcoRII CCWGG 3 cut(s) 169, 573, 748
EcoRV GATATC 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 987
ErhI CCWWGG 1 cut(s) 987
FaeI CATG 7 cut(s) 96, 189, 301, 586, 594, 1034, 1074
FaqI GGGAC 3 cut(s) 245, 584, 608
FatI CATG 7 cut(s) 92, 185, 297, 582, 590, 1030, 1070
FblI GTMKAC 1 cut(s) 1044
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 260
GluI GCNGC 1 cut(s) 69
GsaI CCCAGC 2 cut(s) 820, 920
HaeIII GGCC 2 cut(s) 108, 424
Hin1I GRCGYC 1 cut(s) 597
Hin1II CATG 7 cut(s) 96, 189, 301, 586, 594, 1034, 1074
HinfI GANTC 2 cut(s) 896, 910
HphI GGTGA 1 cut(s) 932
Hpy166II GTNNAC 1 cut(s) 1045
Hpy188I TCNGA 2 cut(s) 406, 976
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 1045
Hpy99I CGWCG 1 cut(s) 865
HpyAV CCTTC 6 cut(s) 65, 355, 435, 643, 867, 1057
HpyCH4III ACNGT 5 cut(s) 309, 501, 523, 799, 865
HpyCH4IV ACGT 2 cut(s) 386, 597
HpyCH4V TGCA 5 cut(s) 81, 297, 444, 519, 1017
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
HpyF3I CTNAG 6 cut(s) 10, 492, 912, 975, 998, 1055
HpySE526I ACGT 2 cut(s) 386, 597
Hsp92I GRCGYC 1 cut(s) 597
Hsp92II CATG 7 cut(s) 96, 189, 301, 586, 594, 1034, 1074
Kzo9I GATC 2 cut(s) 178, 628
LguI GCTCTTC 1 cut(s) 406
LmnI GCTCC 1 cut(s) 101
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 258
MaeI CTAG 1 cut(s) 260
MaeII ACGT 2 cut(s) 386, 597
MaeIII GTNAC 3 cut(s) 188, 788, 868
MalI GATC 2 cut(s) 180, 630
MboI GATC 2 cut(s) 178, 628
MboII GAAGA 9 cut(s) 10, 43, 216, 347, 382, 393, 632, 687, 754
MhlI GDGCHC 1 cut(s) 374
MlyI GAGTC 1 cut(s) 904
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 5 cut(s) 59, 69, 323, 361, 706
MseI TTAA 2 cut(s) 503, 570
MslI CAYNNNNRTG 2 cut(s) 556, 731
MspA1I CMGCKG 1 cut(s) 916
MspR9I CCNGG 3 cut(s) 171, 575, 750
Mva1269I GAATGC 1 cut(s) 1019
MvaI CCWGG 3 cut(s) 171, 575, 750
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 1 cut(s) 93
NdeII GATC 2 cut(s) 178, 628
NlaIII CATG 7 cut(s) 96, 189, 301, 586, 594, 1034, 1074
NlaIV GGNNCC 3 cut(s) 286, 311, 543
NspI RCATGY 3 cut(s) 96, 301, 1074
PaeI GCATGC 1 cut(s) 301
PciSI GCTCTTC 1 cut(s) 406
PctI GAATGC 1 cut(s) 1019
PfeI GAWTC 1 cut(s) 896
PflMI CCANNNNNTGG 1 cut(s) 227
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 904
PpsI GAGTC 1 cut(s) 904
PpuMI RGGWCCY 1 cut(s) 466
Psp5II RGGWCCY 1 cut(s) 466
Psp6I CCWGG 3 cut(s) 169, 573, 748
PspFI CCCAGC 2 cut(s) 816, 916
PspGI CCWGG 3 cut(s) 169, 573, 748
PspN4I GGNNCC 3 cut(s) 286, 311, 543
PspPI GGNCC 2 cut(s) 107, 466
PspPPI RGGWCCY 1 cut(s) 466
PvuII CAGCTG 1 cut(s) 916
RsaI GTAC 3 cut(s) 458, 777, 980
RsaNI GTAC 3 cut(s) 457, 776, 979
RseI CAYNNNNRTG 2 cut(s) 556, 731
SapI GCTCTTC 1 cut(s) 406
SaqAI TTAA 2 cut(s) 503, 570
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 2 cut(s) 178, 628
Sau96I GGNCC 2 cut(s) 107, 466
ScaI AGTACT 1 cut(s) 458
SchI GAGTC 1 cut(s) 904
ScrFI CCNGG 3 cut(s) 171, 575, 750
SduI GDGCHC 1 cut(s) 374
SfaNI GCATC 1 cut(s) 258
SinI GGWCC 1 cut(s) 466
SmiMI CAYNNNNRTG 2 cut(s) 556, 731
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
SphI GCATGC 1 cut(s) 301
SsiI CCGC 1 cut(s) 319
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 3 cut(s) 169, 573, 748
StyI CCWWGG 1 cut(s) 987
TaaI ACNGT 5 cut(s) 309, 501, 523, 799, 865
TaiI ACGT 2 cut(s) 389, 600
TaqI TCGA 7 cut(s) 118, 530, 662, 860, 887, 894, 1084
TatI WGTACW 3 cut(s) 456, 775, 978
TfiI GAWTC 1 cut(s) 896
Tru1I TTAA 2 cut(s) 503, 570
Tru9I TTAA 2 cut(s) 503, 570
TscAI CASTG 1 cut(s) 526
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 5 cut(s) 226, 540, 571, 770, 1076
TspRI CASTG 1 cut(s) 526
Van91I CCANNNNNTGG 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 466
XapI RAATTY 1 cut(s) 744
XceI RCATGY 3 cut(s) 96, 301, 1074
XcmI CCANNNNNNNNNTGG 1 cut(s) 913
XmiI GTMKAC 1 cut(s) 1044
XspI CTAG 1 cut(s) 260
ZraI GACGTC 1 cut(s) 598
ZrmI AGTACT 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.