Rmu_co8260763.1_g000001

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8260763.1
OG0000675
Physical Location & Seq
Forward (+)
275 .. 808
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8260763.1_g000001.1.cds

Sequence Viewer

Length: 534 bp
atggcaaccataatcacattactgctattgttcttctccttcttcttcttcttccttcctcacatagcagctacaacctgcggcgcatcagcatgcgctgccagcggcccgtcagttcgattcccattccggctaactgatcgccagcaaacgggttgtgggtattccggtaagtttggtgtatcgtgcaacggacacaaacaaaccattcttaacctcccatcttccggaaacttcacggttgagagcatcagttacaaggaccaactcgtgtggatcaacgacctcgacaactgcatcttcaagcggtttcttgacaaggacttcagtctcataggttcacccttccagtacgcgcttgaccttcaagagtacaccttctacaaatgttcgccccaacttgtgccactgtggtctcccatctcctgtctcagcagtgacaactctgaggtcattggcgtagcgagctggtcaacgttatcgagatcaccttctccctattgtgatgtgattaccagagctttggttccagca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

178

Amino Acids

19.67

Weight (kDa)

6.68

Isoelectric Point (pI)

63.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 86
AccII CGCG 1 cut(s) 356
AccIII TCCGGA 1 cut(s) 227
AciI CCGC 3 cut(s) 81, 105, 307
AclI AACGTT 1 cut(s) 476
AclWI GGATC 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 310
AfaI GTAC 2 cut(s) 353, 374
AfiI CCNNNNNNNGG 2 cut(s) 151, 227
AgsI TTSAA 2 cut(s) 304, 368
AluBI AGCT 3 cut(s) 71, 468, 521
AluI AGCT 3 cut(s) 71, 468, 521
Alw26I GTCTC 3 cut(s) 335, 420, 434
AlwI GGATC 1 cut(s) 284
Aor13HI TCCGGA 1 cut(s) 227
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 2 cut(s) 68, 98
AspLEI GCGC 3 cut(s) 86, 98, 358
AspS9I GGNCC 2 cut(s) 107, 262
AsuHPI GGTGA 2 cut(s) 333, 480
AvaII GGWCC 1 cut(s) 262
BauI CACGAG 1 cut(s) 269
BbvI GCAGC 2 cut(s) 80, 85
BccI CCATC 2 cut(s) 229, 428
BcoDI GTCTC 3 cut(s) 335, 420, 434
BfuAI ACCTGC 1 cut(s) 86
BisI GCNGC 4 cut(s) 69, 82, 99, 106
BlsI GCNGC 4 cut(s) 70, 83, 100, 107
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 2 cut(s) 107, 262
BmiI GGNNCC 1 cut(s) 528
BmsI GCATC 3 cut(s) 95, 258, 306
BoxI GACNNNNGTC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 420
BsaWI WCCGGW 2 cut(s) 167, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 227
Bse1I ACTGG 1 cut(s) 349
BseAI TCCGGA 1 cut(s) 227
BseLI CCNNNNNNNGG 2 cut(s) 151, 227
BseMII CTCAG 2 cut(s) 438, 445
BseNI ACTGG 1 cut(s) 349
BseXI GCAGC 2 cut(s) 80, 85
Bsh1236I CGCG 1 cut(s) 356
BshFI GGCC 1 cut(s) 108
BsiSI CCGG 3 cut(s) 130, 168, 228
BslI CCNNNNNNNGG 2 cut(s) 151, 227
BsmAI GTCTC 3 cut(s) 335, 420, 434
BsnI GGCC 1 cut(s) 108
Bso31I GGTCTC 1 cut(s) 420
Bsp13I TCCGGA 1 cut(s) 227
Bsp143I GATC 3 cut(s) 139, 276, 485
BspACI CCGC 3 cut(s) 81, 105, 307
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 2 cut(s) 439, 444
BspEI TCCGGA 1 cut(s) 227
BspFNI CGCG 1 cut(s) 356
BspLI GGNNCC 1 cut(s) 528
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 420
BsrI ACTGG 1 cut(s) 349
BssMI GATC 3 cut(s) 139, 276, 485
BssSI CACGAG 1 cut(s) 269
Bst2BI CACGAG 1 cut(s) 269
Bst4CI ACNGT 2 cut(s) 241, 411
BstAPI GCANNNNNTGC 1 cut(s) 98
BstC8I GCNNGC 4 cut(s) 94, 103, 146, 466
BstDEI CTNAG 2 cut(s) 431, 447
BstFNI CGCG 1 cut(s) 356
BstHHI GCGC 3 cut(s) 86, 98, 358
BstKTI GATC 3 cut(s) 142, 279, 488
BstMAI GTCTC 3 cut(s) 335, 420, 434
BstMBI GATC 3 cut(s) 139, 276, 485
BstMWI GCNNNNNNNGC 3 cut(s) 98, 102, 465
BstNSI RCATGY 1 cut(s) 96
BstPAI GACNNNNGTC 1 cut(s) 327
BstUI CGCG 1 cut(s) 356
BstV1I GCAGC 2 cut(s) 80, 85
BstXI CCANNNNNNTGG 1 cut(s) 523
BsuRI GGCC 1 cut(s) 108
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 2 cut(s) 407, 442
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 4 cut(s) 94, 103, 146, 466
CfoI GCGC 3 cut(s) 86, 98, 358
Cfr13I GGNCC 2 cut(s) 107, 262
Csp6I GTAC 2 cut(s) 352, 373
CspCI CAANNNNNGTGG 2 cut(s) 254, 289
CviAII CATG 1 cut(s) 93
CviJI RGCY 5 cut(s) 71, 108, 133, 468, 521
CviKI_1 RGCY 5 cut(s) 71, 108, 133, 468, 521
CviQI GTAC 2 cut(s) 352, 373
DdeI CTNAG 2 cut(s) 431, 447
DpnI GATC 3 cut(s) 141, 278, 487
DpnII GATC 3 cut(s) 139, 276, 485
Eco31I GGTCTC 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 310
FaeI CATG 1 cut(s) 96
FaiI YATR 4 cut(s) 11, 65, 94, 335
FatI CATG 1 cut(s) 92
Fnu4HI GCNGC 4 cut(s) 69, 82, 99, 106
Fsp4HI GCNGC 4 cut(s) 69, 82, 99, 106
GlaI GCGC 3 cut(s) 85, 97, 357
GluI GCNGC 4 cut(s) 69, 82, 99, 106
HaeIII GGCC 1 cut(s) 108
HapII CCGG 3 cut(s) 130, 168, 228
HhaI GCGC 3 cut(s) 86, 98, 358
Hin1II CATG 1 cut(s) 96
Hin6I GCGC 3 cut(s) 84, 96, 356
HinP1I GCGC 3 cut(s) 84, 96, 356
HincII GTYRAC 1 cut(s) 474
HindII GTYRAC 1 cut(s) 474
HinfI GANTC 1 cut(s) 120
HpaII CCGG 3 cut(s) 130, 168, 228
HphI GGTGA 2 cut(s) 333, 480
Hpy166II GTNNAC 3 cut(s) 341, 375, 474
Hpy188I TCNGA 1 cut(s) 448
Hpy188III TCNNGA 4 cut(s) 228, 314, 368, 483
Hpy8I GTNNAC 3 cut(s) 341, 375, 474
HpyAV CCTTC 6 cut(s) 49, 65, 355, 374, 388, 501
HpyCH4III ACNGT 2 cut(s) 241, 411
HpyCH4IV ACGT 1 cut(s) 476
HpyCH4V TGCA 2 cut(s) 189, 297
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 102, 465
HpyF3I CTNAG 2 cut(s) 431, 447
HpySE526I ACGT 1 cut(s) 476
Hsp92II CATG 1 cut(s) 96
HspAI GCGC 3 cut(s) 84, 96, 356
Kpn2I TCCGGA 1 cut(s) 227
Kzo9I GATC 3 cut(s) 139, 276, 485
Lsp1109I GCAGC 2 cut(s) 80, 85
LweI GCATC 3 cut(s) 95, 258, 306
MaeII ACGT 1 cut(s) 476
MaeIII GTNAC 2 cut(s) 254, 437
MalI GATC 3 cut(s) 141, 278, 487
MboI GATC 3 cut(s) 139, 276, 485
MboII GAAGA 7 cut(s) 25, 34, 37, 40, 43, 216, 292
MnlI CCTC 4 cut(s) 69, 227, 296, 442
MroI TCCGGA 1 cut(s) 227
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 91
MspA1I CMGCKG 1 cut(s) 105
MspI CCGG 3 cut(s) 130, 168, 228
MvnI CGCG 1 cut(s) 356
MwoI GCNNNNNNNGC 3 cut(s) 98, 102, 465
NdeII GATC 3 cut(s) 139, 276, 485
NlaIII CATG 1 cut(s) 96
NlaIV GGNNCC 1 cut(s) 528
NmuCI GTSAC 1 cut(s) 437
NspI RCATGY 1 cut(s) 96
PaeI GCATGC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 120
PkrI GCNGC 4 cut(s) 70, 83, 100, 107
PshAI GACNNNNGTC 1 cut(s) 327
Psp1406I AACGTT 1 cut(s) 476
PspN4I GGNNCC 1 cut(s) 528
PspPI GGNCC 2 cut(s) 107, 262
RsaI GTAC 2 cut(s) 353, 374
RsaNI GTAC 2 cut(s) 352, 373
RseI CAYNNNNRTG 1 cut(s) 91
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 4 cut(s) 69, 82, 99, 106
Sau3AI GATC 3 cut(s) 139, 276, 485
Sau96I GGNCC 2 cut(s) 107, 262
SfaNI GCATC 3 cut(s) 95, 258, 306
SinI GGWCC 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 91
SphI GCATGC 1 cut(s) 96
SsiI CCGC 3 cut(s) 81, 105, 307
TaaI ACNGT 2 cut(s) 241, 411
TaiI ACGT 1 cut(s) 479
TaqI TCGA 3 cut(s) 118, 288, 482
TatI WGTACW 1 cut(s) 372
TauI GCSGC 2 cut(s) 84, 108
TfiI GAWTC 1 cut(s) 120
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 2 cut(s) 414, 442
TseFI GTSAC 1 cut(s) 437
TseI GCWGC 2 cut(s) 68, 98
Tsp45I GTSAC 1 cut(s) 437
TspGWI ACGGA 1 cut(s) 207
TspRI CASTG 2 cut(s) 414, 442
VpaK11BI GGWCC 1 cut(s) 262
XceI RCATGY 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.